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IMP Reference Guide  2.17.0
The Integrative Modeling Platform
version 2.17.0
multifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_multifit', [dirname(__file__)])
25  except ImportError:
26  import _IMP_multifit
27  return _IMP_multifit
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_multifit', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_multifit = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_multifit
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_MULTIFIT_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_MULTIFIT_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_multifit.delete_IMP_MULTIFIT_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
127  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
133  incr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
134  """
135  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
141  decr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
142  """
143  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
153  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator"""
158  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
163  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
168  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
173  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
178  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
183  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
188  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
193  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
198  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
203  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator
209  __sub__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_MULTIFIT_SwigPyIterator_swigregister = _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_swigregister
216 IMP_MULTIFIT_SwigPyIterator_swigregister(IMP_MULTIFIT_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_multifit.IMP_DEBUG_swigconstant(_IMP_multifit)
226 IMP_DEBUG = _IMP_multifit.IMP_DEBUG
227 
228 _IMP_multifit.IMP_RELEASE_swigconstant(_IMP_multifit)
229 IMP_RELEASE = _IMP_multifit.IMP_RELEASE
230 
231 _IMP_multifit.IMP_SILENT_swigconstant(_IMP_multifit)
232 IMP_SILENT = _IMP_multifit.IMP_SILENT
233 
234 _IMP_multifit.IMP_PROGRESS_swigconstant(_IMP_multifit)
235 IMP_PROGRESS = _IMP_multifit.IMP_PROGRESS
236 
237 _IMP_multifit.IMP_TERSE_swigconstant(_IMP_multifit)
238 IMP_TERSE = _IMP_multifit.IMP_TERSE
239 
240 _IMP_multifit.IMP_VERBOSE_swigconstant(_IMP_multifit)
241 IMP_VERBOSE = _IMP_multifit.IMP_VERBOSE
242 
243 _IMP_multifit.IMP_MEMORY_swigconstant(_IMP_multifit)
244 IMP_MEMORY = _IMP_multifit.IMP_MEMORY
245 
246 _IMP_multifit.IMP_NONE_swigconstant(_IMP_multifit)
247 IMP_NONE = _IMP_multifit.IMP_NONE
248 
249 _IMP_multifit.IMP_USAGE_swigconstant(_IMP_multifit)
250 IMP_USAGE = _IMP_multifit.IMP_USAGE
251 
252 _IMP_multifit.IMP_INTERNAL_swigconstant(_IMP_multifit)
253 IMP_INTERNAL = _IMP_multifit.IMP_INTERNAL
254 
255 _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_multifit)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_multifit)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_multifit.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_multifit)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_multifit.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_multifit.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_multifit)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_multifit.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_multifit.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_multifit)
271 IMP_KERNEL_HAS_NUMPY = _IMP_multifit.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_multifit)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_multifit)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_multifit)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_multifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_multifit.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_multifit._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_multifit._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_multifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_multifit)
328 IMP_HAS_NOEXCEPT = _IMP_multifit.IMP_HAS_NOEXCEPT
329 
330 _IMP_multifit.IMP_C_OPEN_BINARY_swigconstant(_IMP_multifit)
331 IMP_C_OPEN_BINARY = _IMP_multifit.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_multifit.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_multifit)
347 IMP_CGAL_HAS_NUMPY = _IMP_multifit.IMP_CGAL_HAS_NUMPY
348 
349 _IMP_multifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
350 IMPCGAL_SHOW_WARNINGS = _IMP_multifit.IMPCGAL_SHOW_WARNINGS
351 import IMP.cgal
352 
353 _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
354 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL
355 
356 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
357 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
358 
359 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
360 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
361 
362 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
363 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
364 
365 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
366 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
367 
368 _IMP_multifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_multifit)
369 IMP_ALGEBRA_HAS_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_CGAL
370 
371 _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_multifit)
372 IMP_ALGEBRA_HAS_NUMPY = _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY
373 
374 _IMP_multifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_multifit)
375 IMP_ALGEBRA_HAS_ANN = _IMP_multifit.IMP_ALGEBRA_HAS_ANN
376 
377 _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_multifit)
378 IMPALGEBRA_SHOW_WARNINGS = _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS
379 import IMP.algebra
380 
381 _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
382 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL
383 
384 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
385 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
386 
387 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
388 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
389 
390 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
391 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM
392 
393 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
394 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
395 
396 _IMP_multifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_multifit)
397 IMP_DISPLAY_HAS_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_CGAL
398 
399 _IMP_multifit.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_multifit)
400 IMP_DISPLAY_HAS_NUMPY = _IMP_multifit.IMP_DISPLAY_HAS_NUMPY
401 
402 _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_multifit)
403 IMPDISPLAY_SHOW_WARNINGS = _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS
404 import IMP.display
405 
406 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
407 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
408 
409 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
410 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
411 
412 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
413 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
414 
415 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
416 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
417 
418 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
420 
421 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_multifit)
422 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL
423 
424 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_multifit)
425 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5
426 
427 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_multifit)
428 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY
429 
430 _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_multifit)
431 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
432 import IMP.score_functor
433 
434 _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
435 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL
436 
437 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
438 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
439 
440 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
441 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
442 
443 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
444 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM
445 
446 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
447 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
448 
449 _IMP_multifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_multifit)
450 IMP_STATISTICS_HAS_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_CGAL
451 
452 _IMP_multifit.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_multifit)
453 IMP_STATISTICS_HAS_NUMPY = _IMP_multifit.IMP_STATISTICS_HAS_NUMPY
454 
455 _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
456 IMPSTATISTICS_SHOW_WARNINGS = _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS
457 import IMP.statistics
458 
459 _IMP_multifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
460 IMP_CORE_HAS_IMP_CGAL = _IMP_multifit.IMP_CORE_HAS_IMP_CGAL
461 
462 _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
463 IMP_CORE_HAS_IMP_KERNEL = _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL
464 
465 _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
466 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM
467 
468 _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
469 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
470 
471 _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
472 IMP_CORE_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM
473 
474 _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
475 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM
476 
477 _IMP_multifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_multifit)
478 IMP_CORE_HAS_CGAL = _IMP_multifit.IMP_CORE_HAS_CGAL
479 
480 _IMP_multifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_multifit)
481 IMP_CORE_HAS_HDF5 = _IMP_multifit.IMP_CORE_HAS_HDF5
482 
483 _IMP_multifit.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_multifit)
484 IMP_CORE_HAS_NUMPY = _IMP_multifit.IMP_CORE_HAS_NUMPY
485 
486 _IMP_multifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_multifit)
487 IMPCORE_SHOW_WARNINGS = _IMP_multifit.IMPCORE_SHOW_WARNINGS
488 import IMP.core
489 
490 _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_multifit)
491 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
492 
493 _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
494 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL
495 
496 _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
497 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY
498 
499 _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
500 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL
501 
502 _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
503 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
504 
505 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
506 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
507 
508 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
509 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
510 
511 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
512 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM
513 
514 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
515 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
516 
517 _IMP_multifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_multifit)
518 IMP_CONTAINER_HAS_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_CGAL
519 
520 _IMP_multifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_multifit)
521 IMP_CONTAINER_HAS_HDF5 = _IMP_multifit.IMP_CONTAINER_HAS_HDF5
522 
523 _IMP_multifit.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_multifit)
524 IMP_CONTAINER_HAS_NUMPY = _IMP_multifit.IMP_CONTAINER_HAS_NUMPY
525 
526 _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
527 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM
528 
529 _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_multifit)
530 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
531 
532 _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_multifit)
533 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP
534 
535 _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_multifit)
536 IMPCONTAINER_SHOW_WARNINGS = _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS
537 import IMP.container
538 
539 _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
540 IMP_ATOM_HAS_IMP_CGAL = _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL
541 
542 _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
543 IMP_ATOM_HAS_IMP_KERNEL = _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL
544 
545 _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
546 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
547 
548 _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
549 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
550 
551 _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
552 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM
553 
554 _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
555 IMP_ATOM_HAS_BOOST_REGEX = _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX
556 
557 _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
558 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM
559 
560 _IMP_multifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_multifit)
561 IMP_ATOM_HAS_CGAL = _IMP_multifit.IMP_ATOM_HAS_CGAL
562 
563 _IMP_multifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_multifit)
564 IMP_ATOM_HAS_HDF5 = _IMP_multifit.IMP_ATOM_HAS_HDF5
565 
566 _IMP_multifit.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_multifit)
567 IMP_ATOM_HAS_NUMPY = _IMP_multifit.IMP_ATOM_HAS_NUMPY
568 
569 _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
570 IMP_ATOM_HAS_PYTHON_IHM = _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM
571 
572 _IMP_multifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
573 IMPATOM_SHOW_WARNINGS = _IMP_multifit.IMPATOM_SHOW_WARNINGS
574 
575 _IMP_multifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_multifit)
576 IMP_ATOM_TYPE_INDEX = _IMP_multifit.IMP_ATOM_TYPE_INDEX
577 
578 _IMP_multifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_multifit)
579 IMP_RESIDUE_TYPE_INDEX = _IMP_multifit.IMP_RESIDUE_TYPE_INDEX
580 
581 _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_multifit)
582 IMP_HIERARCHY_TYPE_INDEX = _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX
583 
584 _IMP_multifit.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_multifit)
585 IMP_CHAIN_TYPE_INDEX = _IMP_multifit.IMP_CHAIN_TYPE_INDEX
586 import IMP.atom
587 
588 _IMP_multifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
589 IMP_EM_HAS_IMP_CGAL = _IMP_multifit.IMP_EM_HAS_IMP_CGAL
590 
591 _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
592 IMP_EM_HAS_IMP_CONTAINER = _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER
593 
594 _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
595 IMP_EM_HAS_IMP_DISPLAY = _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY
596 
597 _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
598 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
599 
600 _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
601 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM
602 
603 _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
604 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
605 
606 _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
607 IMP_EM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM
608 
609 _IMP_multifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
