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IMP Reference Guide  2.17.0
The Integrative Modeling Platform
version 2.17.0
bayesianem/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_bayesianem', [dirname(__file__)])
25  except ImportError:
26  import _IMP_bayesianem
27  return _IMP_bayesianem
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_bayesianem', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_bayesianem = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_bayesianem
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_BAYESIANEM_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_BAYESIANEM_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_bayesianem.delete_IMP_BAYESIANEM_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
127  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
133  incr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
134  """
135  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
141  decr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
142  """
143  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
153  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator"""
158  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
163  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
168  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
173  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
178  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
183  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
188  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
193  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
198  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
203  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator
209  __sub__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_BAYESIANEM_SwigPyIterator_swigregister = _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_swigregister
216 IMP_BAYESIANEM_SwigPyIterator_swigregister(IMP_BAYESIANEM_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_bayesianem.IMP_DEBUG_swigconstant(_IMP_bayesianem)
226 IMP_DEBUG = _IMP_bayesianem.IMP_DEBUG
227 
228 _IMP_bayesianem.IMP_RELEASE_swigconstant(_IMP_bayesianem)
229 IMP_RELEASE = _IMP_bayesianem.IMP_RELEASE
230 
231 _IMP_bayesianem.IMP_SILENT_swigconstant(_IMP_bayesianem)
232 IMP_SILENT = _IMP_bayesianem.IMP_SILENT
233 
234 _IMP_bayesianem.IMP_PROGRESS_swigconstant(_IMP_bayesianem)
235 IMP_PROGRESS = _IMP_bayesianem.IMP_PROGRESS
236 
237 _IMP_bayesianem.IMP_TERSE_swigconstant(_IMP_bayesianem)
238 IMP_TERSE = _IMP_bayesianem.IMP_TERSE
239 
240 _IMP_bayesianem.IMP_VERBOSE_swigconstant(_IMP_bayesianem)
241 IMP_VERBOSE = _IMP_bayesianem.IMP_VERBOSE
242 
243 _IMP_bayesianem.IMP_MEMORY_swigconstant(_IMP_bayesianem)
244 IMP_MEMORY = _IMP_bayesianem.IMP_MEMORY
245 
246 _IMP_bayesianem.IMP_NONE_swigconstant(_IMP_bayesianem)
247 IMP_NONE = _IMP_bayesianem.IMP_NONE
248 
249 _IMP_bayesianem.IMP_USAGE_swigconstant(_IMP_bayesianem)
250 IMP_USAGE = _IMP_bayesianem.IMP_USAGE
251 
252 _IMP_bayesianem.IMP_INTERNAL_swigconstant(_IMP_bayesianem)
253 IMP_INTERNAL = _IMP_bayesianem.IMP_INTERNAL
254 
255 _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_bayesianem)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_bayesianem)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_bayesianem.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_bayesianem)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_bayesianem.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_bayesianem.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_bayesianem)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_bayesianem.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
271 IMP_KERNEL_HAS_NUMPY = _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_bayesianem)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_bayesianem)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_bayesianem)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_bayesianem._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_bayesianem._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_bayesianem.IMP_HAS_NOEXCEPT_swigconstant(_IMP_bayesianem)
328 IMP_HAS_NOEXCEPT = _IMP_bayesianem.IMP_HAS_NOEXCEPT
329 
330 _IMP_bayesianem.IMP_C_OPEN_BINARY_swigconstant(_IMP_bayesianem)
331 IMP_C_OPEN_BINARY = _IMP_bayesianem.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_bayesianem.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
347 IMP_CGAL_HAS_NUMPY = _IMP_bayesianem.IMP_CGAL_HAS_NUMPY
348 
349 _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
350 IMPCGAL_SHOW_WARNINGS = _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS
351 import IMP.cgal
352 
353 _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
354 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL
355 
356 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
357 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
358 
359 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
360 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
361 
362 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
363 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM
364 
365 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
366 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM
367 
368 _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_bayesianem)
369 IMP_ALGEBRA_HAS_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL
370 
371 _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_bayesianem)
372 IMP_ALGEBRA_HAS_NUMPY = _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY
373 
374 _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_bayesianem)
375 IMP_ALGEBRA_HAS_ANN = _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN
376 
377 _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
378 IMPALGEBRA_SHOW_WARNINGS = _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS
379 import IMP.algebra
380 
381 _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
382 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL
383 
384 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
385 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
386 
387 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
388 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
389 
390 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
391 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM
392 
393 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
394 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM
395 
396 _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_bayesianem)
397 IMP_DISPLAY_HAS_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL
398 
399 _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_bayesianem)
400 IMP_DISPLAY_HAS_NUMPY = _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY
401 
402 _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
403 IMPDISPLAY_SHOW_WARNINGS = _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS
404 import IMP.display
405 
406 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
407 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
408 
409 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
410 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
411 
412 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
413 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
414 
415 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
416 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
417 
418 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
420 
421 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_bayesianem)
422 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL
423 
424 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_bayesianem)
425 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5
426 
427 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_bayesianem)
428 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY
429 
430 _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
431 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS
432 import IMP.score_functor
433 
434 _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
435 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL
436 
437 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
438 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
439 
440 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
441 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
442 
443 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
444 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM
445 
446 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
447 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM
448 
449 _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_bayesianem)
450 IMP_STATISTICS_HAS_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL
451 
452 _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
453 IMP_STATISTICS_HAS_NUMPY = _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY
454 
455 _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
456 IMPSTATISTICS_SHOW_WARNINGS = _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS
457 import IMP.statistics
458 
459 _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
460 IMP_CORE_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL
461 
462 _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
463 IMP_CORE_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL
464 
465 _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
466 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM
467 
468 _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
469 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
470 
471 _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
472 IMP_CORE_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM
473 
474 _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
475 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM
476 
477 _IMP_bayesianem.IMP_CORE_HAS_CGAL_swigconstant(_IMP_bayesianem)
478 IMP_CORE_HAS_CGAL = _IMP_bayesianem.IMP_CORE_HAS_CGAL
479 
480 _IMP_bayesianem.IMP_CORE_HAS_HDF5_swigconstant(_IMP_bayesianem)
481 IMP_CORE_HAS_HDF5 = _IMP_bayesianem.IMP_CORE_HAS_HDF5
482 
483 _IMP_bayesianem.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_bayesianem)
484 IMP_CORE_HAS_NUMPY = _IMP_bayesianem.IMP_CORE_HAS_NUMPY
485 
486 _IMP_bayesianem.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
487 IMPCORE_SHOW_WARNINGS = _IMP_bayesianem.IMPCORE_SHOW_WARNINGS
488 import IMP.core
489 
490 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_bayesianem)
491 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA
492 
493 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
494 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL
495 
496 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
497 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY
498 
499 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
500 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL
501 
502 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
503 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
504 
505 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
506 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
507 
508 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
509 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
510 
511 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
512 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM
513 
514 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
515 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM
516 
517 _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_bayesianem)
518 IMP_CONTAINER_HAS_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL
519 
520 _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_bayesianem)
521 IMP_CONTAINER_HAS_HDF5 = _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5
522 
523 _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_bayesianem)
524 IMP_CONTAINER_HAS_NUMPY = _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY
525 
526 _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
527 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM
528 
529 _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_bayesianem)
530 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
531 
532 _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_bayesianem)
533 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP
534 
535 _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
536 IMPCONTAINER_SHOW_WARNINGS = _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS
537 import IMP.container
538 
539 _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
540 IMP_ATOM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL
541 
542 _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
543 IMP_ATOM_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL
544 
545 _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
546 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
547 
548 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
549 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
550 
551 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
552 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM
553 
554 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
555 IMP_ATOM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX
556 
557 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
558 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM
559 
560 _IMP_bayesianem.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_bayesianem)
561 IMP_ATOM_HAS_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_CGAL
562 
563 _IMP_bayesianem.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_bayesianem)
564 IMP_ATOM_HAS_HDF5 = _IMP_bayesianem.IMP_ATOM_HAS_HDF5
565 
566 _IMP_bayesianem.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
567 IMP_ATOM_HAS_NUMPY = _IMP_bayesianem.IMP_ATOM_HAS_NUMPY
568 
569 _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
570 IMP_ATOM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM
571 
572 _IMP_bayesianem.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
573 IMPATOM_SHOW_WARNINGS = _IMP_bayesianem.IMPATOM_SHOW_WARNINGS
574 
575 _IMP_bayesianem.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_bayesianem)
576 IMP_ATOM_TYPE_INDEX = _IMP_bayesianem.IMP_ATOM_TYPE_INDEX
577 
578 _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_bayesianem)
579 IMP_RESIDUE_TYPE_INDEX = _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX
580 
581 _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_bayesianem)
582 IMP_HIERARCHY_TYPE_INDEX = _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX
583 
584 _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_bayesianem)
585 IMP_CHAIN_TYPE_INDEX = _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX
586 import IMP.atom
587 
588 _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
589 IMP_EM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL
590 
591 _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
592 IMP_EM_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER
593 
594 _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
595 IMP_EM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY
596 
597 _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
598 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR
599 
600 _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
601 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM
602 
603 _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
604 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
605 
606 _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
607 IMP_EM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM
608 
609 _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
610 IMP_EM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX
611 
612 _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
613 IMP_EM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM
614 
615 _IMP_bayesianem.IMP_EM_HAS_CGAL_swigconstant(_IMP_bayesianem)
616 IMP_EM_HAS_CGAL = _IMP_bayesianem.IMP_EM_HAS_CGAL
617 
618 _IMP_bayesianem.IMP_EM_HAS_HDF5_swigconstant(_IMP_bayesianem)
619 IMP_EM_HAS_HDF5 = _IMP_bayesianem.IMP_EM_HAS_HDF5
620 
621 _IMP_bayesianem.IMP_EM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
622 IMP_EM_HAS_NUMPY = _IMP_bayesianem.IMP_EM_HAS_NUMPY
623 
624 _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
625 IMP_EM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM
626 
627 _IMP_bayesianem.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
628 IMPEM_SHOW_WARNINGS = _IMP_bayesianem.IMPEM_SHOW_WARNINGS
629 import IMP.em
630 
631 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
632 IMP_SAXS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL
633 
634 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
635 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER
636 
637 _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
638 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY
639 
640 _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
641 IMP_SAXS_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL
642 
643 _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
644 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
645 
646 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
647 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM
648 
649 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
650 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
651 
652 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
653 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM
654 
655 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
656 IMP_SAXS_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX
657 
658 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
659 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM
660 
661 _IMP_bayesianem.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_bayesianem)
662 IMP_SAXS_HAS_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_CGAL
