11 from __future__
import print_function, division, absolute_import
17 from sys
import version_info
18 if version_info >= (2, 6, 0):
19 def swig_import_helper():
20 from os.path
import dirname
24 fp, pathname, description = imp.find_module(
'_IMP_gsl', [dirname(__file__)])
30 _mod = imp.load_module(
'_IMP_gsl', fp, pathname, description)
34 _IMP_gsl = swig_import_helper()
35 del swig_import_helper
40 _swig_property = property
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46 if (name ==
"thisown"):
47 return self.this.own(value)
49 if type(value).__name__ ==
'SwigPyObject':
50 self.__dict__[name] = value
52 method = class_type.__swig_setmethods__.get(name,
None)
54 return method(self, value)
56 object.__setattr__(self, name, value)
58 raise AttributeError(
"You cannot add attributes to %s" % self)
61 def _swig_setattr(self, class_type, name, value):
62 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66 if (name ==
"thisown"):
67 return self.this.own()
68 method = class_type.__swig_getmethods__.get(name,
None)
72 return object.__getattr__(self, name)
74 raise AttributeError(name)
76 def _swig_getattr(self, class_type, name):
77 return _swig_getattr_nondynamic(self, class_type, name, 0)
82 strthis =
"proxy of " + self.this.__repr__()
85 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
90 except AttributeError:
97 def _swig_setattr_nondynamic_method(set):
98 def set_attr(self, name, value):
99 if (name ==
"thisown"):
100 return self.this.own(value)
101 if hasattr(self, name)
or (name ==
"this"):
102 set(self, name, value)
104 raise AttributeError(
"You cannot add attributes to %s" % self)
110 weakref_proxy = weakref.proxy
112 weakref_proxy =
lambda x: x
115 class IMP_GSL_SwigPyIterator(object):
116 """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
117 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
119 def __init__(self, *args, **kwargs):
120 raise AttributeError(
"No constructor defined - class is abstract")
121 __repr__ = _swig_repr
122 __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
123 __del__ =
lambda self:
None
126 """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
127 return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
132 incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
133 incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
135 return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
140 decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
141 decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
143 return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
146 def distance(self, x):
147 """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
148 return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
152 """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
153 return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
157 """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
158 return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
162 """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
163 return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
167 """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
168 return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
172 """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
173 return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
176 def advance(self, n):
177 """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
178 return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
182 """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
183 return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
187 """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
188 return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
191 def __iadd__(self, n):
192 """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
193 return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
196 def __isub__(self, n):
197 """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
198 return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
201 def __add__(self, n):
202 """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
203 return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
206 def __sub__(self, *args):
208 __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
209 __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
211 return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
215 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
216 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
225 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
226 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
228 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
229 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
231 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
232 IMP_SILENT = _IMP_gsl.IMP_SILENT
234 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
235 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
237 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
238 IMP_TERSE = _IMP_gsl.IMP_TERSE
240 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
241 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
243 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
244 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
246 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
247 IMP_NONE = _IMP_gsl.IMP_NONE
249 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
250 IMP_USAGE = _IMP_gsl.IMP_USAGE
252 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
253 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
255 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
258 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
261 _IMP_gsl.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_gsl)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_gsl.IMP_COMPILER_HAS_RANDOM_SHUFFLE
264 _IMP_gsl.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_gsl)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_gsl.IMP_COMPILER_HAS_THREE_WAY
267 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
270 _IMP_gsl.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_gsl)
271 IMP_KERNEL_HAS_NUMPY = _IMP_gsl.IMP_KERNEL_HAS_NUMPY
273 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
276 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
279 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
282 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
286 class _DirectorObjects(object):
287 """@internal Simple class to keep references to director objects
288 to prevent premature deletion."""