610 IMP_EM_HAS_BOOST_REGEX = _IMP_multifit.IMP_EM_HAS_BOOST_REGEX
611 
612 _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
613 IMP_EM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM
614 
615 _IMP_multifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_multifit)
616 IMP_EM_HAS_CGAL = _IMP_multifit.IMP_EM_HAS_CGAL
617 
618 _IMP_multifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_multifit)
619 IMP_EM_HAS_HDF5 = _IMP_multifit.IMP_EM_HAS_HDF5
620 
621 _IMP_multifit.IMP_EM_HAS_NUMPY_swigconstant(_IMP_multifit)
622 IMP_EM_HAS_NUMPY = _IMP_multifit.IMP_EM_HAS_NUMPY
623 
624 _IMP_multifit.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
625 IMP_EM_HAS_PYTHON_IHM = _IMP_multifit.IMP_EM_HAS_PYTHON_IHM
626 
627 _IMP_multifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
628 IMPEM_SHOW_WARNINGS = _IMP_multifit.IMPEM_SHOW_WARNINGS
629 import IMP.em
630 
631 _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
632 IMP_SAXS_HAS_IMP_CGAL = _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL
633 
634 _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
635 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER
636 
637 _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
638 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY
639 
640 _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
641 IMP_SAXS_HAS_IMP_KERNEL = _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL
642 
643 _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
644 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
645 
646 _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
647 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM
648 
649 _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
650 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
651 
652 _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
653 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM
654 
655 _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
656 IMP_SAXS_HAS_BOOST_REGEX = _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX
657 
658 _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
659 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM
660 
661 _IMP_multifit.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_multifit)
662 IMP_SAXS_HAS_CGAL = _IMP_multifit.IMP_SAXS_HAS_CGAL
663 
664 _IMP_multifit.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_multifit)
665 IMP_SAXS_HAS_HDF5 = _IMP_multifit.IMP_SAXS_HAS_HDF5
666 
667 _IMP_multifit.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_multifit)
668 IMP_SAXS_HAS_NUMPY = _IMP_multifit.IMP_SAXS_HAS_NUMPY
669 
670 _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
671 IMP_SAXS_HAS_PYTHON_IHM = _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM
672 
673 _IMP_multifit.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
674 IMPSAXS_SHOW_WARNINGS = _IMP_multifit.IMPSAXS_SHOW_WARNINGS
675 import IMP.saxs
676 
677 _IMP_multifit.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
678 IMP_ISD_HAS_IMP_CGAL = _IMP_multifit.IMP_ISD_HAS_IMP_CGAL
679 
680 _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
681 IMP_ISD_HAS_IMP_DISPLAY = _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY
682 
683 _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
684 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
685 
686 _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
687 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM
688 
689 _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
690 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
691 
692 _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
693 IMP_ISD_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM
694 
695 _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
696 IMP_ISD_HAS_BOOST_REGEX = _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX
697 
698 _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
699 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM
700 
701 _IMP_multifit.IMP_ISD_HAS_CGAL_swigconstant(_IMP_multifit)
702 IMP_ISD_HAS_CGAL = _IMP_multifit.IMP_ISD_HAS_CGAL
703 
704 _IMP_multifit.IMP_ISD_HAS_HDF5_swigconstant(_IMP_multifit)
705 IMP_ISD_HAS_HDF5 = _IMP_multifit.IMP_ISD_HAS_HDF5
706 
707 _IMP_multifit.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_multifit)
708 IMP_ISD_HAS_NUMPY = _IMP_multifit.IMP_ISD_HAS_NUMPY
709 
710 _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
711 IMP_ISD_HAS_PYTHON_IHM = _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM
712 
713 _IMP_multifit.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_multifit)
714 IMPISD_SHOW_WARNINGS = _IMP_multifit.IMPISD_SHOW_WARNINGS
715 import IMP.isd
716 
717 _IMP_multifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
718 IMP_RMF_HAS_IMP_CGAL = _IMP_multifit.IMP_RMF_HAS_IMP_CGAL
719 
720 _IMP_multifit.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_multifit)
721 IMP_RMF_HAS_IMP_EM = _IMP_multifit.IMP_RMF_HAS_IMP_EM
722 
723 _IMP_multifit.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
724 IMP_RMF_HAS_IMP_SAXS = _IMP_multifit.IMP_RMF_HAS_IMP_SAXS
725 
726 _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
727 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
728 
729 _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_multifit)
730 IMP_RMF_HAS_IMP_STATISTICS = _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS
731 
732 _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
733 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM
734 
735 _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
736 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
737 
738 _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
739 IMP_RMF_HAS_BOOST_RANDOM = _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM
740 
741 _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
742 IMP_RMF_HAS_BOOST_REGEX = _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX
743 
744 _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
745 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM
746 
747 _IMP_multifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_multifit)
748 IMP_RMF_HAS_CGAL = _IMP_multifit.IMP_RMF_HAS_CGAL
749 
750 _IMP_multifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_multifit)
751 IMP_RMF_HAS_HDF5 = _IMP_multifit.IMP_RMF_HAS_HDF5
752 
753 _IMP_multifit.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_multifit)
754 IMP_RMF_HAS_NUMPY = _IMP_multifit.IMP_RMF_HAS_NUMPY
755 
756 _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
757 IMP_RMF_HAS_PYTHON_IHM = _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM
758 
759 _IMP_multifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_multifit)
760 IMPRMF_SHOW_WARNINGS = _IMP_multifit.IMPRMF_SHOW_WARNINGS
761 import IMP.rmf
762 import RMF
763 
764 _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_multifit)
765 IMP_DOMINO_HAS_IMP_ATOM = _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM
766 
767 _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
768 IMP_DOMINO_HAS_IMP_CGAL = _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL
769 
770 _IMP_multifit.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_multifit)
771 IMP_DOMINO_HAS_IMP_EM = _IMP_multifit.IMP_DOMINO_HAS_IMP_EM
772 
773 _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_multifit)
774 IMP_DOMINO_HAS_IMP_ISD = _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD
775 
776 _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
777 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL
778 
779 _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_multifit)
780 IMP_DOMINO_HAS_IMP_RMF = _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF
781 
782 _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
783 IMP_DOMINO_HAS_IMP_SAXS = _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS
784 
785 _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
786 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
787 
788 _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
789 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
790 
791 _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
792 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
793 
794 _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
795 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM
796 
797 _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
798 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX
799 
800 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
801 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM
802 
803 _IMP_multifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_multifit)
804 IMP_DOMINO_HAS_CGAL = _IMP_multifit.IMP_DOMINO_HAS_CGAL
805 
806 _IMP_multifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_multifit)
807 IMP_DOMINO_HAS_HDF5 = _IMP_multifit.IMP_DOMINO_HAS_HDF5
808 
809 _IMP_multifit.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_multifit)
810 IMP_DOMINO_HAS_NUMPY = _IMP_multifit.IMP_DOMINO_HAS_NUMPY
811 
812 _IMP_multifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_multifit)
813 IMP_DOMINO_HAS_RMF = _IMP_multifit.IMP_DOMINO_HAS_RMF
814 
815 _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
816 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM
817 
818 _IMP_multifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_multifit)
819 IMPDOMINO_SHOW_WARNINGS = _IMP_multifit.IMPDOMINO_SHOW_WARNINGS
820 import RMF_HDF5
821 import IMP.domino
822 
823 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
824 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL
825 
826 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
827 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
828 
829 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
830 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
831 
832 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD_swigconstant(_IMP_multifit)
833 IMP_MULTIFIT_HAS_IMP_ISD = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD
834 
835 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
836 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL
837 
838 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_multifit)
839 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF
840 
841 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
842 IMP_MULTIFIT_HAS_IMP_SAXS = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS
843 
844 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
845 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
846 
847 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_multifit)
848 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
849 
850 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
851 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
852 
853 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
854 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX
855 
856 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
857 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
858 
859 _IMP_multifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_multifit)
860 IMP_MULTIFIT_HAS_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_CGAL
861 
862 _IMP_multifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_multifit)
863 IMP_MULTIFIT_HAS_HDF5 = _IMP_multifit.IMP_MULTIFIT_HAS_HDF5
864 
865 _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY_swigconstant(_IMP_multifit)
866 IMP_MULTIFIT_HAS_NUMPY = _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY
867 
868 _IMP_multifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_multifit)
869 IMP_MULTIFIT_HAS_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_RMF
870 
871 _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
872 IMP_MULTIFIT_HAS_PYTHON_IHM = _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM
873 
874 _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_multifit)
875 IMPMULTIFIT_SHOW_WARNINGS = _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS
876 
877 _object_types.append("RadiusOfGyrationRestraint")
878 
879 
880 def _object_cast_to_RadiusOfGyrationRestraint(o):
881  """_object_cast_to_RadiusOfGyrationRestraint(Object o) -> RadiusOfGyrationRestraint"""
882  return _IMP_multifit._object_cast_to_RadiusOfGyrationRestraint(o)
883 
884 _object_types.append("ComponentHeader")
885 
886 
887 def _object_cast_to_ComponentHeader(o):
888  """_object_cast_to_ComponentHeader(Object o) -> ComponentHeader"""
889  return _IMP_multifit._object_cast_to_ComponentHeader(o)
890 
891 _object_types.append("AssemblyHeader")
892 
893 
894 def _object_cast_to_AssemblyHeader(o):
895  """_object_cast_to_AssemblyHeader(Object o) -> AssemblyHeader"""
896  return _IMP_multifit._object_cast_to_AssemblyHeader(o)
897 
898 _object_types.append("SettingsData")
899 
900 
901 def _object_cast_to_SettingsData(o):
902  """_object_cast_to_SettingsData(Object o) -> SettingsData"""
903  return _IMP_multifit._object_cast_to_SettingsData(o)
904 
905 _object_types.append("WeightedExcludedVolumeRestraint")
906 
907 
908 def _object_cast_to_WeightedExcludedVolumeRestraint(o):
909  """_object_cast_to_WeightedExcludedVolumeRestraint(Object o) -> WeightedExcludedVolumeRestraint"""
910  return _IMP_multifit._object_cast_to_WeightedExcludedVolumeRestraint(o)
911 
912 _object_types.append("ComplementarityRestraint")
913 
914 
915 def _object_cast_to_ComplementarityRestraint(o):
916  """_object_cast_to_ComplementarityRestraint(Object o) -> ComplementarityRestraint"""
917  return _IMP_multifit._object_cast_to_ComplementarityRestraint(o)
918 
919 ProteinRecordDataList=list
920 _plural_types.append("ProteinRecordDataList")
921 _value_types.append("ProteinRecordData")
922 
923 
924 FittingSolutionRecords=list
925 _plural_types.append("FittingSolutionRecords")
926 _value_types.append("FittingSolutionRecord")
927 
928 
929 AnchorsDataList=list
930 _plural_types.append("AnchorsDataList")
931 _value_types.append("AnchorsData")
932 
933 
934 DominoParamsList=list
935 _plural_types.append("DominoParamsList")
936 _value_types.append("DominoParams")
937 
938 
939 ComplementarityParamsList=list
940 _plural_types.append("ComplementarityParamsList")
941 _value_types.append("ComplementarityParams")
942 
943 
944 XlinkParamsList=list
945 _plural_types.append("XlinkParamsList")
946 _value_types.append("XlinkParams")
947 
948 
949 ConnectivityParamsList=list
950 _plural_types.append("ConnectivityParamsList")
951 _value_types.append("ConnectivityParams")
952 
953 
954 FragmentsParamsList=list
955 _plural_types.append("FragmentsParamsList")
956 _value_types.append("FragmentsParams")
957 
958 
959 RogParamsList=list
960 _plural_types.append("RogParamsList")
961 _value_types.append("RogParams")
962 
963 
964 EVParamsList=list
965 _plural_types.append("EVParamsList")
966 _value_types.append("EVParams")
967 
968 
969 FiltersParamsList=list
970 _plural_types.append("FiltersParamsList")
971 _value_types.append("FiltersParams")
972 
973 
974 AlignmentParamsList=list
975 _plural_types.append("AlignmentParamsList")
976 _value_types.append("AlignmentParams")
977 
978 
979 FittingParamsList=list
980 _plural_types.append("FittingParamsList")
981 _value_types.append("FittingParams")
982 
983 
984 ProteinsAnchorsSamplingSpaces=list
985 _plural_types.append("ProteinsAnchorsSamplingSpaces")
986 _value_types.append("ProteinsAnchorsSamplingSpace")
987 
988 
989 _object_types.append("ProteomicsData")
990 
991 
992 def _object_cast_to_ProteomicsData(o):
993  """_object_cast_to_ProteomicsData(Object o) -> ProteomicsData"""
994  return _IMP_multifit._object_cast_to_ProteomicsData(o)
995 
996 _object_types.append("FFTFitting")
997 
998 
999 def _object_cast_to_FFTFitting(o):
1000  """_object_cast_to_FFTFitting(Object o) -> FFTFitting"""
1001  return _IMP_multifit._object_cast_to_FFTFitting(o)
1002 
1003 _object_types.append("FFTFittingOutput")
1004 
1005 
1006 def _object_cast_to_FFTFittingOutput(o):
1007  """_object_cast_to_FFTFittingOutput(Object o) -> FFTFittingOutput"""
1008  return _IMP_multifit._object_cast_to_FFTFittingOutput(o)
1009 
1010 _object_types.append("ProbabilisticAnchorGraph")
1011 
1012 
1013 def _object_cast_to_ProbabilisticAnchorGraph(o):