663 
664 _IMP_bayesianem.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_bayesianem)
665 IMP_SAXS_HAS_HDF5 = _IMP_bayesianem.IMP_SAXS_HAS_HDF5
666 
667 _IMP_bayesianem.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
668 IMP_SAXS_HAS_NUMPY = _IMP_bayesianem.IMP_SAXS_HAS_NUMPY
669 
670 _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
671 IMP_SAXS_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM
672 
673 _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
674 IMPSAXS_SHOW_WARNINGS = _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS
675 import IMP.saxs
676 
677 _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
678 IMP_ISD_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL
679 
680 _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
681 IMP_ISD_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY
682 
683 _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
684 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
685 
686 _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
687 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM
688 
689 _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
690 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
691 
692 _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
693 IMP_ISD_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM
694 
695 _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
696 IMP_ISD_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX
697 
698 _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
699 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM
700 
701 _IMP_bayesianem.IMP_ISD_HAS_CGAL_swigconstant(_IMP_bayesianem)
702 IMP_ISD_HAS_CGAL = _IMP_bayesianem.IMP_ISD_HAS_CGAL
703 
704 _IMP_bayesianem.IMP_ISD_HAS_HDF5_swigconstant(_IMP_bayesianem)
705 IMP_ISD_HAS_HDF5 = _IMP_bayesianem.IMP_ISD_HAS_HDF5
706 
707 _IMP_bayesianem.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_bayesianem)
708 IMP_ISD_HAS_NUMPY = _IMP_bayesianem.IMP_ISD_HAS_NUMPY
709 
710 _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
711 IMP_ISD_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM
712 
713 _IMP_bayesianem.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
714 IMPISD_SHOW_WARNINGS = _IMP_bayesianem.IMPISD_SHOW_WARNINGS
715 import IMP.isd
716 
717 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
718 IMP_BAYESIANEM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL
719 
720 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
721 IMP_BAYESIANEM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY
722 
723 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
724 IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR
725 
726 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
727 IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM
728 
729 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
730 IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS
731 
732 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
733 IMP_BAYESIANEM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM
734 
735 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
736 IMP_BAYESIANEM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX
737 
738 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
739 IMP_BAYESIANEM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM
740 
741 _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL_swigconstant(_IMP_bayesianem)
742 IMP_BAYESIANEM_HAS_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL
743 
744 _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5_swigconstant(_IMP_bayesianem)
745 IMP_BAYESIANEM_HAS_HDF5 = _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5
746 
747 _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
748 IMP_BAYESIANEM_HAS_NUMPY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY
749 
750 _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
751 IMP_BAYESIANEM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM
752 
753 _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
754 IMPBAYESIANEM_SHOW_WARNINGS = _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS
755 
756 _object_types.append("GaussianEMRestraint")
757 
758 class GaussianEMRestraint(IMP.Restraint):
759  """Proxy of C++ IMP::bayesianem::GaussianEMRestraint class"""
760  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
761 
762  def __init__(self, *args):
763  """
764  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False, std::string name) -> GaussianEMRestraint
765  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False) -> GaussianEMRestraint
766  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True) -> GaussianEMRestraint
767  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope) -> GaussianEMRestraint
768  """
769  this = _IMP_bayesianem.new_GaussianEMRestraint(*args)
770  try:
771  self.this.append(this)
772  except:
773  self.this = this
774 
775  def get_probability(self):
776  """get_probability(GaussianEMRestraint self) -> double"""
777  return _IMP_bayesianem.GaussianEMRestraint_get_probability(self)
778 
779 
780  def set_density_filename(self, density_fn):
781  """set_density_filename(GaussianEMRestraint self, std::string density_fn)"""
782  return _IMP_bayesianem.GaussianEMRestraint_set_density_filename(self, density_fn)
783 
784 
785  def compute_initial_scores(self):
786  """compute_initial_scores(GaussianEMRestraint self)"""
787  return _IMP_bayesianem.GaussianEMRestraint_compute_initial_scores(self)
788 
789 
790  def get_indexes(self):
791  """get_indexes(GaussianEMRestraint self) -> IMP::ParticleIndexes const"""
792  return _IMP_bayesianem.GaussianEMRestraint_get_indexes(self)
793 
794 
795  def get_log2(self):
796  """get_log2(GaussianEMRestraint self) -> IMP::Floats const"""
797  return _IMP_bayesianem.GaussianEMRestraint_get_log2(self)
798 
799 
800  def debug(self):
801  """debug(GaussianEMRestraint self)"""
802  return _IMP_bayesianem.GaussianEMRestraint_debug(self)
803 
804 
805  def set_slope(self, s):