291 def register(self, obj):
292 """Take a reference to a director object; will only work for
293 refcounted C++ classes"""
294 if hasattr(obj,
'get_ref_count'):
295 self._objects.append(obj)
297 """Only drop our reference and allow cleanup by Python if no other
298 Python references exist (we hold 3 references: one in self._objects,
299 one in x, and one in the argument list for getrefcount) *and* no
300 other C++ references exist (the Python object always holds one)"""
301 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
302 or x.get_ref_count() > 1]
306 def get_object_count(self):
307 """Get number of director objects (useful for testing only)"""
308 return len(self._objects)
309 _director_objects = _DirectorObjects()
311 class _ostream(object):
312 """Proxy of C++ std::ostream class"""
313 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
315 def __init__(self, *args, **kwargs):
316 raise AttributeError(
"No constructor defined")
317 __repr__ = _swig_repr
319 def write(self, osa_buf):
320 """write(_ostream self, char const * osa_buf)"""
321 return _IMP_gsl._ostream_write(self, osa_buf)
323 _ostream_swigregister = _IMP_gsl._ostream_swigregister
324 _ostream_swigregister(_ostream)
327 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
328 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
330 _IMP_gsl.IMP_C_OPEN_BINARY_swigconstant(_IMP_gsl)
331 IMP_C_OPEN_BINARY = _IMP_gsl.IMP_C_OPEN_BINARY
334 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
337 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
340 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
343 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
346 _IMP_gsl.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_gsl)
347 IMP_CGAL_HAS_NUMPY = _IMP_gsl.IMP_CGAL_HAS_NUMPY
349 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
350 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
353 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
354 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
356 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
357 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
359 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
360 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
362 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
363 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
365 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
366 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
368 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
369 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
371 _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_gsl)
372 IMP_ALGEBRA_HAS_NUMPY = _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY
374 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
375 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
377 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
378 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
381 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
382 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
384 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
385 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
387 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
388 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
390 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
391 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
393 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
394 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
396 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
397 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
399 _IMP_gsl.IMP_GSL_HAS_NUMPY_swigconstant(_IMP_gsl)
400 IMP_GSL_HAS_NUMPY = _IMP_gsl.IMP_GSL_HAS_NUMPY
402 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
403 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
405 _object_types.append(
"GSLOptimizer")
408 def _object_cast_to_GSLOptimizer(o):
409 """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
410 return _IMP_gsl._object_cast_to_GSLOptimizer(o)
412 _object_types.append(
"ConjugateGradients")
415 def _object_cast_to_ConjugateGradients(o):
416 """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
417 return _IMP_gsl._object_cast_to_ConjugateGradients(o)
419 _object_types.append(
"QuasiNewton")
422 def _object_cast_to_QuasiNewton(o):
423 """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
424 return _IMP_gsl._object_cast_to_QuasiNewton(o)
426 _object_types.append(
"Simplex")
429 def _object_cast_to_Simplex(o):
430 """_object_cast_to_Simplex(Object o) -> Simplex"""
431 return _IMP_gsl._object_cast_to_Simplex(o)
433 """Proxy of C++ IMP::gsl::GSLOptimizer class"""
434 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
436 def __init__(self, m):
437 """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
438 if self.__class__ == GSLOptimizer:
442 this = _IMP_gsl.new_GSLOptimizer(_self, m)
444 self.this.append(this)
448 if self.__class__ != GSLOptimizer:
449 _director_objects.register(self)
453 __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
454 __del__ =
lambda self:
None
456 def set_stop_score(self, d):
457 """set_stop_score(GSLOptimizer self, double d)"""
458 return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
462 """__str__(GSLOptimizer self) -> std::string"""
463 return _IMP_gsl.GSLOptimizer___str__(self)
467 """__repr__(GSLOptimizer self) -> std::string"""
468 return _IMP_gsl.GSLOptimizer___repr__(self)