1014  """_object_cast_to_ProbabilisticAnchorGraph(Object o) -> ProbabilisticAnchorGraph"""
1015  return _IMP_multifit._object_cast_to_ProbabilisticAnchorGraph(o)
1016 
1017 _object_types.append("Ensemble")
1018 
1019 
1020 def _object_cast_to_Ensemble(o):
1021  """_object_cast_to_Ensemble(Object o) -> Ensemble"""
1022  return _IMP_multifit._object_cast_to_Ensemble(o)
1023 
1024 _object_types.append("ProteomicsEMAlignmentAtomic")
1025 
1026 
1027 def _object_cast_to_ProteomicsEMAlignmentAtomic(o):
1028  """_object_cast_to_ProteomicsEMAlignmentAtomic(Object o) -> ProteomicsEMAlignmentAtomic"""
1029  return _IMP_multifit._object_cast_to_ProteomicsEMAlignmentAtomic(o)
1030 
1031 _object_types.append("RigidLeavesRefiner")
1032 
1033 
1034 def _object_cast_to_RigidLeavesRefiner(o):
1035  """_object_cast_to_RigidLeavesRefiner(Object o) -> RigidLeavesRefiner"""
1036  return _IMP_multifit._object_cast_to_RigidLeavesRefiner(o)
1037 
1038 def add_surface_index(*args):
1039  """
1040  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key, FloatKey weight_key)
1041  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key)
1042  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key)
1043  add_surface_index(Hierarchy mhd, IMP::Float apix)
1044  """
1045  return _IMP_multifit.add_surface_index(*args)
1046 
1047 def create_weighted_excluded_volume_restraint(*args):
1048  """
1049  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2, FloatKey shell_key) -> Restraint
1050  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2) -> Restraint
1051  """
1052  return _IMP_multifit.create_weighted_excluded_volume_restraint(*args)
1053 class FittingSolutionRecord(object):
1054  """Proxy of C++ IMP::multifit::FittingSolutionRecord class"""
1055  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1056 
1057  def __init__(self):
1058  """__init__(IMP::multifit::FittingSolutionRecord self) -> FittingSolutionRecord"""
1059  this = _IMP_multifit.new_FittingSolutionRecord()
1060  try:
1061  self.this.append(this)
1062  except:
1063  self.this = this
1064 
1065  def get_index(self):
1066  """get_index(FittingSolutionRecord self) -> unsigned int"""
1067  return _IMP_multifit.FittingSolutionRecord_get_index(self)
1068 
1069 
1070  def set_index(self, new_ind):
1071  """set_index(FittingSolutionRecord self, unsigned int new_ind)"""
1072  return _IMP_multifit.FittingSolutionRecord_set_index(self, new_ind)
1073 
1074 
1075  def get_solution_filename(self):
1076  """get_solution_filename(FittingSolutionRecord self) -> std::string"""
1077  return _IMP_multifit.FittingSolutionRecord_get_solution_filename(self)
1078 
1079 
1080  def set_solution_filename(self, sol_fn):
1081  """set_solution_filename(FittingSolutionRecord self, std::string sol_fn)"""
1082  return _IMP_multifit.FittingSolutionRecord_set_solution_filename(self, sol_fn)
1083 
1084 
1085  def get_fit_transformation(self):
1086  """get_fit_transformation(FittingSolutionRecord self) -> Transformation3D"""
1087  return _IMP_multifit.FittingSolutionRecord_get_fit_transformation(self)
1088 
1089 
1090  def set_fit_transformation(self, t):
1091  """set_fit_transformation(FittingSolutionRecord self, Transformation3D t)"""
1092  return _IMP_multifit.FittingSolutionRecord_set_fit_transformation(self, t)
1093 
1094 
1095  def get_match_size(self):
1096  """get_match_size(FittingSolutionRecord self) -> unsigned int"""
1097  return _IMP_multifit.FittingSolutionRecord_get_match_size(self)
1098 
1099 
1100  def set_match_size(self, match_size):
1101  """set_match_size(FittingSolutionRecord self, unsigned int match_size)"""
1102  return _IMP_multifit.FittingSolutionRecord_set_match_size(self, match_size)
1103 
1104 
1105  def get_match_average_distance(self):
1106  """get_match_average_distance(FittingSolutionRecord self) -> IMP::Float"""
1107  return _IMP_multifit.FittingSolutionRecord_get_match_average_distance(self)
1108 
1109 
1110  def set_match_average_distance(self, match_avg_dist):
1111  """set_match_average_distance(FittingSolutionRecord self, IMP::Float match_avg_dist)"""
1112  return _IMP_multifit.FittingSolutionRecord_set_match_average_distance(self, match_avg_dist)
1113 
1114 
1115  def get_fitting_score(self):
1116  """get_fitting_score(FittingSolutionRecord self) -> IMP::Float"""
1117  return _IMP_multifit.FittingSolutionRecord_get_fitting_score(self)
1118 
1119 
1120  def set_fitting_score(self, fit_score):
1121  """set_fitting_score(FittingSolutionRecord self, IMP::Float fit_score)"""
1122  return _IMP_multifit.FittingSolutionRecord_set_fitting_score(self, fit_score)
1123 
1124 
1125  def get_rmsd_to_reference(self):
1126  """get_rmsd_to_reference(FittingSolutionRecord self) -> IMP::Float"""
1127  return _IMP_multifit.FittingSolutionRecord_get_rmsd_to_reference(self)
1128 
1129 
1130  def set_rmsd_to_reference(self, rmsd_to_ref):
1131  """set_rmsd_to_reference(FittingSolutionRecord self, IMP::Float rmsd_to_ref)"""
1132  return _IMP_multifit.FittingSolutionRecord_set_rmsd_to_reference(self, rmsd_to_ref)
1133 
1134 
1135  def get_dock_transformation(self):
1136  """get_dock_transformation(FittingSolutionRecord self) -> Transformation3D"""
1137  return _IMP_multifit.FittingSolutionRecord_get_dock_transformation(self)
1138 
1139 
1140  def set_dock_transformation(self, t):
1141  """set_dock_transformation(FittingSolutionRecord self, Transformation3D t)"""
1142  return _IMP_multifit.FittingSolutionRecord_set_dock_transformation(self, t)
1143 
1144 
1145  def get_envelope_penetration_score(self):
1146  """get_envelope_penetration_score(FittingSolutionRecord self) -> IMP::Float"""
1147  return _IMP_multifit.FittingSolutionRecord_get_envelope_penetration_score(self)
1148 
1149 
1150  def set_envelope_penetration_score(self, s):
1151  """set_envelope_penetration_score(FittingSolutionRecord self, IMP::Float s)"""
1152  return _IMP_multifit.FittingSolutionRecord_set_envelope_penetration_score(self, s)
1153 
1154 
1155  def show(self, *args):
1156  """
1157  show(FittingSolutionRecord self, _ostream out)
1158  show(FittingSolutionRecord self)
1159  """
1160  return _IMP_multifit.FittingSolutionRecord_show(self, *args)
1161 
1162 
1163  def get_record_header():
1164  """get_record_header() -> std::string"""
1165  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1166 
1167  get_record_header = staticmethod(get_record_header)
1168 
1169  def __str__(self):
1170  """__str__(FittingSolutionRecord self) -> std::string"""
1171  return _IMP_multifit.FittingSolutionRecord___str__(self)
1172 
1173 
1174  def __repr__(self):
1175  """__repr__(FittingSolutionRecord self) -> std::string"""
1176  return _IMP_multifit.FittingSolutionRecord___repr__(self)
1177 
1178  __swig_destroy__ = _IMP_multifit.delete_FittingSolutionRecord
1179  __del__ = lambda self: None
1180 FittingSolutionRecord_swigregister = _IMP_multifit.FittingSolutionRecord_swigregister
1181 FittingSolutionRecord_swigregister(FittingSolutionRecord)
1182 
1183 def FittingSolutionRecord_get_record_header():
1184  """FittingSolutionRecord_get_record_header() -> std::string"""
1185  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1186 
1187 
1188 def pca_based_rigid_fitting(*args):
1189  """
1190  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1191  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1192  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1193  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1194  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1195  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1196  """
1197  return _IMP_multifit.pca_based_rigid_fitting(*args)
1198 
1199 def write_markers(pca, out):
1200  """write_markers(PrincipalComponentAnalysis3D pca, _ostream out)"""
1201  return _IMP_multifit.write_markers(pca, out)
1202 class ComponentHeader(IMP.Object):
1203  """Proxy of C++ IMP::multifit::ComponentHeader class"""
1204  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1205 
1206  def __init__(self):
1207  """__init__(IMP::multifit::ComponentHeader self) -> ComponentHeader"""
1208  this = _IMP_multifit.new_ComponentHeader()
1209  try:
1210  self.this.append(this)
1211  except:
1212  self.this = this
1213 
1214  def set_name(self, name):
1215  """set_name(ComponentHeader self, std::string const & name)"""
1216  return _IMP_multifit.ComponentHeader_set_name(self, name)
1217 
1218 
1219  def get_name(self):
1220  """get_name(ComponentHeader self) -> std::string"""
1221  return _IMP_multifit.ComponentHeader_get_name(self)
1222 
1223 
1224  def get_filename(self):
1225  """get_filename(ComponentHeader self) -> std::string"""
1226  return _IMP_multifit.ComponentHeader_get_filename(self)
1227 
1228 
1229  def set_filename(self, filename):
1230  """set_filename(ComponentHeader self, std::string const & filename)"""
1231  return _IMP_multifit.ComponentHeader_set_filename(self, filename)
1232 
1233 
1234  def get_surface_fn(self):
1235  """get_surface_fn(ComponentHeader self) -> std::string"""
1236  return _IMP_multifit.ComponentHeader_get_surface_fn(self)
1237 
1238 
1239  def set_surface_fn(self, fn):
1240  """set_surface_fn(ComponentHeader self, std::string const & fn)"""
1241  return _IMP_multifit.ComponentHeader_set_surface_fn(self, fn)
1242 
1243 
1244  def set_txt_ap_fn(self, pdb_ap_fn):
1245  """set_txt_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1246  return _IMP_multifit.ComponentHeader_set_txt_ap_fn(self, pdb_ap_fn)
1247 
1248 
1249  def get_txt_ap_fn(self):
1250  """get_txt_ap_fn(ComponentHeader self) -> std::string"""
1251  return _IMP_multifit.ComponentHeader_get_txt_ap_fn(self)
1252 
1253 
1254  def set_txt_fine_ap_fn(self, pdb_ap_fn):
1255  """set_txt_fine_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1256  return _IMP_multifit.ComponentHeader_set_txt_fine_ap_fn(self, pdb_ap_fn)
1257 
1258 
1259  def get_txt_fine_ap_fn(self):
1260  """get_txt_fine_ap_fn(ComponentHeader self) -> std::string"""
1261  return _IMP_multifit.ComponentHeader_get_txt_fine_ap_fn(self)
1262 
1263 
1264  def set_num_ap(self, num_ap):
1265  """set_num_ap(ComponentHeader self, int num_ap)"""
1266  return _IMP_multifit.ComponentHeader_set_num_ap(self, num_ap)
1267 
1268 
1269  def get_num_ap(self):
1270  """get_num_ap(ComponentHeader self) -> int"""
1271  return _IMP_multifit.ComponentHeader_get_num_ap(self)
1272 
1273 
1274  def set_num_fine_ap(self, num_ap):
1275  """set_num_fine_ap(ComponentHeader self, int num_ap)"""
1276  return _IMP_multifit.ComponentHeader_set_num_fine_ap(self, num_ap)
1277 
1278 
1279  def get_num_fine_ap(self):
1280  """get_num_fine_ap(ComponentHeader self) -> int"""
1281  return _IMP_multifit.ComponentHeader_get_num_fine_ap(self)
1282 
1283 
1284  def set_transformations_fn(self, transformations_fn):
1285  """set_transformations_fn(ComponentHeader self, std::string transformations_fn)"""
1286  return _IMP_multifit.ComponentHeader_set_transformations_fn(self, transformations_fn)
1287 
1288 
1289  def get_transformations_fn(self):
1290  """get_transformations_fn(ComponentHeader self) -> std::string"""
1291  return _IMP_multifit.ComponentHeader_get_transformations_fn(self)
1292 
1293 
1294  def set_reference_fn(self, ref_fn):
1295  """set_reference_fn(ComponentHeader self, std::string const & ref_fn)"""
1296  return _IMP_multifit.ComponentHeader_set_reference_fn(self, ref_fn)
1297 
1298 
1299  def get_reference_fn(self):
1300  """get_reference_fn(ComponentHeader self) -> std::string"""
1301  return _IMP_multifit.ComponentHeader_get_reference_fn(self)
1302 
1303 
1304  def get_version_info(self):
1305  """get_version_info(ComponentHeader self) -> VersionInfo"""
1306  return _IMP_multifit.ComponentHeader_get_version_info(self)
1307 
1308 
1309  def __str__(self):
1310  """__str__(ComponentHeader self) -> std::string"""
1311  return _IMP_multifit.ComponentHeader___str__(self)
1312 
1313 
1314  def __repr__(self):
1315  """__repr__(ComponentHeader self) -> std::string"""
1316  return _IMP_multifit.ComponentHeader___repr__(self)
1317 
1318 
1319  @staticmethod
1320  def get_from(o):
1321  return _object_cast_to_ComponentHeader(o)
1322 
1323 ComponentHeader_swigregister = _IMP_multifit.ComponentHeader_swigregister
1324 ComponentHeader_swigregister(ComponentHeader)
1325 
1326 class AssemblyHeader(IMP.Object):
1327  """Proxy of C++ IMP::multifit::AssemblyHeader class"""
1328  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1329 
1330  def __init__(self):
1331  """__init__(IMP::multifit::AssemblyHeader self) -> AssemblyHeader"""
1332  this = _IMP_multifit.new_AssemblyHeader()
1333  try:
1334  self.this.append(this)
1335  except:
1336  self.this = this
1337 
1338  def set_dens_fn(self, dens_fn):
1339  """set_dens_fn(AssemblyHeader self, std::string const & dens_fn)"""
1340  return _IMP_multifit.AssemblyHeader_set_dens_fn(self, dens_fn)
1341 
1342 
1343  def get_dens_fn(self):
1344  """get_dens_fn(AssemblyHeader self) -> std::string"""
1345  return _IMP_multifit.AssemblyHeader_get_dens_fn(self)
1346 
1347 
1348  def set_resolution(self, res):
1349  """set_resolution(AssemblyHeader self, float res)"""
1350  return _IMP_multifit.AssemblyHeader_set_resolution(self, res)
1351 
1352 
1353  def get_resolution(self):
1354  """get_resolution(AssemblyHeader self) -> float"""
1355  return _IMP_multifit.AssemblyHeader_get_resolution(self)
1356 
1357 
1358  def get_spacing(self):
1359  """get_spacing(AssemblyHeader self) -> float"""
1360  return _IMP_multifit.AssemblyHeader_get_spacing(self)
1361 
1362 
1363  def set_spacing(self, spacing):
1364  """set_spacing(AssemblyHeader self, float spacing)"""
1365  return _IMP_multifit.AssemblyHeader_set_spacing(self, spacing)
1366 
1367 
1368  def set_threshold(self, t):
1369  """set_threshold(AssemblyHeader self, float t)"""
1370  return _IMP_multifit.AssemblyHeader_set_threshold(self, t)
1371 
1372 
1373  def get_threshold(self):
1374  """get_threshold(AssemblyHeader self) -> float"""
1375  return _IMP_multifit.AssemblyHeader_get_threshold(self)
1376 
1377 
1378  def get_origin(self):
1379  """get_origin(AssemblyHeader self) -> Vector3D"""
1380  return _IMP_multifit.AssemblyHeader_get_origin(self)
1381 
1382 
1383  def set_origin(self, origin):
1384  """set_origin(AssemblyHeader self, Vector3D origin)"""
1385  return _IMP_multifit.AssemblyHeader_set_origin(self, origin)
1386 
1387 
1388  def get_coarse_ap_fn(self):
1389  """get_coarse_ap_fn(AssemblyHeader self) -> std::string"""
1390  return _IMP_multifit.AssemblyHeader_get_coarse_ap_fn(self)
1391 
1392 
1393  def set_coarse_ap_fn(self, new_fn):
1394  """set_coarse_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1395  return _IMP_multifit.AssemblyHeader_set_coarse_ap_fn(self, new_fn)
1396 
1397 
1398  def get_coarse_over_sampled_ap_fn(self):
1399  """get_coarse_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1400  return _IMP_multifit.AssemblyHeader_get_coarse_over_sampled_ap_fn(self)
1401 
1402 
1403  def set_coarse_over_sampled_ap_fn(self, new_fn):
1404  """set_coarse_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1405  return _IMP_multifit.AssemblyHeader_set_coarse_over_sampled_ap_fn(self, new_fn)
1406 
1407 
1408  def get_fine_ap_fn(self):
1409  """get_fine_ap_fn(AssemblyHeader self) -> std::string"""
1410  return _IMP_multifit.AssemblyHeader_get_fine_ap_fn(self)
1411 
1412 
1413  def set_fine_ap_fn(self, new_fn):
1414  """set_fine_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1415  return _IMP_multifit.AssemblyHeader_set_fine_ap_fn(self, new_fn)
1416 
1417 
1418  def get_fine_over_sampled_ap_fn(self):
1419  """get_fine_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1420  return _IMP_multifit.AssemblyHeader_get_fine_over_sampled_ap_fn(self)
1421 
1422 
1423  def set_fine_over_sampled_ap_fn(self, new_fn):
1424  """set_fine_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1425  return _IMP_multifit.AssemblyHeader_set_fine_over_sampled_ap_fn(self, new_fn)
1426 
1427 
1428  def get_version_info(self):
1429  """get_version_info(AssemblyHeader self) -> VersionInfo"""
1430  return _IMP_multifit.AssemblyHeader_get_version_info(self)
1431 
1432 
1433  def __str__(self):
1434  """__str__(AssemblyHeader self) -> std::string"""