806  """set_slope(GaussianEMRestraint self, IMP::Float s)"""
807  return _IMP_bayesianem.GaussianEMRestraint_set_slope(self, s)
808 
809 
810  def get_slope(self):
811  """get_slope(GaussianEMRestraint self) -> IMP::Float"""
812  return _IMP_bayesianem.GaussianEMRestraint_get_slope(self)
813 
814 
815  def do_get_inputs(self):
816  """do_get_inputs(GaussianEMRestraint self) -> IMP::ModelObjectsTemp"""
817  return _IMP_bayesianem.GaussianEMRestraint_do_get_inputs(self)
818 
819 
820  def show(self, out):
821  """show(GaussianEMRestraint self, _ostream out)"""
822  return _IMP_bayesianem.GaussianEMRestraint_show(self, out)
823 
824 
825  def get_version_info(self):
826  """get_version_info(GaussianEMRestraint self) -> VersionInfo"""
827  return _IMP_bayesianem.GaussianEMRestraint_get_version_info(self)
828 
829 
830  def __str__(self):
831  """__str__(GaussianEMRestraint self) -> std::string"""
832  return _IMP_bayesianem.GaussianEMRestraint___str__(self)
833 
834 
835  def __repr__(self):
836  """__repr__(GaussianEMRestraint self) -> std::string"""
837  return _IMP_bayesianem.GaussianEMRestraint___repr__(self)
838 
839 
840  @staticmethod
841  def get_from(o):
842  return _object_cast_to_GaussianEMRestraint(o)
843 
844 GaussianEMRestraint_swigregister = _IMP_bayesianem.GaussianEMRestraint_swigregister
845 GaussianEMRestraint_swigregister(GaussianEMRestraint)
846 
847 
848 def get_rmsd_excluding_higher_than(m1, m2, t):
849  """get_rmsd_excluding_higher_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
850  return _IMP_bayesianem.get_rmsd_excluding_higher_than(m1, m2, t)
851 
852 def get_percentage_closer_than(m1, m2, t):
853  """get_percentage_closer_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
854  return _IMP_bayesianem.get_percentage_closer_than(m1, m2, t)
855 
856 def get_transformation_aligning_first_to_second(s1, s2):
857  """get_transformation_aligning_first_to_second(Selection s1, Selection s2) -> Transformation3D"""
858  return _IMP_bayesianem.get_transformation_aligning_first_to_second(s1, s2)
859 
860 def get_rmsd_of_best_population(*args):
861  """
862  get_rmsd_of_best_population(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const percentage) -> double
863  get_rmsd_of_best_population(Selection s1, Selection s2, double const percentage) -> double
864  get_rmsd_of_best_population(IMP::algebra::Vector3Ds const & m1, IMP::algebra::Vector3Ds const & m2, double const percentage) -> double
865  """
866  return _IMP_bayesianem.get_rmsd_of_best_population(*args)
867 
868 def gem_score_cc(model_ps, density_ps):
869  """gem_score_cc(IMP::Particles model_ps, IMP::Particles density_ps) -> double"""
870  return _IMP_bayesianem.gem_score_cc(model_ps, density_ps)
871 
872 def get_grid(arg1):
873  """get_grid(DensityMap arg1) -> DenseDoubleGrid3D"""
874  return _IMP_bayesianem.get_grid(arg1)
875 
876 def get_masked_map(gmm, weights, densitymap, threshold):
877  """get_masked_map(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap densitymap, double threshold) -> DensityMap"""
878  return _IMP_bayesianem.get_masked_map(gmm, weights, densitymap, threshold)
879 
880 def get_sub_map(dm, sub_gmm, gmm):
881  """get_sub_map(DensityMap dm, DensityMap sub_gmm, DensityMap gmm) -> DensityMap"""
882  return _IMP_bayesianem.get_sub_map(dm, sub_gmm, gmm)
883 
884 def get_overlap_fast(gmm, weights, dm, factor=2.5):
885  """
886  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> double
887  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> double
888  """
889  return _IMP_bayesianem.get_overlap_fast(gmm, weights, dm, factor)
890 
891 def get_overlap_binned(gmm, weights, dm, factor=2.5, Nbin=100):
892  """
893  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5, int Nbin=100) -> IMP::algebra::Vector3Ds
894  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> IMP::algebra::Vector3Ds
895  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> IMP::algebra::Vector3Ds
896  """
897  return _IMP_bayesianem.get_overlap_binned(gmm, weights, dm, factor, Nbin)
898 
899 def get_rotation_matrix(x, y):
900  """get_rotation_matrix(Vector3D x, Vector3D y) -> Rotation3D"""
901  return _IMP_bayesianem.get_rotation_matrix(x, y)
902 
903 def sgn(v):
904  """sgn(double v) -> float"""
905  return _IMP_bayesianem.sgn(v)
906 
907 def NormalizePCA(pca, ps):
908  """NormalizePCA(PrincipalComponentAnalysis3D pca, IMP::Particles const & ps) -> PrincipalComponentAnalysis3D"""
909  return _IMP_bayesianem.NormalizePCA(pca, ps)
910 
911 def PCAalign(pca1, pca2):
912  """PCAalign(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2) -> IMP::algebra::Transformation3Ds"""
913  return _IMP_bayesianem.PCAalign(pca1, pca2)
914 
915 def get_module_version():
916  """get_module_version() -> std::string const"""
917  return _IMP_bayesianem.get_module_version()
918 
919 def get_example_path(fname):
920  """get_example_path(std::string fname) -> std::string"""
921  return _IMP_bayesianem.get_example_path(fname)
922 
923 def get_data_path(fname):
924  """get_data_path(std::string fname) -> std::string"""
925  return _IMP_bayesianem.get_data_path(fname)
926 
927 from . import _version_check
928 _version_check.check_version(get_module_version())
929 __version__ = get_module_version()
930 
931 
932 
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::algebra::get_transformation_aligning_first_to_second
IMP::algebra::Transformation3D get_transformation_aligning_first_to_second(const Vector3DsOrXYZs0 &source, const Vector3DsOrXYZs1 &target)
Compute the rigid transform bringing the first point set to the second.
Definition: geometric_alignment.h:45
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:410
IMP::bayesianem::get_grid
DensityGrid get_grid(IMP::em::DensityMap *in)
Return a dense grid containing the voxels of the passed density map.
Definition: bayesianem/utilities.h:174
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::get_indexes
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Get the indexes from a list of particles.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53