473 return _object_cast_to_GSLOptimizer(o)
476 def get_type_name(self):
477 return self.__class__.__name__
478 def do_show(self, out):
481 if"IMP::gsl" ==
"IMP":
482 return VersionInfo(self.__module__,
489 return _object_cast_to_GSLOptimizer(o)
491 def __disown__(self):
493 _IMP_gsl.disown_GSLOptimizer(self)
494 return weakref_proxy(self)
497 """do_destroy(GSLOptimizer self)"""
498 return _IMP_gsl.GSLOptimizer_do_destroy(self)
501 def handle_set_has_required_score_states(self, arg0):
502 """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
503 return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
507 """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
508 return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
512 """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
513 return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
516 def do_get_interactions(self):
517 """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
518 return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
521 def do_optimize(self, ns):
522 """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
523 return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
525 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
526 GSLOptimizer_swigregister(GSLOptimizer)
528 class ConjugateGradients(GSLOptimizer):
529 """Proxy of C++ IMP::gsl::ConjugateGradients class"""
530 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
532 def __init__(self, m):
533 """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
534 this = _IMP_gsl.new_ConjugateGradients(m)
536 self.this.append(this)
540 def set_threshold(self, mg):
541 """set_threshold(ConjugateGradients self, double mg)"""
542 return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
545 def do_optimize(self, max_steps):
546 """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
547 return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
551 """get_version_info(ConjugateGradients self) -> VersionInfo"""
552 return _IMP_gsl.ConjugateGradients_get_version_info(self)
556 """__str__(ConjugateGradients self) -> std::string"""
557 return _IMP_gsl.ConjugateGradients___str__(self)
561 """__repr__(ConjugateGradients self) -> std::string"""
562 return _IMP_gsl.ConjugateGradients___repr__(self)
567 return _object_cast_to_ConjugateGradients(o)
569 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
570 ConjugateGradients_swigregister(ConjugateGradients)
572 class QuasiNewton(GSLOptimizer):
573 """Proxy of C++ IMP::gsl::QuasiNewton class"""
574 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
576 def __init__(self, m):
577 """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
578 this = _IMP_gsl.new_QuasiNewton(m)
580 self.this.append(this)
584 def set_initial_step(self, length):
585 """set_initial_step(QuasiNewton self, double length)"""
586 return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
589 def set_line_step(self, d):
590 """set_line_step(QuasiNewton self, double d)"""
591 return _IMP_gsl.QuasiNewton_set_line_step(self, d)
594 def set_minimum_gradient(self, d):
595 """set_minimum_gradient(QuasiNewton self, double d)"""
596 return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
599 def do_optimize(self, max_steps):
600 """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
601 return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
605 """get_version_info(QuasiNewton self) -> VersionInfo"""
606 return _IMP_gsl.QuasiNewton_get_version_info(self)
610 """__str__(QuasiNewton self) -> std::string"""
611 return _IMP_gsl.QuasiNewton___str__(self)
615 """__repr__(QuasiNewton self) -> std::string"""
616 return _IMP_gsl.QuasiNewton___repr__(self)
621 return _object_cast_to_QuasiNewton(o)
623 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
624 QuasiNewton_swigregister(QuasiNewton)
626 class Simplex(GSLOptimizer):
627 """Proxy of C++ IMP::gsl::Simplex class"""
628 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
630 def __init__(self, m):
631 """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
632 this = _IMP_gsl.new_Simplex(m)
634 self.this.append(this)
638 def set_initial_length(self, length):
639 """set_initial_length(Simplex self, double length)"""
640 return _IMP_gsl.Simplex_set_initial_length(self, length)
643 def set_minimum_size(self, d):
644 """set_minimum_size(Simplex self, double d)"""
645 return _IMP_gsl.Simplex_set_minimum_size(self, d)
648 def do_optimize(self, max_steps):
649 """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
650 return _IMP_gsl.Simplex_do_optimize(self, max_steps)
654 """get_version_info(Simplex self) -> VersionInfo"""
655 return _IMP_gsl.Simplex_get_version_info(self)
659 """__str__(Simplex self) -> std::string"""
660 return _IMP_gsl.Simplex___str__(self)
664 """__repr__(Simplex self) -> std::string"""
665 return _IMP_gsl.Simplex___repr__(self)
670 return _object_cast_to_Simplex(o)
672 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
673 Simplex_swigregister(Simplex)
677 """get_module_version() -> std::string const"""
678 return _IMP_gsl.get_module_version()
681 """get_example_path(std::string fname) -> std::string"""
682 return _IMP_gsl.get_example_path(fname)
685 """get_data_path(std::string fname) -> std::string"""
686 return _IMP_gsl.get_data_path(fname)
688 from .
import _version_check
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
virtual void do_destroy()
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Version and module information for Objects.
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.