1435  return _IMP_multifit.AssemblyHeader___str__(self)
1436 
1437 
1438  def __repr__(self):
1439  """__repr__(AssemblyHeader self) -> std::string"""
1440  return _IMP_multifit.AssemblyHeader___repr__(self)
1441 
1442 
1443  @staticmethod
1444  def get_from(o):
1445  return _object_cast_to_AssemblyHeader(o)
1446 
1447 AssemblyHeader_swigregister = _IMP_multifit.AssemblyHeader_swigregister
1448 AssemblyHeader_swigregister(AssemblyHeader)
1449 
1450 class SettingsData(IMP.Object):
1451  """Proxy of C++ IMP::multifit::SettingsData class"""
1452  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1453 
1454  def __init__(self):
1455  """__init__(IMP::multifit::SettingsData self) -> SettingsData"""
1456  this = _IMP_multifit.new_SettingsData()
1457  try:
1458  self.this.append(this)
1459  except:
1460  self.this = this
1461 
1462  def show_component_header_line(*args):
1463  """
1464  show_component_header_line(_ostream out)
1465  show_component_header_line()
1466  """
1467  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1468 
1469  show_component_header_line = staticmethod(show_component_header_line)
1470 
1471  def get_component_header_line():
1472  """get_component_header_line() -> std::string"""
1473  return _IMP_multifit.SettingsData_get_component_header_line()
1474 
1475  get_component_header_line = staticmethod(get_component_header_line)
1476 
1477  def show_density_header_line(*args):
1478  """
1479  show_density_header_line(_ostream out)
1480  show_density_header_line()
1481  """
1482  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1483 
1484  show_density_header_line = staticmethod(show_density_header_line)
1485 
1486  def get_density_header_line():
1487  """get_density_header_line() -> std::string"""
1488  return _IMP_multifit.SettingsData_get_density_header_line()
1489 
1490  get_density_header_line = staticmethod(get_density_header_line)
1491 
1492  def set_assembly_filename(self, fn):
1493  """set_assembly_filename(SettingsData self, std::string const & fn)"""
1494  return _IMP_multifit.SettingsData_set_assembly_filename(self, fn)
1495 
1496 
1497  def get_assembly_filename(self):
1498  """get_assembly_filename(SettingsData self) -> char const *"""
1499  return _IMP_multifit.SettingsData_get_assembly_filename(self)
1500 
1501 
1502  def set_assembly_header(self, h):
1503  """set_assembly_header(SettingsData self, AssemblyHeader h)"""
1504  return _IMP_multifit.SettingsData_set_assembly_header(self, h)
1505 
1506 
1507  def get_assembly_header(self):
1508  """get_assembly_header(SettingsData self) -> AssemblyHeader"""
1509  return _IMP_multifit.SettingsData_get_assembly_header(self)
1510 
1511 
1512  def set_data_path(self, fn):
1513  """set_data_path(SettingsData self, std::string const & fn)"""
1514  return _IMP_multifit.SettingsData_set_data_path(self, fn)
1515 
1516 
1517  def get_data_path(self):
1518  """get_data_path(SettingsData self) -> std::string"""
1519  return _IMP_multifit.SettingsData_get_data_path(self)
1520 
1521 
1522  def get_version_info(self):
1523  """get_version_info(SettingsData self) -> VersionInfo"""
1524  return _IMP_multifit.SettingsData_get_version_info(self)
1525 
1526 
1527  def remove_component_header(self, d):
1528  """remove_component_header(SettingsData self, ComponentHeader d)"""
1529  return _IMP_multifit.SettingsData_remove_component_header(self, d)
1530 
1531 
1532  def remove_component_headers(self, d):
1533  """remove_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & d)"""
1534  return _IMP_multifit.SettingsData_remove_component_headers(self, d)
1535 
1536 
1537  def set_component_headers(self, ps):
1538  """set_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & ps)"""
1539  return _IMP_multifit.SettingsData_set_component_headers(self, ps)
1540 
1541 
1542  def set_component_headers_order(self, objs):
1543  """set_component_headers_order(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1544  return _IMP_multifit.SettingsData_set_component_headers_order(self, objs)
1545 
1546 
1547  def add_component_header(self, obj):
1548  """add_component_header(SettingsData self, ComponentHeader obj) -> unsigned int"""
1549  return _IMP_multifit.SettingsData_add_component_header(self, obj)
1550 
1551 
1552  def add_component_headers(self, objs):
1553  """add_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1554  return _IMP_multifit.SettingsData_add_component_headers(self, objs)
1555 
1556 
1557  def clear_component_headers(self):
1558  """clear_component_headers(SettingsData self)"""
1559  return _IMP_multifit.SettingsData_clear_component_headers(self)
1560 
1561 
1562  def get_number_of_component_headers(self):
1563  """get_number_of_component_headers(SettingsData self) -> unsigned int"""
1564  return _IMP_multifit.SettingsData_get_number_of_component_headers(self)
1565 
1566 
1567  def get_has_component_headers(self):
1568  """get_has_component_headers(SettingsData self) -> bool"""
1569  return _IMP_multifit.SettingsData_get_has_component_headers(self)
1570 
1571 
1572  def get_component_header(self, i):
1573  """get_component_header(SettingsData self, unsigned int i) -> ComponentHeader"""
1574  return _IMP_multifit.SettingsData_get_component_header(self, i)
1575 
1576 
1577  def get_component_headers(self):
1578  """get_component_headers(SettingsData self) -> IMP::multifit::ComponentHeaders"""
1579  return _IMP_multifit.SettingsData_get_component_headers(self)
1580 
1581 
1582  def reserve_component_headers(self, sz):
1583  """reserve_component_headers(SettingsData self, unsigned int sz)"""
1584  return _IMP_multifit.SettingsData_reserve_component_headers(self, sz)
1585 
1586 
1587  def __str__(self):
1588  """__str__(SettingsData self) -> std::string"""
1589  return _IMP_multifit.SettingsData___str__(self)
1590 
1591 
1592  def __repr__(self):
1593  """__repr__(SettingsData self) -> std::string"""
1594  return _IMP_multifit.SettingsData___repr__(self)
1595 
1596 
1597  @staticmethod
1598  def get_from(o):
1599  return _object_cast_to_SettingsData(o)
1600 
1601 SettingsData_swigregister = _IMP_multifit.SettingsData_swigregister
1602 SettingsData_swigregister(SettingsData)
1603 
1604 def SettingsData_show_component_header_line(*args):
1605  """
1606  show_component_header_line(_ostream out)
1607  SettingsData_show_component_header_line()
1608  """
1609  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1610 
1611 def SettingsData_get_component_header_line():
1612  """SettingsData_get_component_header_line() -> std::string"""
1613  return _IMP_multifit.SettingsData_get_component_header_line()
1614 
1615 def SettingsData_show_density_header_line(*args):
1616  """
1617  show_density_header_line(_ostream out)
1618  SettingsData_show_density_header_line()
1619  """
1620  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1621 
1622 def SettingsData_get_density_header_line():
1623  """SettingsData_get_density_header_line() -> std::string"""
1624  return _IMP_multifit.SettingsData_get_density_header_line()
1625 
1626 
1627 def read_settings(filename):
1628  """read_settings(char const * filename) -> SettingsData"""
1629  return _IMP_multifit.read_settings(filename)
1630 
1631 def write_settings(filename, sd):
1632  """write_settings(char const * filename, SettingsData sd)"""
1633  return _IMP_multifit.write_settings(filename, sd)
1634 class WeightedExcludedVolumeRestraint(IMP.Restraint):
1635  """Proxy of C++ IMP::multifit::WeightedExcludedVolumeRestraint class"""
1636  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1637 
1638  def __init__(self, *args):
1639  """
1640  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner, FloatKey weight_key) -> WeightedExcludedVolumeRestraint
1641  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner) -> WeightedExcludedVolumeRestraint
1642  """
1643  this = _IMP_multifit.new_WeightedExcludedVolumeRestraint(*args)
1644  try:
1645  self.this.append(this)
1646  except:
1647  self.this = this
1648 
1649  def do_get_inputs(self):
1650  """do_get_inputs(WeightedExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
1651  return _IMP_multifit.WeightedExcludedVolumeRestraint_do_get_inputs(self)
1652 
1653 
1654  def get_version_info(self):
1655  """get_version_info(WeightedExcludedVolumeRestraint self) -> VersionInfo"""
1656  return _IMP_multifit.WeightedExcludedVolumeRestraint_get_version_info(self)
1657 
1658 
1659  def __str__(self):
1660  """__str__(WeightedExcludedVolumeRestraint self) -> std::string"""
1661  return _IMP_multifit.WeightedExcludedVolumeRestraint___str__(self)
1662 
1663 
1664  def __repr__(self):
1665  """__repr__(WeightedExcludedVolumeRestraint self) -> std::string"""
1666  return _IMP_multifit.WeightedExcludedVolumeRestraint___repr__(self)
1667 
1668 
1669  @staticmethod
1670  def get_from(o):
1671  return _object_cast_to_WeightedExcludedVolumeRestraint(o)
1672 
1673 WeightedExcludedVolumeRestraint_swigregister = _IMP_multifit.WeightedExcludedVolumeRestraint_swigregister
1674 WeightedExcludedVolumeRestraint_swigregister(WeightedExcludedVolumeRestraint)
1675 
1676 class FFTFittingOutput(IMP.Object):
1677  """Proxy of C++ IMP::multifit::FFTFittingOutput class"""
1678  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1679 
1680  def __init__(self):
1681  """__init__(IMP::multifit::FFTFittingOutput self) -> FFTFittingOutput"""
1682  this = _IMP_multifit.new_FFTFittingOutput()
1683  try:
1684  self.this.append(this)
1685  except:
1686  self.this = this
1687 
1688  def get_version_info(self):
1689  """get_version_info(FFTFittingOutput self) -> VersionInfo"""
1690  return _IMP_multifit.FFTFittingOutput_get_version_info(self)
1691 
1692  best_fits_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_fits__get, _IMP_multifit.FFTFittingOutput_best_fits__set)
1693  best_trans_per_rot_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_trans_per_rot__get, _IMP_multifit.FFTFittingOutput_best_trans_per_rot__set)
1694 
1695  def __str__(self):
1696  """__str__(FFTFittingOutput self) -> std::string"""
1697  return _IMP_multifit.FFTFittingOutput___str__(self)
1698 
1699 
1700  def __repr__(self):
1701  """__repr__(FFTFittingOutput self) -> std::string"""
1702  return _IMP_multifit.FFTFittingOutput___repr__(self)
1703 
1704 
1705  @staticmethod
1706  def get_from(o):
1707  return _object_cast_to_FFTFittingOutput(o)
1708 
1709 FFTFittingOutput_swigregister = _IMP_multifit.FFTFittingOutput_swigregister
1710 FFTFittingOutput_swigregister(FFTFittingOutput)
1711 
1712 class FFTFitting(IMP.Object):
1713  """Proxy of C++ IMP::multifit::FFTFitting class"""
1714  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1715 
1716  def get_version_info(self):
1717  """get_version_info(FFTFitting self) -> VersionInfo"""
1718  return _IMP_multifit.FFTFitting_get_version_info(self)
1719 
1720 
1721  def __init__(self):
1722  """__init__(IMP::multifit::FFTFitting self) -> FFTFitting"""
1723  this = _IMP_multifit.new_FFTFitting()
1724  try:
1725  self.this.append(this)
1726  except:
1727  self.this = this
1728 
1729  def do_global_fitting(self, *args):
1730  """
1731  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1, std::string const & angles_filename) -> FFTFittingOutput
1732  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1) -> FFTFittingOutput
1733  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True) -> FFTFittingOutput
1734  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle) -> FFTFittingOutput
1735  """
1736  return _IMP_multifit.FFTFitting_do_global_fitting(self, *args)
1737 
1738 
1739  def do_local_fitting(self, *args):
1740  """
1741  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, std::string const & angles_filename) -> FFTFittingOutput
1742  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation) -> FFTFittingOutput
1743  """
1744  return _IMP_multifit.FFTFitting_do_local_fitting(self, *args)
1745 
1746 
1747  def __str__(self):
1748  """__str__(FFTFitting self) -> std::string"""
1749  return _IMP_multifit.FFTFitting___str__(self)
1750 
1751 
1752  def __repr__(self):
1753  """__repr__(FFTFitting self) -> std::string"""
1754  return _IMP_multifit.FFTFitting___repr__(self)
1755 
1756 
1757  @staticmethod
1758  def get_from(o):
1759  return _object_cast_to_FFTFitting(o)
1760 
1761 FFTFitting_swigregister = _IMP_multifit.FFTFitting_swigregister
1762 FFTFitting_swigregister(FFTFitting)
1763 
1764 
1765 def fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad):
1766  """fft_based_rigid_fitting(Hierarchy mol2fit, DensityMap dmap, double density_threshold, double angle_sampling_interval_rad) -> IMP::multifit::FittingSolutionRecords"""
1767  return _IMP_multifit.fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad)
1768 
1769 def remove_background(dmap, threshold, edge_threshold):
1770  """remove_background(DensityMap dmap, float threshold, float edge_threshold) -> DensityMap"""
1771  return _IMP_multifit.remove_background(dmap, threshold, edge_threshold)
1772 
1773 def get_connected_components(dmap, threshold, edge_threshold):
1774  """get_connected_components(DensityMap dmap, float threshold, float edge_threshold) -> IMP::IntsList"""
1775  return _IMP_multifit.get_connected_components(dmap, threshold, edge_threshold)
1776 
1777 def get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename):
1778  """get_segmentation(DensityMap dmap, double apix, double density_threshold, int num_means, std::string const pdb_filename, std::string const cmm_filename, std::string const seg_filename, std::string const txt_filename)"""
1779  return _IMP_multifit.get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename)
1780 class ComplementarityRestraint(IMP.Restraint):
1781  """Proxy of C++ IMP::multifit::ComplementarityRestraint class"""
1782  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1783 
1784  def __init__(self, *args):
1785  """
1786  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b, std::string name) -> ComplementarityRestraint
1787  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> ComplementarityRestraint
1788  """
1789  this = _IMP_multifit.new_ComplementarityRestraint(*args)
1790  try:
1791  self.this.append(this)
1792  except:
1793  self.this = this
1794 
1795  def set_maximum_penetration_score(self, s):
1796  """set_maximum_penetration_score(ComplementarityRestraint self, double s)"""
1797  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration_score(self, s)
1798 
1799 
1800  def set_maximum_penetration(self, d):
1801  """set_maximum_penetration(ComplementarityRestraint self, double d)"""
1802  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration(self, d)
1803 
1804 
1805  def set_maximum_separation(self, s):
1806  """set_maximum_separation(ComplementarityRestraint self, double s)"""
1807  return _IMP_multifit.ComplementarityRestraint_set_maximum_separation(self, s)
1808 
1809 
1810  def set_complementarity_thickness(self, th):
1811  """set_complementarity_thickness(ComplementarityRestraint self, double th)"""
1812  return _IMP_multifit.ComplementarityRestraint_set_complementarity_thickness(self, th)
1813 
1814 
1815  def set_complementarity_value(self, th):
1816  """set_complementarity_value(ComplementarityRestraint self, double th)"""
1817  return _IMP_multifit.ComplementarityRestraint_set_complementarity_value(self, th)
1818 
1819 
1820  def set_interior_layer_thickness(self, th):
1821  """set_interior_layer_thickness(ComplementarityRestraint self, double th)"""
1822  return _IMP_multifit.ComplementarityRestraint_set_interior_layer_thickness(self, th)
1823 
1824 
1825  def set_penetration_coefficient(self, pc):
1826  """set_penetration_coefficient(ComplementarityRestraint self, double pc)"""
1827  return _IMP_multifit.ComplementarityRestraint_set_penetration_coefficient(self, pc)
1828 
1829 
1830  def set_complementarity_coefficient(self, cc):
1831  """set_complementarity_coefficient(ComplementarityRestraint self, double cc)"""
1832  return _IMP_multifit.ComplementarityRestraint_set_complementarity_coefficient(self, cc)
1833 
1834 
1835  def set_boundary_coefficient(self, bc):
1836  """set_boundary_coefficient(ComplementarityRestraint self, double bc)"""
1837  return _IMP_multifit.ComplementarityRestraint_set_boundary_coefficient(self, bc)
