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IMP Reference Guide  2.17.0
The Integrative Modeling Platform
display/display_log.py

A simple example of how to use one of the IMP.display.LogOptimizerStates.

1 ## \example display/display_log.py
2 # A simple example of how to use one of the IMP.display.LogOptimizerStates.
3 
4 import IMP.display
5 import IMP.core
6 import IMP.container
7 import sys
8 
10  sys.argv,
11  "Example of how to use one of the IMP.display.LogOptimizerStates")
12 
13 m = IMP.Model()
14 ps = IMP.core.create_xyzr_particles(m, 20, 5)
16 
17 # Write outputs into a single file.
19  m, IMP.display.PymolWriter("log_file.pym"))
20 # the logging occurs ever two frames
21 log.set_period(2)
23 g.set_name("my particles")
24 g.set_color(IMP.display.Color(1, 0, 0))
25 log.add_geometry(g)
26 
28 r.set_log_level(IMP.VERBOSE)
29 
31 o.set_scoring_function([r])
32 mv = IMP.core.BallMover(m, ps, 10)
33 o.add_mover(mv)
34 o.add_optimizer_state(log)
35 
36 o.optimize(1000)