mpi/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.7
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.


# This wrapper is part of IMP,
# Copyright 2007-2022 IMP Inventors. All rights reserved.

from __future__ import print_function, division, absolute_import





from sys import version_info
if version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_mpi', [dirname(__file__)])
        except ImportError:
            import _IMP_mpi
            return _IMP_mpi
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_mpi', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_mpi = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_mpi
del version_info
try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.


def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        object.__setattr__(self, name, value)
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr_nondynamic(self, class_type, name, static=1):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    if (not static):
        return object.__getattr__(self, name)
    else:
        raise AttributeError(name)

def _swig_getattr(self, class_type, name):
    return _swig_getattr_nondynamic(self, class_type, name, 0)


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except AttributeError:
    class _object:
        pass
    _newclass = 0



def _swig_setattr_nondynamic_method(set):
    def set_attr(self, name, value):
        if (name == "thisown"):
            return self.this.own(value)
        if hasattr(self, name) or (name == "this"):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add attributes to %s" % self)
    return set_attr


try:
    import weakref
    weakref_proxy = weakref.proxy
except:
    weakref_proxy = lambda x: x


class IMP_MPI_SwigPyIterator(object):
    """Proxy of C++ swig::IMP_MPI_SwigPyIterator class"""
    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_mpi.delete_IMP_MPI_SwigPyIterator
    __del__ = lambda self: None

    def value(self):
        """value(IMP_MPI_SwigPyIterator self) -> PyObject *"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_value(self)


    def incr(self, n=1):
        """
        incr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
        incr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
        """
        return _IMP_mpi.IMP_MPI_SwigPyIterator_incr(self, n)


    def decr(self, n=1):
        """
        decr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
        decr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
        """
        return _IMP_mpi.IMP_MPI_SwigPyIterator_decr(self, n)


    def distance(self, x):
        """distance(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_distance(self, x)


    def equal(self, x):
        """equal(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_equal(self, x)


    def copy(self):
        """copy(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_copy(self)


    def next(self):
        """next(IMP_MPI_SwigPyIterator self) -> PyObject *"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_next(self)


    def __next__(self):
        """__next__(IMP_MPI_SwigPyIterator self) -> PyObject *"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___next__(self)


    def previous(self):
        """previous(IMP_MPI_SwigPyIterator self) -> PyObject *"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_previous(self)


    def advance(self, n):
        """advance(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator_advance(self, n)


    def __eq__(self, x):
        """__eq__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___eq__(self, x)


    def __ne__(self, x):
        """__ne__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___ne__(self, x)


    def __iadd__(self, n):
        """__iadd__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___iadd__(self, n)


    def __isub__(self, n):
        """__isub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___isub__(self, n)


    def __add__(self, n):
        """__add__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
        return _IMP_mpi.IMP_MPI_SwigPyIterator___add__(self, n)


    def __sub__(self, *args):
        """
        __sub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator
        __sub__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_mpi.IMP_MPI_SwigPyIterator___sub__(self, *args)

    def __iter__(self):
        return self
IMP_MPI_SwigPyIterator_swigregister = _IMP_mpi.IMP_MPI_SwigPyIterator_swigregister
IMP_MPI_SwigPyIterator_swigregister(IMP_MPI_SwigPyIterator)


_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]


_IMP_mpi.IMP_DEBUG_swigconstant(_IMP_mpi)
IMP_DEBUG = _IMP_mpi.IMP_DEBUG

_IMP_mpi.IMP_RELEASE_swigconstant(_IMP_mpi)
IMP_RELEASE = _IMP_mpi.IMP_RELEASE

_IMP_mpi.IMP_SILENT_swigconstant(_IMP_mpi)
IMP_SILENT = _IMP_mpi.IMP_SILENT

_IMP_mpi.IMP_PROGRESS_swigconstant(_IMP_mpi)
IMP_PROGRESS = _IMP_mpi.IMP_PROGRESS

_IMP_mpi.IMP_TERSE_swigconstant(_IMP_mpi)
IMP_TERSE = _IMP_mpi.IMP_TERSE

_IMP_mpi.IMP_VERBOSE_swigconstant(_IMP_mpi)
IMP_VERBOSE = _IMP_mpi.IMP_VERBOSE

_IMP_mpi.IMP_MEMORY_swigconstant(_IMP_mpi)
IMP_MEMORY = _IMP_mpi.IMP_MEMORY

_IMP_mpi.IMP_NONE_swigconstant(_IMP_mpi)
IMP_NONE = _IMP_mpi.IMP_NONE

_IMP_mpi.IMP_USAGE_swigconstant(_IMP_mpi)
IMP_USAGE = _IMP_mpi.IMP_USAGE

_IMP_mpi.IMP_INTERNAL_swigconstant(_IMP_mpi)
IMP_INTERNAL = _IMP_mpi.IMP_INTERNAL

_IMP_mpi.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_LOG4CXX = _IMP_mpi.IMP_KERNEL_HAS_LOG4CXX

_IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_mpi)
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR

_IMP_mpi.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_mpi)
IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_mpi.IMP_COMPILER_HAS_RANDOM_SHUFFLE

_IMP_mpi.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_mpi)
IMP_COMPILER_HAS_THREE_WAY = _IMP_mpi.IMP_COMPILER_HAS_THREE_WAY

_IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM

_IMP_mpi.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_NUMPY = _IMP_mpi.IMP_KERNEL_HAS_NUMPY

_IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_GPERFTOOLS = _IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS

_IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER

_IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_mpi)
IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER

_IMP_mpi.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_mpi)
IMPKERNEL_SHOW_WARNINGS = _IMP_mpi.IMPKERNEL_SHOW_WARNINGS

import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    """Proxy of C++ std::ostream class"""
    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_mpi._ostream_write(self, osa_buf)

_ostream_swigregister = _IMP_mpi._ostream_swigregister
_ostream_swigregister(_ostream)


_IMP_mpi.IMP_HAS_NOEXCEPT_swigconstant(_IMP_mpi)
IMP_HAS_NOEXCEPT = _IMP_mpi.IMP_HAS_NOEXCEPT

_IMP_mpi.IMP_C_OPEN_BINARY_swigconstant(_IMP_mpi)
IMP_C_OPEN_BINARY = _IMP_mpi.IMP_C_OPEN_BINARY
import IMP

_IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_mpi)
IMP_MPI_HAS_BOOST_FILESYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM

_IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_mpi)
IMP_MPI_HAS_BOOST_PROGRAMOPTIONS = _IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS

_IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM_swigconstant(_IMP_mpi)
IMP_MPI_HAS_BOOST_RANDOM = _IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM

_IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM_swigconstant(_IMP_mpi)
IMP_MPI_HAS_BOOST_SYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM

_IMP_mpi.IMP_MPI_HAS_NUMPY_swigconstant(_IMP_mpi)
IMP_MPI_HAS_NUMPY = _IMP_mpi.IMP_MPI_HAS_NUMPY

_IMP_mpi.IMPMPI_SHOW_WARNINGS_swigconstant(_IMP_mpi)
IMPMPI_SHOW_WARNINGS = _IMP_mpi.IMPMPI_SHOW_WARNINGS

_object_types.append("ReplicaExchange")


def _object_cast_to_ReplicaExchange(o):
    """_object_cast_to_ReplicaExchange(Object o) -> ReplicaExchange"""
    return _IMP_mpi._object_cast_to_ReplicaExchange(o)
class ReplicaExchange(IMP.Object):
    """Proxy of C++ IMP::mpi::ReplicaExchange class"""
    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::mpi::ReplicaExchange self) -> ReplicaExchange"""
        this = _IMP_mpi.new_ReplicaExchange()
        try:
            self.this.append(this)
        except:
            self.this = this

    def set_my_parameter(self, key, values):
        """set_my_parameter(ReplicaExchange self, std::string key, IMP::Floats values)"""
        return _IMP_mpi.ReplicaExchange_set_my_parameter(self, key, values)


    def get_my_parameter(self, key):
        """get_my_parameter(ReplicaExchange self, std::string key) -> IMP::Floats"""
        return _IMP_mpi.ReplicaExchange_get_my_parameter(self, key)


    def get_friend_index(self, istep):
        """get_friend_index(ReplicaExchange self, int istep) -> int"""
        return _IMP_mpi.ReplicaExchange_get_friend_index(self, istep)


    def get_exchange_array(self):
        """get_exchange_array(ReplicaExchange self) -> IMP::Ints"""
        return _IMP_mpi.ReplicaExchange_get_exchange_array(self)


    def get_friend_parameter(self, key, findex):
        """get_friend_parameter(ReplicaExchange self, std::string key, int findex) -> IMP::Floats"""
        return _IMP_mpi.ReplicaExchange_get_friend_parameter(self, key, findex)


    def do_exchange(self, myscore0, myscore1, findex):
        """do_exchange(ReplicaExchange self, double myscore0, double myscore1, int findex) -> bool"""
        return _IMP_mpi.ReplicaExchange_do_exchange(self, myscore0, myscore1, findex)


    def create_temperatures(self, tmin, tmax, nrep):
        """create_temperatures(ReplicaExchange self, double tmin, double tmax, int nrep) -> IMP::Floats"""
        return _IMP_mpi.ReplicaExchange_create_temperatures(self, tmin, tmax, nrep)


    def get_my_index(self):
        """get_my_index(ReplicaExchange self) -> int"""
        return _IMP_mpi.ReplicaExchange_get_my_index(self)


    def get_number_of_replicas(self):
        """get_number_of_replicas(ReplicaExchange self) -> int"""
        return _IMP_mpi.ReplicaExchange_get_number_of_replicas(self)


    def get_version_info(self):
        """get_version_info(ReplicaExchange self) -> VersionInfo"""
        return _IMP_mpi.ReplicaExchange_get_version_info(self)


    def __str__(self):
        """__str__(ReplicaExchange self) -> std::string"""
        return _IMP_mpi.ReplicaExchange___str__(self)


    def __repr__(self):
        """__repr__(ReplicaExchange self) -> std::string"""
        return _IMP_mpi.ReplicaExchange___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_ReplicaExchange(o)

ReplicaExchange_swigregister = _IMP_mpi.ReplicaExchange_swigregister
ReplicaExchange_swigregister(ReplicaExchange)


def get_module_version():
    """get_module_version() -> std::string const"""
    return _IMP_mpi.get_module_version()

def get_example_path(fname):
    """get_example_path(std::string fname) -> std::string"""
    return _IMP_mpi.get_example_path(fname)

def get_data_path(fname):
    """get_data_path(std::string fname) -> std::string"""
    return _IMP_mpi.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()