1838 
1839 
1840  def get_voxel_size(self):
1841  """get_voxel_size(ComplementarityRestraint self) -> float"""
1842  return _IMP_multifit.ComplementarityRestraint_get_voxel_size(self)
1843 
1844 
1845  def do_get_inputs(self):
1846  """do_get_inputs(ComplementarityRestraint self) -> IMP::ModelObjectsTemp"""
1847  return _IMP_multifit.ComplementarityRestraint_do_get_inputs(self)
1848 
1849 
1850  def get_version_info(self):
1851  """get_version_info(ComplementarityRestraint self) -> VersionInfo"""
1852  return _IMP_multifit.ComplementarityRestraint_get_version_info(self)
1853 
1854 
1855  def __str__(self):
1856  """__str__(ComplementarityRestraint self) -> std::string"""
1857  return _IMP_multifit.ComplementarityRestraint___str__(self)
1858 
1859 
1860  def __repr__(self):
1861  """__repr__(ComplementarityRestraint self) -> std::string"""
1862  return _IMP_multifit.ComplementarityRestraint___repr__(self)
1863 
1864 
1865  @staticmethod
1866  def get_from(o):
1867  return _object_cast_to_ComplementarityRestraint(o)
1868 
1869 ComplementarityRestraint_swigregister = _IMP_multifit.ComplementarityRestraint_swigregister
1870 ComplementarityRestraint_swigregister(ComplementarityRestraint)
1871 
1872 
1873 def read_fitting_solutions(fitting_fn):
1874  """read_fitting_solutions(char const * fitting_fn) -> IMP::multifit::FittingSolutionRecords"""
1875  return _IMP_multifit.read_fitting_solutions(fitting_fn)
1876 
1877 def write_fitting_solutions(fitting_fn, fit_sols, num_sols=-1):
1878  """
1879  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols, int num_sols=-1)
1880  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols)
1881  """
1882  return _IMP_multifit.write_fitting_solutions(fitting_fn, fit_sols, num_sols)
1883 
1884 def convert_em_to_multifit_format(em_fits):
1885  """convert_em_to_multifit_format(FittingSolutions em_fits) -> IMP::multifit::FittingSolutionRecords"""
1886  return _IMP_multifit.convert_em_to_multifit_format(em_fits)
1887 
1888 def convert_multifit_to_em_format(multifit_fits):
1889  """convert_multifit_to_em_format(IMP::multifit::FittingSolutionRecords const & multifit_fits) -> FittingSolutions"""
1890  return _IMP_multifit.convert_multifit_to_em_format(multifit_fits)
1891 
1892 def convert_transformations_to_multifit_format(trans):
1893  """convert_transformations_to_multifit_format(IMP::algebra::Transformation3Ds const & trans) -> IMP::multifit::FittingSolutionRecords"""
1894  return _IMP_multifit.convert_transformations_to_multifit_format(trans)
1895 
1896 def convert_multifit_format_to_transformations(recs):
1897  """convert_multifit_format_to_transformations(IMP::multifit::FittingSolutionRecords const & recs) -> IMP::algebra::Transformation3Ds"""
1898  return _IMP_multifit.convert_multifit_format_to_transformations(recs)
1899 
1900 def get_close_to_point(fit_sols, mh, ap, dist):
1901  """get_close_to_point(IMP::multifit::FittingSolutionRecords const & fit_sols, Hierarchy mh, Particle ap, IMP::Float dist) -> IMP::multifit::FittingSolutionRecords"""
1902  return _IMP_multifit.get_close_to_point(fit_sols, mh, ap, dist)
1903 class ProbabilisticAnchorGraph(IMP.Object):
1904  """Proxy of C++ IMP::multifit::ProbabilisticAnchorGraph class"""
1905  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1906 
1907  def __init__(self, anchor_positions):
1908  """__init__(IMP::multifit::ProbabilisticAnchorGraph self, IMP::algebra::Vector3Ds anchor_positions) -> ProbabilisticAnchorGraph"""
1909  this = _IMP_multifit.new_ProbabilisticAnchorGraph(anchor_positions)
1910  try:
1911  self.this.append(this)
1912  except:
1913  self.this = this
1914 
1915  def add_edge(self, i, j):
1916  """add_edge(ProbabilisticAnchorGraph self, int i, int j)"""
1917  return _IMP_multifit.ProbabilisticAnchorGraph_add_edge(self, i, j)
1918 
1919 
1920  def set_particle_probabilities_on_anchors(self, p, sols):
1921  """set_particle_probabilities_on_anchors(ProbabilisticAnchorGraph self, Particle p, IMP::multifit::FittingSolutionRecords sols)"""
1922  return _IMP_multifit.ProbabilisticAnchorGraph_set_particle_probabilities_on_anchors(self, p, sols)
1923 
1924 
1925  def show(self, *args):
1926  """
1927  show(ProbabilisticAnchorGraph self, _ostream out)
1928  show(ProbabilisticAnchorGraph self)
1929  """
1930  return _IMP_multifit.ProbabilisticAnchorGraph_show(self, *args)
1931 
1932 
1933  def get_number_of_anchors(self):
1934  """get_number_of_anchors(ProbabilisticAnchorGraph self) -> unsigned int"""
1935  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_anchors(self)
1936 
1937 
1938  def get_number_of_edges(self):
1939  """get_number_of_edges(ProbabilisticAnchorGraph self) -> unsigned int"""
1940  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_edges(self)
1941 
1942 
1943  def get_edge_list(self):
1944  """get_edge_list(ProbabilisticAnchorGraph self) -> IMP::IntRanges"""
1945  return _IMP_multifit.ProbabilisticAnchorGraph_get_edge_list(self)
1946 
1947 
1948  def get_anchors(self):
1949  """get_anchors(ProbabilisticAnchorGraph self) -> IMP::algebra::Vector3Ds"""
1950  return _IMP_multifit.ProbabilisticAnchorGraph_get_anchors(self)
1951 
1952 
1953  def get_particle_anchors(self, p, min_prob=0):
1954  """
1955  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p, float min_prob=0) -> IMP::algebra::Vector3Ds
1956  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p) -> IMP::algebra::Vector3Ds
1957  """
1958  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_anchors(self, p, min_prob)
1959 
1960 
1961  def get_are_probabilities_for_particle_set(self, p):
1962  """get_are_probabilities_for_particle_set(ProbabilisticAnchorGraph self, Particle p) -> bool"""
1963  return _IMP_multifit.ProbabilisticAnchorGraph_get_are_probabilities_for_particle_set(self, p)
1964 
1965 
1966  def get_particle_probabilities(self, p):
1967  """get_particle_probabilities(ProbabilisticAnchorGraph self, Particle p) -> IMP::Floats"""
1968  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_probabilities(self, p)
1969 
1970 
1971  def get_version_info(self):
1972  """get_version_info(ProbabilisticAnchorGraph self) -> VersionInfo"""
1973  return _IMP_multifit.ProbabilisticAnchorGraph_get_version_info(self)
1974 
1975 
1976  def __str__(self):
1977  """__str__(ProbabilisticAnchorGraph self) -> std::string"""
1978  return _IMP_multifit.ProbabilisticAnchorGraph___str__(self)
1979 
1980 
1981  def __repr__(self):
1982  """__repr__(ProbabilisticAnchorGraph self) -> std::string"""
1983  return _IMP_multifit.ProbabilisticAnchorGraph___repr__(self)
1984 
1985 
1986  @staticmethod
1987  def get_from(o):
1988  return _object_cast_to_ProbabilisticAnchorGraph(o)
1989 
1990 ProbabilisticAnchorGraph_swigregister = _IMP_multifit.ProbabilisticAnchorGraph_swigregister
1991 ProbabilisticAnchorGraph_swigregister(ProbabilisticAnchorGraph)
1992 
1993 class ProteinRecordData(object):
1994  """Proxy of C++ IMP::multifit::ProteinRecordData class"""
1995  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1996 
1997  def reset_all(self):
1998  """reset_all(ProteinRecordData self)"""
1999  return _IMP_multifit.ProteinRecordData_reset_all(self)
2000 
2001 
2002  def __init__(self, *args):
2003  """
2004  __init__(IMP::multifit::ProteinRecordData self) -> ProteinRecordData
2005  __init__(IMP::multifit::ProteinRecordData self, std::string const & name) -> ProteinRecordData
2006  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, std::string const fn) -> ProteinRecordData
2007  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const fn) -> ProteinRecordData
2008  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const & fn, std::string const & surface_fn, std::string const & ref_fn) -> ProteinRecordData
2009  """
2010  this = _IMP_multifit.new_ProteinRecordData(*args)
2011  try:
2012  self.this.append(this)
2013  except:
2014  self.this = this
2015 
2016  def show(self, *args):
2017  """
2018  show(ProteinRecordData self, _ostream out)
2019  show(ProteinRecordData self)
2020  """
2021  return _IMP_multifit.ProteinRecordData_show(self, *args)
2022 
2023  name_ = _swig_property(_IMP_multifit.ProteinRecordData_name__get, _IMP_multifit.ProteinRecordData_name__set)
2024  start_res_ = _swig_property(_IMP_multifit.ProteinRecordData_start_res__get, _IMP_multifit.ProteinRecordData_start_res__set)
2025  end_res_ = _swig_property(_IMP_multifit.ProteinRecordData_end_res__get, _IMP_multifit.ProteinRecordData_end_res__set)
2026  filename_ = _swig_property(_IMP_multifit.ProteinRecordData_filename__get, _IMP_multifit.ProteinRecordData_filename__set)
2027  surface_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_surface_filename__get, _IMP_multifit.ProteinRecordData_surface_filename__set)
2028  ref_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_ref_filename__get, _IMP_multifit.ProteinRecordData_ref_filename__set)
2029 
2030  def __str__(self):
2031  """__str__(ProteinRecordData self) -> std::string"""
2032  return _IMP_multifit.ProteinRecordData___str__(self)
2033 
2034 
2035  def __repr__(self):
2036  """__repr__(ProteinRecordData self) -> std::string"""
2037  return _IMP_multifit.ProteinRecordData___repr__(self)
2038 
2039  __swig_destroy__ = _IMP_multifit.delete_ProteinRecordData
2040  __del__ = lambda self: None
2041 ProteinRecordData_swigregister = _IMP_multifit.ProteinRecordData_swigregister
2042 ProteinRecordData_swigregister(ProteinRecordData)
2043 
2044 class ProteomicsData(IMP.Object):
2045  """Proxy of C++ IMP::multifit::ProteomicsData class"""
2046  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2047 
2048  def __init__(self):
2049  """__init__(IMP::multifit::ProteomicsData self) -> ProteomicsData"""
2050  this = _IMP_multifit.new_ProteomicsData()
2051  try:
2052  self.this.append(this)
2053  except:
2054  self.this = this
2055 
2056  def add_protein(self, *args):
2057  """
2058  add_protein(ProteomicsData self, std::string name, int start_res, int end_res, std::string const & mol_fn, std::string const & surface_fn, std::string const & ref_fn) -> int
2059  add_protein(ProteomicsData self, ProteinRecordData rec) -> int
2060  """
2061  return _IMP_multifit.ProteomicsData_add_protein(self, *args)
2062 
2063 
2064  def find(self, name):
2065  """find(ProteomicsData self, std::string const & name) -> int"""
2066  return _IMP_multifit.ProteomicsData_find(self, name)
2067 
2068 
2069  def add_interaction(self, ii, used_for_filter, linker_len):
2070  """add_interaction(ProteomicsData self, IMP::Ints const & ii, bool used_for_filter, float linker_len)"""
2071  return _IMP_multifit.ProteomicsData_add_interaction(self, ii, used_for_filter, linker_len)
2072 
2073 
2074  def add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len):
2075  """add_cross_link_interaction(ProteomicsData self, IMP::Int prot1, IMP::Int res1, IMP::Int prot2, IMP::Int res2, bool used_in_filter, IMP::Float linker_len)"""
2076  return _IMP_multifit.ProteomicsData_add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len)
2077 
2078 
2079  def add_ev_pair(self, prot1, prot2):
2080  """add_ev_pair(ProteomicsData self, IMP::Int prot1, IMP::Int prot2)"""
2081  return _IMP_multifit.ProteomicsData_add_ev_pair(self, prot1, prot2)
2082 
2083 
2084  def get_number_of_proteins(self):
2085  """get_number_of_proteins(ProteomicsData self) -> int"""
2086  return _IMP_multifit.ProteomicsData_get_number_of_proteins(self)
2087 
2088 
2089  def get_number_of_interactions(self):
2090  """get_number_of_interactions(ProteomicsData self) -> int"""
2091  return _IMP_multifit.ProteomicsData_get_number_of_interactions(self)
2092 
2093 
2094  def get_interaction(self, interaction_ind):
2095  """get_interaction(ProteomicsData self, int interaction_ind) -> IMP::Ints"""
2096  return _IMP_multifit.ProteomicsData_get_interaction(self, interaction_ind)
2097 
2098 
2099  def get_interaction_part_of_filter(self, interaction_ind):
2100  """get_interaction_part_of_filter(ProteomicsData self, int interaction_ind) -> bool"""
2101  return _IMP_multifit.ProteomicsData_get_interaction_part_of_filter(self, interaction_ind)
2102 
2103 
2104  def get_interaction_linker_length(self, interaction_ind):
2105  """get_interaction_linker_length(ProteomicsData self, int interaction_ind) -> int"""
2106  return _IMP_multifit.ProteomicsData_get_interaction_linker_length(self, interaction_ind)
2107 
2108 
2109  def get_number_of_cross_links(self):
2110  """get_number_of_cross_links(ProteomicsData self) -> int"""
2111  return _IMP_multifit.ProteomicsData_get_number_of_cross_links(self)
2112 
2113 
2114  def get_cross_link(self, xlink_ind):
2115  """get_cross_link(ProteomicsData self, int xlink_ind) -> std::pair< IMP::IntPair,IMP::IntPair >"""
2116  return _IMP_multifit.ProteomicsData_get_cross_link(self, xlink_ind)
2117 
2118 
2119  def get_cross_link_part_of_filter(self, xlink_ind):
2120  """get_cross_link_part_of_filter(ProteomicsData self, int xlink_ind) -> bool"""
2121  return _IMP_multifit.ProteomicsData_get_cross_link_part_of_filter(self, xlink_ind)
2122 
2123 
2124  def get_cross_link_length(self, xlink_ind):
2125  """get_cross_link_length(ProteomicsData self, int xlink_ind) -> float"""
2126  return _IMP_multifit.ProteomicsData_get_cross_link_length(self, xlink_ind)
2127 
2128 
2129  def get_number_of_ev_pairs(self):
2130  """get_number_of_ev_pairs(ProteomicsData self) -> int"""
2131  return _IMP_multifit.ProteomicsData_get_number_of_ev_pairs(self)
2132 
2133 
2134  def get_ev_pair(self, ev_ind):
2135  """get_ev_pair(ProteomicsData self, int ev_ind) -> IMP::IntPair"""
2136  return _IMP_multifit.ProteomicsData_get_ev_pair(self, ev_ind)
2137 
2138 
2139  def get_protein_name(self, protein_ind):
2140  """get_protein_name(ProteomicsData self, int protein_ind) -> std::string"""
2141  return _IMP_multifit.ProteomicsData_get_protein_name(self, protein_ind)
2142 
2143 
2144  def get_end_res(self, protein_ind):
2145  """get_end_res(ProteomicsData self, int protein_ind) -> int"""
2146  return _IMP_multifit.ProteomicsData_get_end_res(self, protein_ind)
2147 
2148 
2149  def get_start_res(self, protein_ind):
2150  """get_start_res(ProteomicsData self, int protein_ind) -> int"""
2151  return _IMP_multifit.ProteomicsData_get_start_res(self, protein_ind)
2152 
2153 
2154  def get_protein_filename(self, protein_ind):
2155  """get_protein_filename(ProteomicsData self, int protein_ind) -> std::string"""
2156  return _IMP_multifit.ProteomicsData_get_protein_filename(self, protein_ind)
2157 
2158 
2159  def get_reference_filename(self, protein_ind):
2160  """get_reference_filename(ProteomicsData self, int protein_ind) -> std::string"""
2161  return _IMP_multifit.ProteomicsData_get_reference_filename(self, protein_ind)
2162 
2163 
2164  def get_surface_filename(self, protein_ind):
2165  """get_surface_filename(ProteomicsData self, int protein_ind) -> std::string"""
2166  return _IMP_multifit.ProteomicsData_get_surface_filename(self, protein_ind)
2167 
2168 
2169  def get_protein_data(self, protein_ind):
2170  """get_protein_data(ProteomicsData self, int protein_ind) -> ProteinRecordData"""
2171  return _IMP_multifit.ProteomicsData_get_protein_data(self, protein_ind)
2172 
2173 
2174  def get_version_info(self):
2175  """get_version_info(ProteomicsData self) -> VersionInfo"""
2176  return _IMP_multifit.ProteomicsData_get_version_info(self)
2177 
2178 
2179  def get_num_allowed_violated_interactions(self):
2180  """get_num_allowed_violated_interactions(ProteomicsData self) -> int"""
2181  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_interactions(self)
2182 
2183 
2184  def set_num_allowed_violated_interactions(self, n):
2185  """set_num_allowed_violated_interactions(ProteomicsData self, int n)"""
2186  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_interactions(self, n)
2187 
2188 
2189  def get_num_allowed_violated_cross_links(self):
2190  """get_num_allowed_violated_cross_links(ProteomicsData self) -> int"""
2191  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_cross_links(self)
2192 
2193 
2194  def set_num_allowed_violated_cross_links(self, n):
2195  """set_num_allowed_violated_cross_links(ProteomicsData self, int n)"""
