| Argument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| clear_caches() | IMP::Object | virtual |
| create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | |
| DistancePairScore(const DistanceScore &t0, std::string name="FunctorDistancePairScore %1%") (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
| DistanceScore typedef (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
| do_create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | protectedvirtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs(Model *m, const ParticleIndexes &pis) const override | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate_if_good_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::PairScore | virtual |
| evaluate_if_good_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const override | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate_index(Model *m, const ParticleIndexPair &pip, DerivativeAccumulator *da) const override | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const overridefinal | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate_indexes_delta(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, const std::vector< unsigned > &indexes, std::vector< double > &score) const overridefinal | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate_indexes_scores(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound, std::vector< double > &score) const overridefinal | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_inputs(Model *m, const ParticleIndexes &pis) const | IMP::ParticleInputs | |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_maximum_distance() const (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_score_functor() | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
| get_type_name() const override (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| get_version_info() const override | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| IndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| Modifier typedef (defined in IMP::PairScore) | IMP::PairScore | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| PairScore(std::string name="PairScore %1%") (defined in IMP::PairScore) | IMP::PairScore | |
| PassArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| PassIndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| ProteinLigandAtomPairScore(double threshold=std::numeric_limits< double >::max()) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| ProteinLigandAtomPairScore(double threshold, TextInput data_file) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_log_level(LogLevel l) | IMP::Object | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_was_used(bool tf) const | IMP::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
| StatisticalPairScore(IntKey k, double threshold, TextInput data_file) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |
| StatisticalPairScore(IntKey k, double threshold, TextInput data_file, unsigned int shift) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |
| ~DistancePairScore() (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | protectedvirtual |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
| ~ParticleInputs() (defined in IMP::ParticleInputs) | IMP::ParticleInputs | protectedvirtual |