2196  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_cross_links(self, n)
2197 
2198 
2199  def get_num_allowed_violated_ev(self):
2200  """get_num_allowed_violated_ev(ProteomicsData self) -> int"""
2201  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_ev(self)
2202 
2203 
2204  def set_num_allowed_violated_ev(self, n):
2205  """set_num_allowed_violated_ev(ProteomicsData self, int n)"""
2206  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_ev(self, n)
2207 
2208 
2209  def __str__(self):
2210  """__str__(ProteomicsData self) -> std::string"""
2211  return _IMP_multifit.ProteomicsData___str__(self)
2212 
2213 
2214  def __repr__(self):
2215  """__repr__(ProteomicsData self) -> std::string"""
2216  return _IMP_multifit.ProteomicsData___repr__(self)
2217 
2218 
2219  @staticmethod
2220  def get_from(o):
2221  return _object_cast_to_ProteomicsData(o)
2222 
2223 ProteomicsData_swigregister = _IMP_multifit.ProteomicsData_swigregister
2224 ProteomicsData_swigregister(ProteomicsData)
2225 
2226 
2227 def read_proteomics_data(proteomics_fn):
2228  """read_proteomics_data(char const * proteomics_fn) -> ProteomicsData"""
2229  return _IMP_multifit.read_proteomics_data(proteomics_fn)
2230 
2231 def get_partial_proteomics_data(pd, prot_names):
2232  """get_partial_proteomics_data(ProteomicsData pd, IMP::Strings const & prot_names) -> ProteomicsData"""
2233  return _IMP_multifit.get_partial_proteomics_data(pd, prot_names)
2234 class AnchorsData(object):
2235  """Proxy of C++ IMP::multifit::AnchorsData class"""
2236  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2237 
2238  def __init__(self, *args):
2239  """
2240  __init__(IMP::multifit::AnchorsData self) -> AnchorsData
2241  __init__(IMP::multifit::AnchorsData self, IMP::algebra::Vector3Ds points, IMP::IntPairs edges) -> AnchorsData
2242  """
2243  this = _IMP_multifit.new_AnchorsData(*args)
2244  try:
2245  self.this.append(this)
2246  except:
2247  self.this = this
2248 
2249  def remove_edges_for_node(self, node_ind):
2250  """remove_edges_for_node(AnchorsData self, int node_ind)"""
2251  return _IMP_multifit.AnchorsData_remove_edges_for_node(self, node_ind)
2252 
2253 
2254  def get_number_of_points(self):
2255  """get_number_of_points(AnchorsData self) -> int"""
2256  return _IMP_multifit.AnchorsData_get_number_of_points(self)
2257 
2258 
2259  def get_number_of_edges(self):
2260  """get_number_of_edges(AnchorsData self) -> int"""
2261  return _IMP_multifit.AnchorsData_get_number_of_edges(self)
2262 
2263 
2264  def get_is_point_considered(self, node_ind):
2265  """get_is_point_considered(AnchorsData self, int node_ind) -> bool"""
2266  return _IMP_multifit.AnchorsData_get_is_point_considered(self, node_ind)
2267 
2268 
2269  def show(self, *args):
2270  """
2271  show(AnchorsData self, _ostream out)
2272  show(AnchorsData self)
2273  """
2274  return _IMP_multifit.AnchorsData_show(self, *args)
2275 
2276 
2277  def get_secondary_structure_is_set(self):
2278  """get_secondary_structure_is_set(AnchorsData self) -> bool"""
2279  return _IMP_multifit.AnchorsData_get_secondary_structure_is_set(self)
2280 
2281 
2282  def setup_secondary_structure(self, mdl):
2283  """setup_secondary_structure(AnchorsData self, Model mdl)"""
2284  return _IMP_multifit.AnchorsData_setup_secondary_structure(self, mdl)
2285 
2286 
2287  def set_secondary_structure_probabilities(self, *args):
2288  """
2289  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps, IMP::Ints const & indices)
2290  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps)
2291  """
2292  return _IMP_multifit.AnchorsData_set_secondary_structure_probabilities(self, *args)
2293 
2294 
2295  def get_secondary_structure_particles(self):
2296  """get_secondary_structure_particles(AnchorsData self) -> IMP::Particles"""
2297  return _IMP_multifit.AnchorsData_get_secondary_structure_particles(self)
2298 
2299  points_ = _swig_property(_IMP_multifit.AnchorsData_points__get, _IMP_multifit.AnchorsData_points__set)
2300  consider_point_ = _swig_property(_IMP_multifit.AnchorsData_consider_point__get, _IMP_multifit.AnchorsData_consider_point__set)
2301  edges_ = _swig_property(_IMP_multifit.AnchorsData_edges__get, _IMP_multifit.AnchorsData_edges__set)
2302 
2303  def __str__(self):
2304  """__str__(AnchorsData self) -> std::string"""
2305  return _IMP_multifit.AnchorsData___str__(self)
2306 
2307 
2308  def __repr__(self):
2309  """__repr__(AnchorsData self) -> std::string"""
2310  return _IMP_multifit.AnchorsData___repr__(self)
2311 
2312  __swig_destroy__ = _IMP_multifit.delete_AnchorsData
2313  __del__ = lambda self: None
2314 AnchorsData_swigregister = _IMP_multifit.AnchorsData_swigregister
2315 AnchorsData_swigregister(AnchorsData)
2316 
2317 
2318 def read_anchors_data(txt_filename):
2319  """read_anchors_data(char const * txt_filename) -> AnchorsData"""
2320  return _IMP_multifit.read_anchors_data(txt_filename)
2321 
2322 def write_txt(txt_filename, ad):
2323  """write_txt(std::string const & txt_filename, AnchorsData ad)"""
2324  return _IMP_multifit.write_txt(txt_filename, ad)
2325 
2326 def write_cmm(cmm_filename, marker_set_name, dpa):
2327  """write_cmm(std::string const & cmm_filename, std::string const & marker_set_name, AnchorsData dpa)"""
2328  return _IMP_multifit.write_cmm(cmm_filename, marker_set_name, dpa)
2329 
2330 def create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius):
2331  """create_coarse_molecule_from_density(DensityMap dmap, float dens_threshold, int num_beads, Model mdl, float bead_radius) -> Hierarchy"""
2332  return _IMP_multifit.create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius)
2333 
2334 def create_hit_map(rb, rb_ref, sols, damp):
2335  """create_hit_map(RigidBody rb, Refiner rb_ref, IMP::multifit::FittingSolutionRecords const & sols, DensityMap damp) -> DensityMap"""
2336  return _IMP_multifit.create_hit_map(rb, rb_ref, sols, damp)
2337 
2338 def get_points_close_to_molecule(mh, points, max_dist):
2339  """get_points_close_to_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2340  return _IMP_multifit.get_points_close_to_molecule(mh, points, max_dist)
2341 
2342 def get_points_far_from_molecule(mh, points, max_dist):
2343  """get_points_far_from_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2344  return _IMP_multifit.get_points_far_from_molecule(mh, points, max_dist)
2345 class RadiusOfGyrationRestraint(IMP.Restraint):
2346  """Proxy of C++ IMP::multifit::RadiusOfGyrationRestraint class"""
2347  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2348 
2349  def __init__(self, ps, num_residues, scale=1.):
2350  """
2351  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues, IMP::Float scale=1.) -> RadiusOfGyrationRestraint
2352  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues) -> RadiusOfGyrationRestraint
2353  """
2354  this = _IMP_multifit.new_RadiusOfGyrationRestraint(ps, num_residues, scale)
2355  try:
2356  self.this.append(this)
2357  except:
2358  self.this = this
2359 
2360  def do_get_inputs(self):
2361  """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::ModelObjectsTemp"""
2362  return _IMP_multifit.RadiusOfGyrationRestraint_do_get_inputs(self)
2363 
2364 
2365  def get_version_info(self):
2366  """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
2367  return _IMP_multifit.RadiusOfGyrationRestraint_get_version_info(self)
2368 
2369 
2370  def set_radius_of_gyration(self, r):
2371  """set_radius_of_gyration(RadiusOfGyrationRestraint self, IMP::Float r)"""
2372  return _IMP_multifit.RadiusOfGyrationRestraint_set_radius_of_gyration(self, r)
2373 
2374 
2375  def get_radius_of_gyration(self):
2376  """get_radius_of_gyration(RadiusOfGyrationRestraint self) -> IMP::Float"""
2377  return _IMP_multifit.RadiusOfGyrationRestraint_get_radius_of_gyration(self)
2378 
2379 
2380  def __str__(self):
2381  """__str__(RadiusOfGyrationRestraint self) -> std::string"""
2382  return _IMP_multifit.RadiusOfGyrationRestraint___str__(self)
2383 
2384 
2385  def __repr__(self):
2386  """__repr__(RadiusOfGyrationRestraint self) -> std::string"""
2387  return _IMP_multifit.RadiusOfGyrationRestraint___repr__(self)
2388 
2389 
2390  @staticmethod
2391  def get_from(o):
2392  return _object_cast_to_RadiusOfGyrationRestraint(o)
2393 
2394 RadiusOfGyrationRestraint_swigregister = _IMP_multifit.RadiusOfGyrationRestraint_swigregister
2395 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
2396 
2397 
2398 def get_approximated_radius_of_gyration(len):
2399  """get_approximated_radius_of_gyration(int len) -> float"""
2400  return _IMP_multifit.get_approximated_radius_of_gyration(len)
2401 
2402 def get_actual_radius_of_gyration(ps):
2403  """get_actual_radius_of_gyration(IMP::ParticlesTemp ps) -> float"""
2404  return _IMP_multifit.get_actual_radius_of_gyration(ps)
2405 
2406 def get_approximated_radius(len):
2407  """get_approximated_radius(int len) -> float"""
2408  return _IMP_multifit.get_approximated_radius(len)
2409 class ProteinsAnchorsSamplingSpace(object):
2410  """Proxy of C++ IMP::multifit::ProteinsAnchorsSamplingSpace class"""
2411  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2412 
2413  def __init__(self, prots=None):
2414  """
2415  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self, ProteomicsData prots=None) -> ProteinsAnchorsSamplingSpace
2416  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self) -> ProteinsAnchorsSamplingSpace
2417  """
2418  this = _IMP_multifit.new_ProteinsAnchorsSamplingSpace(prots)
2419  try:
2420  self.this.append(this)
2421  except:
2422  self.this = this
2423 
2424  def set_anchors(self, data):
2425  """set_anchors(ProteinsAnchorsSamplingSpace self, AnchorsData data)"""
2426  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors(self, data)
2427 
2428 
2429  def get_anchors(self):
2430  """get_anchors(ProteinsAnchorsSamplingSpace self) -> AnchorsData"""
2431  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors(self)
2432 
2433 
2434  def get_anchors_filename(self):
2435  """get_anchors_filename(ProteinsAnchorsSamplingSpace self) -> std::string"""
2436  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors_filename(self)
2437 
2438 
2439  def set_anchors_filename(self, fn):
2440  """set_anchors_filename(ProteinsAnchorsSamplingSpace self, std::string const & fn)"""
2441  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors_filename(self, fn)
2442 
2443 
2444  def get_proteomics_data(self):
2445  """get_proteomics_data(ProteinsAnchorsSamplingSpace self) -> ProteomicsData"""
2446  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_proteomics_data(self)
2447 
2448 
2449  def add_protein(self, rec):
2450  """add_protein(ProteinsAnchorsSamplingSpace self, ProteinRecordData rec)"""
2451  return _IMP_multifit.ProteinsAnchorsSamplingSpace_add_protein(self, rec)
2452 
2453 
2454  def get_paths_for_protein(self, prot_name):
2455  """get_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> IMP::IntsList"""
2456  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_for_protein(self, prot_name)
2457 
2458 
2459  def set_paths_filename_for_protein(self, prot_name, paths_filename):
2460  """set_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, std::string const & paths_filename)"""
2461  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_filename_for_protein(self, prot_name, paths_filename)
2462 
2463 
2464  def get_paths_filename_for_protein(self, prot_name):
2465  """get_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> std::string"""
2466  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_filename_for_protein(self, prot_name)
2467 
2468 
2469  def set_paths_for_protein(self, prot_name, paths):
2470  """set_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, IMP::IntsList paths)"""
2471  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_for_protein(self, prot_name, paths)
2472 
2473 
2474  def show(self, *args):
2475  """
2476  show(ProteinsAnchorsSamplingSpace self, _ostream s)
2477  show(ProteinsAnchorsSamplingSpace self)
2478  """
2479  return _IMP_multifit.ProteinsAnchorsSamplingSpace_show(self, *args)
2480 
2481 
2482  def __str__(self):
2483  """__str__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2484  return _IMP_multifit.ProteinsAnchorsSamplingSpace___str__(self)
2485 
2486 
2487  def __repr__(self):
2488  """__repr__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2489  return _IMP_multifit.ProteinsAnchorsSamplingSpace___repr__(self)
2490 
2491  __swig_destroy__ = _IMP_multifit.delete_ProteinsAnchorsSamplingSpace
2492  __del__ = lambda self: None
2493 ProteinsAnchorsSamplingSpace_swigregister = _IMP_multifit.ProteinsAnchorsSamplingSpace_swigregister
2494 ProteinsAnchorsSamplingSpace_swigregister(ProteinsAnchorsSamplingSpace)
2495 
2496 
2497 def read_protein_anchors_mapping(*args):
2498  """
2499  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn, int max_paths) -> ProteinsAnchorsSamplingSpace
2500  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn) -> ProteinsAnchorsSamplingSpace
2501  """
2502  return _IMP_multifit.read_protein_anchors_mapping(*args)
2503 
2504 def write_protein_anchors_mapping(*args):
2505  """
2506  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, std::string const & anchors_fn, std::vector< std::pair< IMP::String,IMP::String >,std::allocator< std::pair< IMP::String,IMP::String > > > const & prot_paths)
2507  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, ProteinsAnchorsSamplingSpace pa, IMP::Strings const & prot_names)
2508  """
2509  return _IMP_multifit.write_protein_anchors_mapping(*args)
2510 
2511 def get_part_of_sampling_space(prots_ss, prot_names):
2512  """get_part_of_sampling_space(ProteinsAnchorsSamplingSpace prots_ss, IMP::Strings const & prot_names) -> ProteinsAnchorsSamplingSpace"""
2513  return _IMP_multifit.get_part_of_sampling_space(prots_ss, prot_names)
2514 
2515 def get_partial_assembly_setting_data(prots_sd, prot_names):
2516  """get_partial_assembly_setting_data(SettingsData prots_sd, IMP::Strings const & prot_names) -> SettingsData"""
2517  return _IMP_multifit.get_partial_assembly_setting_data(prots_sd, prot_names)
2518 
2519 def read_paths(*args):
2520  """
2521  read_paths(char const * txt_filename, int max_paths) -> IMP::IntsList
2522  read_paths(char const * txt_filename) -> IMP::IntsList
2523  """
2524  return _IMP_multifit.read_paths(*args)
2525 
2526 def write_paths(paths, txt_filename):
2527  """write_paths(IMP::IntsList const & paths, std::string const & txt_filename)"""
2528  return _IMP_multifit.write_paths(paths, txt_filename)
2529 
2530 def molecule2anchors(mh, k):
2531  """molecule2anchors(Hierarchy mh, int k) -> AnchorsData"""
2532  return _IMP_multifit.molecule2anchors(mh, k)
2533 
2534 def get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename):
2535  """get_anchors_for_density(DensityMap dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)"""
2536  return _IMP_multifit.get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename)
2537 
2538 def get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd=0.7):
2539  """
2540  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs, IMP::Float max_rmsd=0.7) -> IMP::IntsList
2541  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs) -> IMP::IntsList
2542  """
2543  return _IMP_multifit.get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd)
2544 class DominoParams(object):
2545  """Proxy of C++ IMP::multifit::DominoParams class"""
2546  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2547 
2548  def __init__(self):
2549  """__init__(IMP::multifit::DominoParams self) -> DominoParams"""
2550  this = _IMP_multifit.new_DominoParams()
2551  try:
2552  self.this.append(this)
2553  except:
2554  self.this = this
2555 
2556  def add(self, pt):
2557  """add(DominoParams self, boost::property_tree::ptree const & pt)"""
2558  return _IMP_multifit.DominoParams_add(self, pt)
2559 
2560 
2561  def show(self, *args):
2562  """
2563  show(DominoParams self, _ostream s)
2564  show(DominoParams self)
2565  """
2566  return _IMP_multifit.DominoParams_show(self, *args)
2567 
2568  max_value_threshold_ = _swig_property(_IMP_multifit.DominoParams_max_value_threshold__get, _IMP_multifit.DominoParams_max_value_threshold__set)
2569  max_num_states_for_subset_ = _swig_property(_IMP_multifit.DominoParams_max_num_states_for_subset__get, _IMP_multifit.DominoParams_max_num_states_for_subset__set)
2570  max_anchor_penetration_ = _swig_property(_IMP_multifit.DominoParams_max_anchor_penetration__get, _IMP_multifit.DominoParams_max_anchor_penetration__set)
2571  heap_size_ = _swig_property(_IMP_multifit.DominoParams_heap_size__get, _IMP_multifit.DominoParams_heap_size__set)
2572  cache_size_ = _swig_property(_IMP_multifit.DominoParams_cache_size__get, _IMP_multifit.DominoParams_cache_size__set)
2573 
2574  def __str__(self):
2575  """__str__(DominoParams self) -> std::string"""
2576  return _IMP_multifit.DominoParams___str__(self)
2577 
2578 
2579  def __repr__(self):
2580  """__repr__(DominoParams self) -> std::string"""
2581  return _IMP_multifit.DominoParams___repr__(self)
2582 
2583  __swig_destroy__ = _IMP_multifit.delete_DominoParams
2584  __del__ = lambda self: None
2585 DominoParams_swigregister = _IMP_multifit.DominoParams_swigregister
2586 DominoParams_swigregister(DominoParams)
2587 
2588 class XlinkParams(object):
2589  """Proxy of C++ IMP::multifit::XlinkParams class"""
2590  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2591 
2592  def __init__(self):
2593  """__init__(IMP::multifit::XlinkParams self) -> XlinkParams"""
2594  this = _IMP_multifit.new_XlinkParams()
2595  try:
2596  self.this.append(this)
2597  except:
2598  self.this = this
2599 
2600  def add(self, pt):
2601  """add(XlinkParams self, boost::property_tree::ptree const & pt)"""
2602  return _IMP_multifit.XlinkParams_add(self, pt)
2603 
2604 
2605  def show(self, *args):
2606  """
2607  show(XlinkParams self, _ostream s)
2608  show(XlinkParams self)
2609  """
2610  return _IMP_multifit.XlinkParams_show(self, *args)
2611 
2612  upper_bound_ = _swig_property(_IMP_multifit.XlinkParams_upper_bound__get, _IMP_multifit.XlinkParams_upper_bound__set)
2613  k_ = _swig_property(_IMP_multifit.XlinkParams_k__get, _IMP_multifit.XlinkParams_k__set)
2614  max_xlink_val_ = _swig_property(_IMP_multifit.XlinkParams_max_xlink_val__get, _IMP_multifit.XlinkParams_max_xlink_val__set)
2615  treat_between_residues_ = _swig_property(_IMP_multifit.XlinkParams_treat_between_residues__get, _IMP_multifit.XlinkParams_treat_between_residues__set)
2616 
2617  def __str__(self):
2618  """__str__(XlinkParams self) -> std::string"""
2619  return _IMP_multifit.XlinkParams___str__(self)
2620 
2621 
2622  def __repr__(self):
2623  """__repr__(XlinkParams self) -> std::string"""
2624  return _IMP_multifit.XlinkParams___repr__(self)
2625 
2626  __swig_destroy__ = _IMP_multifit.delete_XlinkParams
2627  __del__ = lambda self: None
2628 XlinkParams_swigregister = _IMP_multifit.XlinkParams_swigregister
2629 XlinkParams_swigregister(XlinkParams)
2630 
2631 class ConnectivityParams(object):
2632  """Proxy of C++ IMP::multifit::ConnectivityParams class"""
2633  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2634 
2635  def __init__(self):
2636  """__init__(IMP::multifit::ConnectivityParams self) -> ConnectivityParams"""
2637  this = _IMP_multifit.new_ConnectivityParams()
2638  try:
2639  self.this.append(this)
2640  except:
2641  self.this = this
2642 
2643  def add(self, pt):
2644  """add(ConnectivityParams self, boost::property_tree::ptree const & pt)"""
2645  return _IMP_multifit.ConnectivityParams_add(self, pt)
2646 
2647 
2648  def show(self, *args):
2649  """
2650  show(ConnectivityParams self, _ostream s)
2651  show(ConnectivityParams self)
2652  """
2653  return _IMP_multifit.ConnectivityParams_show(self, *args)
2654 
2655  upper_bound_ = _swig_property(_IMP_multifit.ConnectivityParams_upper_bound__get, _IMP_multifit.ConnectivityParams_upper_bound__set)
2656  k_ = _swig_property(_IMP_multifit.ConnectivityParams_k__get, _IMP_multifit.ConnectivityParams_k__set)
2657  max_conn_rest_val_ = _swig_property(_IMP_multifit.ConnectivityParams_max_conn_rest_val__get, _IMP_multifit.ConnectivityParams_max_conn_rest_val__set)
2658 
2659  def __str__(self):
2660  """__str__(ConnectivityParams self) -> std::string"""
2661  return _IMP_multifit.ConnectivityParams___str__(self)
2662 
2663 
2664  def __repr__(self):
2665  """__repr__(ConnectivityParams self) -> std::string"""
2666  return _IMP_multifit.ConnectivityParams___repr__(self)
2667 
2668  __swig_destroy__ = _IMP_multifit.delete_ConnectivityParams
2669  __del__ = lambda self: None
2670 ConnectivityParams_swigregister = _IMP_multifit.ConnectivityParams_swigregister
2671 ConnectivityParams_swigregister(ConnectivityParams)
2672 
2673 class FragmentsParams(object):
2674  """Proxy of C++ IMP::multifit::FragmentsParams class"""
2675  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2676 
2677  def __init__(self):
2678  """__init__(IMP::multifit::FragmentsParams self) -> FragmentsParams"""
2679  this = _IMP_multifit.new_FragmentsParams()
2680  try:
2681  self.this.append(this)
2682  except:
2683  self.this = this
2684 
2685  def add(self, pt):
2686  """add(FragmentsParams self, boost::property_tree::ptree const & pt)"""
2687  return _IMP_multifit.FragmentsParams_add(self, pt)
2688 
2689 
2690  def show(self, *args):
2691  """
2692  show(FragmentsParams self, _ostream s)
2693  show(FragmentsParams self)
2694  """
2695  return _IMP_multifit.FragmentsParams_show(self, *args)
2696 
2697  frag_len_ = _swig_property(_IMP_multifit.FragmentsParams_frag_len__get, _IMP_multifit.FragmentsParams_frag_len__set)
2698  bead_radius_scale_ = _swig_property(_IMP_multifit.FragmentsParams_bead_radius_scale__get, _IMP_multifit.FragmentsParams_bead_radius_scale__set)
2699  load_atomic_ = _swig_property(_IMP_multifit.FragmentsParams_load_atomic__get, _IMP_multifit.FragmentsParams_load_atomic__set)
2700  subunit_rigid_ = _swig_property(_IMP_multifit.FragmentsParams_subunit_rigid__get, _IMP_multifit.FragmentsParams_subunit_rigid__set)
2701 
2702  def __str__(self):
2703  """__str__(FragmentsParams self) -> std::string"""
2704  return _IMP_multifit.FragmentsParams___str__(self)
2705 
2706 
2707  def __repr__(self):
2708  """__repr__(FragmentsParams self) -> std::string"""
2709  return _IMP_multifit.FragmentsParams___repr__(self)
2710 
2711  __swig_destroy__ = _IMP_multifit.delete_FragmentsParams
2712  __del__ = lambda self: None
2713 FragmentsParams_swigregister = _IMP_multifit.FragmentsParams_swigregister
2714 FragmentsParams_swigregister(FragmentsParams)
2715 
2716 class RogParams(object):
2717  """Proxy of C++ IMP::multifit::RogParams class"""
2718  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2719 
2720  def __init__(self):
2721  """__init__(IMP::multifit::RogParams self) -> RogParams"""
2722  this = _IMP_multifit.new_RogParams()
2723  try:
2724  self.this.append(this)
2725  except:
2726  self.this = this
2727 
2728  def add(self, pt):
2729  """add(RogParams self, boost::property_tree::ptree const & pt)"""
2730  return _IMP_multifit.RogParams_add(self, pt)
2731 
2732 
2733  def get_max_score(self):
2734  """get_max_score(RogParams self) -> float"""
2735  return _IMP_multifit.RogParams_get_max_score(self)
2736 
2737 
2738  def get_scale(self):
2739  """get_scale(RogParams self) -> float"""
2740  return _IMP_multifit.RogParams_get_scale(self)
2741 
2742 
2743  def show(self, *args):
2744  """
2745  show(RogParams self, _ostream s)
2746  show(RogParams self)
2747  """
2748  return _IMP_multifit.RogParams_show(self, *args)
2749 
2750 
2751  def __str__(self):
2752  """__str__(RogParams self) -> std::string"""
2753  return _IMP_multifit.RogParams___str__(self)
2754 
2755 
2756  def __repr__(self):
2757  """__repr__(RogParams self) -> std::string"""
2758  return _IMP_multifit.RogParams___repr__(self)
2759 
2760  __swig_destroy__ = _IMP_multifit.delete_RogParams
2761  __del__ = lambda self: None
2762 RogParams_swigregister = _IMP_multifit.RogParams_swigregister
2763 RogParams_swigregister(RogParams)
2764 
2765 class EVParams(object):
2766  """Proxy of C++ IMP::multifit::EVParams class"""
2767  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2768 
2769  def __init__(self):
2770  """__init__(IMP::multifit::EVParams self) -> EVParams"""
2771  this = _IMP_multifit.new_EVParams()
2772  try:
2773  self.this.append(this)
2774  except:
2775  self.this = this
2776 
2777  def add(self, pt):
2778  """add(EVParams self, boost::property_tree::ptree const & pt)"""
2779  return _IMP_multifit.EVParams_add(self, pt)
2780 
2781 
2782  def show(self, *args):
2783  """
2784  show(EVParams self, _ostream s)
2785  show(EVParams self)
2786  """
2787  return _IMP_multifit.EVParams_show(self, *args)
2788 
2789  pair_distance_ = _swig_property(_IMP_multifit.EVParams_pair_distance__get, _IMP_multifit.EVParams_pair_distance__set)
2790  pair_slack_ = _swig_property(_IMP_multifit.EVParams_pair_slack__get, _IMP_multifit.EVParams_pair_slack__set)
2791  hlb_mean_ = _swig_property(_IMP_multifit.EVParams_hlb_mean__get, _IMP_multifit.EVParams_hlb_mean__set)
2792  hlb_k_ = _swig_property(_IMP_multifit.EVParams_hlb_k__get, _IMP_multifit.EVParams_hlb_k__set)
2793  maximum_ev_score_for_pair_ = _swig_property(_IMP_multifit.EVParams_maximum_ev_score_for_pair__get, _IMP_multifit.EVParams_maximum_ev_score_for_pair__set)
2794  allowed_percentage_of_bad_pairs_ = _swig_property(_IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__get, _IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__set)
2795  scoring_mode_ = _swig_property(_IMP_multifit.EVParams_scoring_mode__get, _IMP_multifit.EVParams_scoring_mode__set)
2796 
2797  def __str__(self):
2798  """__str__(EVParams self) -> std::string"""
2799  return _IMP_multifit.EVParams___str__(self)
2800 
2801 
2802  def __repr__(self):
2803  """__repr__(EVParams self) -> std::string"""
2804  return _IMP_multifit.EVParams___repr__(self)
2805 
2806  __swig_destroy__ = _IMP_multifit.delete_EVParams
2807  __del__ = lambda self: None
2808 EVParams_swigregister = _IMP_multifit.EVParams_swigregister
2809 EVParams_swigregister(EVParams)
2810 
2811 class FiltersParams(object):
2812  """Proxy of C++ IMP::multifit::FiltersParams class"""
2813  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2814 
2815  def __init__(self):
2816  """__init__(IMP::multifit::FiltersParams self) -> FiltersParams"""
2817  this = _IMP_multifit.new_FiltersParams()
2818  try:
2819  self.this.append(this)
2820  except:
2821  self.this = this
2822 
2823  def add(self, pt):
2824  """add(FiltersParams self, boost::property_tree::ptree const & pt)"""
2825  return _IMP_multifit.FiltersParams_add(self, pt)
2826 
2827 
2828  def show(self, *args):
2829  """
2830  show(FiltersParams self, _ostream s)
2831  show(FiltersParams self)
2832  """
2833  return _IMP_multifit.FiltersParams_show(self, *args)
2834 
2835  max_num_violated_xlink_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_xlink__get, _IMP_multifit.FiltersParams_max_num_violated_xlink__set)
2836  max_num_violated_conn_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_conn__get, _IMP_multifit.FiltersParams_max_num_violated_conn__set)
2837  max_num_violated_ev_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_ev__get, _IMP_multifit.FiltersParams_max_num_violated_ev__set)
2838 
2839  def __str__(self):
2840  """__str__(FiltersParams self) -> std::string"""
2841  return _IMP_multifit.FiltersParams___str__(self)
2842 
2843 
2844  def __repr__(self):
2845  """__repr__(FiltersParams self) -> std::string"""
2846  return _IMP_multifit.FiltersParams___repr__(self)
2847 
2848  __swig_destroy__ = _IMP_multifit.delete_FiltersParams
2849  __del__ = lambda self: None
2850 FiltersParams_swigregister = _IMP_multifit.FiltersParams_swigregister
2851 FiltersParams_swigregister(FiltersParams)
2852 
2853 class FittingParams(object):
2854  """Proxy of C++ IMP::multifit::FittingParams class"""
2855  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2856 
2857  def __init__(self):
2858  """__init__(IMP::multifit::FittingParams self) -> FittingParams"""
2859  this = _IMP_multifit.new_FittingParams()
2860  try:
2861  self.this.append(this)
2862  except:
2863  self.this = this
2864 
2865  def add(self, pt):
2866  """add(FittingParams self, boost::property_tree::ptree const & pt)"""
2867  return _IMP_multifit.FittingParams_add(self, pt)
2868 
2869 
2870  def show(self, *args):
2871  """
2872  show(FittingParams self, _ostream s)
2873  show(FittingParams self)
2874  """
2875  return _IMP_multifit.FittingParams_show(self, *args)
2876 
2877  pca_max_angle_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_angle_diff__get, _IMP_multifit.FittingParams_pca_max_angle_diff__set)
2878  pca_max_size_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_size_diff__get, _IMP_multifit.FittingParams_pca_max_size_diff__set)
2879  pca_max_cent_dist_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_cent_dist_diff__get, _IMP_multifit.FittingParams_pca_max_cent_dist_diff__set)
2880  max_asmb_fit_score_ = _swig_property(_IMP_multifit.FittingParams_max_asmb_fit_score__get, _IMP_multifit.FittingParams_max_asmb_fit_score__set)
2881 
2882  def __str__(self):
2883  """__str__(FittingParams self) -> std::string"""
2884  return _IMP_multifit.FittingParams___str__(self)
2885 
2886 
2887  def __repr__(self):
2888  """__repr__(FittingParams self) -> std::string"""
2889  return _IMP_multifit.FittingParams___repr__(self)
2890 
2891  __swig_destroy__ = _IMP_multifit.delete_FittingParams
2892  __del__ = lambda self: None
2893 FittingParams_swigregister = _IMP_multifit.FittingParams_swigregister
2894 FittingParams_swigregister(FittingParams)
2895 
2896 class ComplementarityParams(object):
2897  """Proxy of C++ IMP::multifit::ComplementarityParams class"""
2898  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2899 
2900  def __init__(self):
2901  """__init__(IMP::multifit::ComplementarityParams self) -> ComplementarityParams"""
2902  this = _IMP_multifit.new_ComplementarityParams()
2903  try:
2904  self.this.append(this)
2905  except:
2906  self.this = this
2907 
2908  def add(self, pt):
2909  """add(ComplementarityParams self, boost::property_tree::ptree const & pt)"""
2910  return _IMP_multifit.ComplementarityParams_add(self, pt)
2911 
2912 
2913  def show(self, *args):
2914  """
2915  show(ComplementarityParams self, _ostream s)
2916  show(ComplementarityParams self)
2917  """
2918  return _IMP_multifit.ComplementarityParams_show(self, *args)
2919 
2920  max_score_ = _swig_property(_IMP_multifit.ComplementarityParams_max_score__get, _IMP_multifit.ComplementarityParams_max_score__set)
2921  max_penetration_ = _swig_property(_IMP_multifit.ComplementarityParams_max_penetration__get, _IMP_multifit.ComplementarityParams_max_penetration__set)
2922  interior_layer_thickness_ = _swig_property(_IMP_multifit.ComplementarityParams_interior_layer_thickness__get, _IMP_multifit.ComplementarityParams_interior_layer_thickness__set)
2923  boundary_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_boundary_coef__get, _IMP_multifit.ComplementarityParams_boundary_coef__set)
2924  comp_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_comp_coef__get, _IMP_multifit.ComplementarityParams_comp_coef__set)
2925  penetration_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_penetration_coef__get, _IMP_multifit.ComplementarityParams_penetration_coef__set)
2926 
2927  def __str__(self):
2928  """__str__(ComplementarityParams self) -> std::string"""
2929  return _IMP_multifit.ComplementarityParams___str__(self)
2930 
2931 
2932  def __repr__(self):
2933  """__repr__(ComplementarityParams self) -> std::string"""
2934  return _IMP_multifit.ComplementarityParams___repr__(self)
2935 
2936  __swig_destroy__ = _IMP_multifit.delete_ComplementarityParams
2937  __del__ = lambda self: None
2938 ComplementarityParams_swigregister = _IMP_multifit.ComplementarityParams_swigregister
2939 ComplementarityParams_swigregister(ComplementarityParams)
2940 
2941 class AlignmentParams(object):
2942  """Proxy of C++ IMP::multifit::AlignmentParams class"""
2943  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2944 
2945  def __init__(self, param_filename):
2946  """__init__(IMP::multifit::AlignmentParams self, char const * param_filename) -> AlignmentParams"""
2947  this = _IMP_multifit.new_AlignmentParams(param_filename)
2948  try:
2949  self.this.append(this)
2950  except:
2951  self.this = this
2952 
2953  def get_domino_params(self):
2954  """get_domino_params(AlignmentParams self) -> DominoParams"""
2955  return _IMP_multifit.AlignmentParams_get_domino_params(self)
2956 
2957 
2958  def get_fitting_params(self):
2959  """get_fitting_params(AlignmentParams self) -> FittingParams"""
2960  return _IMP_multifit.AlignmentParams_get_fitting_params(self)
2961 
2962 
2963  def get_complementarity_params(self):
2964  """get_complementarity_params(AlignmentParams self) -> ComplementarityParams"""
2965  return _IMP_multifit.AlignmentParams_get_complementarity_params(self)
2966 
2967 
2968  def get_xlink_params(self):
2969  """get_xlink_params(AlignmentParams self) -> XlinkParams"""
2970  return _IMP_multifit.AlignmentParams_get_xlink_params(self)
2971 
2972 
2973  def get_connectivity_params(self):
2974  """get_connectivity_params(AlignmentParams self) -> ConnectivityParams"""
2975  return _IMP_multifit.AlignmentParams_get_connectivity_params(self)
2976 
2977 
2978  def get_rog_params(self):
2979  """get_rog_params(AlignmentParams self) -> RogParams"""
2980  return _IMP_multifit.AlignmentParams_get_rog_params(self)
2981 
2982 
2983  def get_fragments_params(self):
2984  """get_fragments_params(AlignmentParams self) -> FragmentsParams"""
2985  return _IMP_multifit.AlignmentParams_get_fragments_params(self)
2986 
2987 
2988  def get_filters_params(self):
2989  """get_filters_params(AlignmentParams self) -> FiltersParams"""
2990  return _IMP_multifit.AlignmentParams_get_filters_params(self)
2991 
2992 
2993  def get_ev_params(self):
2994  """get_ev_params(AlignmentParams self) -> EVParams"""
2995  return _IMP_multifit.AlignmentParams_get_ev_params(self)
2996 
2997 
2998  def show(self, *args):
2999  """
3000  show(AlignmentParams self, _ostream s)
3001  show(AlignmentParams self)
3002  """
3003  return _IMP_multifit.AlignmentParams_show(self, *args)
3004 
3005 
3006  def __str__(self):
3007  """__str__(AlignmentParams self) -> std::string"""
3008  return _IMP_multifit.AlignmentParams___str__(self)
3009 
3010 
3011  def __repr__(self):
3012  """__repr__(AlignmentParams self) -> std::string"""
3013  return _IMP_multifit.AlignmentParams___repr__(self)
3014 
3015  __swig_destroy__ = _IMP_multifit.delete_AlignmentParams
3016  __del__ = lambda self: None
3017 AlignmentParams_swigregister = _IMP_multifit.AlignmentParams_swigregister
3018 AlignmentParams_swigregister(AlignmentParams)
3019 
3020 class ProteomicsEMAlignmentAtomic(IMP.Object):
3021  """Proxy of C++ IMP::multifit::ProteomicsEMAlignmentAtomic class"""
3022  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3023 
3024  def __init__(self, mapping_data, asmb_data, align_param):
3025  """__init__(IMP::multifit::ProteomicsEMAlignmentAtomic self, ProteinsAnchorsSamplingSpace mapping_data, SettingsData asmb_data, AlignmentParams align_param) -> ProteomicsEMAlignmentAtomic"""
3026  this = _IMP_multifit.new_ProteomicsEMAlignmentAtomic(mapping_data, asmb_data, align_param)
3027  try:
3028  self.this.append(this)
3029  except:
3030  self.this = this
3031 
3032  def align(self):
3033  """align(ProteomicsEMAlignmentAtomic self)"""
3034  return _IMP_multifit.ProteomicsEMAlignmentAtomic_align(self)
3035 
3036 
3037  def add_all_restraints(self):
3038  """add_all_restraints(ProteomicsEMAlignmentAtomic self)"""
3039  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_all_restraints(self)
3040 
3041 
3042  def get_restraint_set(self):
3043  """get_restraint_set(ProteomicsEMAlignmentAtomic self) -> RestraintSet"""
3044  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_restraint_set(self)
3045 
3046 
3047  def add_states_and_filters(self):
3048  """add_states_and_filters(ProteomicsEMAlignmentAtomic self)"""
3049  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_states_and_filters(self)
3050 
3051 
3052  def show_domino_merge_tree(self):
3053  """show_domino_merge_tree(ProteomicsEMAlignmentAtomic self)"""
3054  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_domino_merge_tree(self)
3055 
3056 
3057  def get_combinations(self, uniques=False):
3058  """
3059  get_combinations(ProteomicsEMAlignmentAtomic self, bool uniques=False) -> IMP::domino::Assignments
3060  get_combinations(ProteomicsEMAlignmentAtomic self) -> IMP::domino::Assignments
3061  """
3062  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_combinations(self, uniques)
3063 
3064 
3065  def set_density_map(self, dmap, threshold):
3066  """set_density_map(ProteomicsEMAlignmentAtomic self, DensityMap dmap, float threshold)"""
3067  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_density_map(self, dmap, threshold)
3068 
3069 
3070  def get_molecules(self):
3071  """get_molecules(ProteomicsEMAlignmentAtomic self) -> IMP::atom::Hierarchies"""
3072  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_molecules(self)
3073 
3074 
3075  def get_rigid_bodies(self):
3076  """get_rigid_bodies(ProteomicsEMAlignmentAtomic self) -> IMP::core::RigidBodies"""
3077  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_rigid_bodies(self)
3078 
3079 
3080  def load_combination_of_states(self, state4particles):
3081  """load_combination_of_states(ProteomicsEMAlignmentAtomic self, IMP::Ints const & state4particles)"""
3082  return _IMP_multifit.ProteomicsEMAlignmentAtomic_load_combination_of_states(self, state4particles)
3083 
3084 
3085  def show_scores_header(self, *args):
3086  """
3087  show_scores_header(ProteomicsEMAlignmentAtomic self, _ostream ous)
3088  show_scores_header(ProteomicsEMAlignmentAtomic self)
3089  """
3090  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_scores_header(self, *args)
3091 
3092 
3093  def get_model(self):
3094  """get_model(ProteomicsEMAlignmentAtomic self) -> Model"""
3095  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_model(self)
3096 
3097 
3098  def set_fast_scoring(self, state):
3099  """set_fast_scoring(ProteomicsEMAlignmentAtomic self, bool state)"""
3100  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_fast_scoring(self, state)
3101 
3102 
3103  def get_version_info(self):
3104  """get_version_info(ProteomicsEMAlignmentAtomic self) -> VersionInfo"""
3105  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_version_info(self)
3106 
3107 
3108  def __str__(self):
3109  """__str__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3110  return _IMP_multifit.ProteomicsEMAlignmentAtomic___str__(self)
3111 
3112 
3113  def __repr__(self):
3114  """__repr__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3115  return _IMP_multifit.ProteomicsEMAlignmentAtomic___repr__(self)
3116 
3117 
3118  @staticmethod
3119  def get_from(o):
3120  return _object_cast_to_ProteomicsEMAlignmentAtomic(o)
3121 
3122 ProteomicsEMAlignmentAtomic_swigregister = _IMP_multifit.ProteomicsEMAlignmentAtomic_swigregister
3123 ProteomicsEMAlignmentAtomic_swigregister(ProteomicsEMAlignmentAtomic)
3124 
3125 
3126 def write_connolly_surface(atoms, fn, density, probe_radius):
3127  """write_connolly_surface(IMP::atom::Atoms atoms, TextOutput fn, float density, float probe_radius)"""
3128  return _IMP_multifit.write_connolly_surface(atoms, fn, density, probe_radius)
3129 class Ensemble(IMP.Object):
3130  """Proxy of C++ IMP::multifit::Ensemble class"""
3131  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3132 
3133  def load_combination(self, fit_comb):
3134  """load_combination(Ensemble self, IMP::Ints fit_comb)"""
3135  return _IMP_multifit.Ensemble_load_combination(self, fit_comb)
3136 
3137 
3138  def unload_combination(self, fit_comb):
3139  """unload_combination(Ensemble self, IMP::Ints fit_comb)"""
3140  return _IMP_multifit.Ensemble_unload_combination(self, fit_comb)
3141 
3142 
3143  def add_component_and_fits(self, mh, fits):
3144  """add_component_and_fits(Ensemble self, Hierarchy mh, IMP::multifit::FittingSolutionRecords const & fits)"""
3145  return _IMP_multifit.Ensemble_add_component_and_fits(self, mh, fits)
3146 
3147 
3148  def get_molecules(self):
3149  """get_molecules(Ensemble self) -> IMP::atom::Hierarchies"""
3150  return _IMP_multifit.Ensemble_get_molecules(self)
3151 
3152 
3153  def get_rigid_bodies(self):
3154  """get_rigid_bodies(Ensemble self) -> IMP::core::RigidBodies"""
3155  return _IMP_multifit.Ensemble_get_rigid_bodies(self)
3156 
3157 
3158  def get_rmsd(self, second_xyz):
3159  """get_rmsd(Ensemble self, IMP::core::XYZs const & second_xyz) -> float"""
3160  return _IMP_multifit.Ensemble_get_rmsd(self, second_xyz)
3161 
3162 
3163  def __init__(self, sd, mapping_data):
3164  """__init__(IMP::multifit::Ensemble self, SettingsData sd, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3165  this = _IMP_multifit.new_Ensemble(sd, mapping_data)
3166  try:
3167  self.this.append(this)
3168  except:
3169  self.this = this
3170 
3171  def score_by_restraints(self, rs, combinations):
3172  """score_by_restraints(Ensemble self, IMP::Restraints rs, IMP::IntsList const & combinations) -> std::vector< IMP::Floats,std::allocator< IMP::Floats > >"""
3173  return _IMP_multifit.Ensemble_score_by_restraints(self, rs, combinations)
3174 
3175 
3176  def get_version_info(self):
3177  """get_version_info(Ensemble self) -> VersionInfo"""
3178  return _IMP_multifit.Ensemble_get_version_info(self)
3179 
3180 
3181  def __str__(self):
3182  """__str__(Ensemble self) -> std::string"""
3183  return _IMP_multifit.Ensemble___str__(self)
3184 
3185 
3186  def __repr__(self):
3187  """__repr__(Ensemble self) -> std::string"""
3188  return _IMP_multifit.Ensemble___repr__(self)
3189 
3190 
3191  @staticmethod
3192  def get_from(o):
3193  return _object_cast_to_Ensemble(o)
3194 
3195 Ensemble_swigregister = _IMP_multifit.Ensemble_swigregister
3196 Ensemble_swigregister(Ensemble)
3197 
3198 
3199 def load_ensemble(sd, mdl, mapping_data):
3200  """load_ensemble(SettingsData sd, Model mdl, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3201  return _IMP_multifit.load_ensemble(sd, mdl, mapping_data)
3202 class RigidLeavesRefiner(IMP.Refiner):
3203  """Proxy of C++ IMP::multifit::RigidLeavesRefiner class"""
3204  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3205 
3206  def __init__(self, *args):
3207  """
3208  __init__(IMP::multifit::RigidLeavesRefiner self, std::string name) -> RigidLeavesRefiner
3209  __init__(IMP::multifit::RigidLeavesRefiner self) -> RigidLeavesRefiner
3210  """
3211  this = _IMP_multifit.new_RigidLeavesRefiner(*args)
3212  try:
3213  self.this.append(this)
3214  except:
3215  self.this = this
3216 
3217  def do_get_inputs(self, m, pis):
3218  """do_get_inputs(RigidLeavesRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3219  return _IMP_multifit.RigidLeavesRefiner_do_get_inputs(self, m, pis)
3220 
3221 
3222  def get_version_info(self):
3223  """get_version_info(RigidLeavesRefiner self) -> VersionInfo"""
3224  return _IMP_multifit.RigidLeavesRefiner_get_version_info(self)
3225 
3226 
3227  def __str__(self):
3228  """__str__(RigidLeavesRefiner self) -> std::string"""
3229  return _IMP_multifit.RigidLeavesRefiner___str__(self)
3230 
3231 
3232  def __repr__(self):
3233  """__repr__(RigidLeavesRefiner self) -> std::string"""
3234  return _IMP_multifit.RigidLeavesRefiner___repr__(self)
3235 
3236 
3237  @staticmethod
3238  def get_from(o):
3239  return _object_cast_to_RigidLeavesRefiner(o)
3240 
3241 RigidLeavesRefiner_swigregister = _IMP_multifit.RigidLeavesRefiner_swigregister
3242 RigidLeavesRefiner_swigregister(RigidLeavesRefiner)
3243 
3244 
3245 _all_commands = ["param", "anchors", "fit_fft", "cluster", "add_fit_rmsd",
3246  "indexes", "proteomics", "align", "models", "transforms",
3247  "score", "merge_tree", "reference", "refine_fft", "segment"]
3248 
3249 
3250 def get_module_version():
3251  """get_module_version() -> std::string const"""
3252  return _IMP_multifit.get_module_version()
3253 
3254 def get_example_path(fname):
3255  """get_example_path(std::string fname) -> std::string"""
3256  return _IMP_multifit.get_example_path(fname)
3257 
3258 def get_data_path(fname):
3259  """get_data_path(std::string fname) -> std::string"""
3260  return _IMP_multifit.get_data_path(fname)
3261 
3262 from . import _version_check
3263 _version_check.check_version(get_module_version())
3264 __version__ = get_module_version()
3265 
3266 
3267 
IMP::multifit::get_anchor_indices_matching_secondary_structure
IntsList get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
Get lists of anchors that match a sequence of secondary structures.
IMP::multifit::get_close_to_point
FittingSolutionRecords get_close_to_point(const FittingSolutionRecords &fit_sols, atom::Hierarchy mh, IMP::Particle *ap, Float dist)
prune solutions by distance to an anchor point
IMP::modeller::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::multifit::get_connected_components
IntsList get_connected_components(em::DensityMap *dmap, float threshold, float edge_threshold)
Return connected components based on density values.
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::multifit::remove_background
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
IMP::multifit::get_part_of_sampling_space
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
IMP::modeller::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::modeller::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::multifit::get_partial_assembly_setting_data
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::multifit::pca_based_rigid_fitting
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
IMP::statistics
Code to compute statistical measures.
IMP::multifit::add_surface_index
void add_surface_index(core::Hierarchy mhd, Float apix, FloatKey shell_key=FloatKey("surf_ind"), FloatKey radius_key=core::XYZR::get_radius_key(), FloatKey weight_key=atom::Mass::get_mass_key())
Add shell index to leaves.
IMP::domino::get_index
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::multifit::get_anchors_for_density
void get_anchors_for_density(em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
Generate anchors in several formats for a given density map.
IMP::algebra::get_rmsd
double get_rmsd(const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2)
Definition: algebra/distance.h:47
IMP::algebra::get_radius_of_gyration
double get_radius_of_gyration(const Vector3Ds &ps)
Return the radius of gyration of a set of points.
Definition: Vector3D.h:77
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::multifit::write_fitting_solutions
void write_fitting_solutions(const char *fitting_fn, const FittingSolutionRecords &fit_sols, int num_sols=-1)
Write fitting solutions to a file.
IMP::multifit::read_proteomics_data
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
IMP::multifit::create_weighted_excluded_volume_restraint
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
IMP::multifit::get_points_close_to_molecule
algebra::Vector3Ds get_points_close_to_molecule(const atom::Hierarchy &mh, const algebra::Vector3Ds points, Float max_dist)
IMP::multifit::get_segmentation
void get_segmentation(em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
Segment a density map using the anchor graph.
IMP::multifit::write_connolly_surface
void write_connolly_surface(atom::Atoms atoms, TextOutput fn, float density, float probe_radius)
Write the Connolly surface for a set of atoms to a file.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:410
IMP::multifit::fft_based_rigid_fitting
multifit::FittingSolutionRecords fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad)
FFT fit of a molecule in the density.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::multifit::read_paths
IntsList read_paths(const char *txt_filename, int max_paths=INT_MAX)
Read paths.
IMP::multifit::read_fitting_solutions
FittingSolutionRecords read_fitting_solutions(const char *fitting_fn)
Fitting solutions reader.
IMP::Refiner
Abstract class to implement hierarchical methods.
Definition: Refiner.h:34
IMP::atom::get_resolution
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53
IMP::multifit::create_coarse_molecule_from_density
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.