10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
16 if version_info >= (2, 6, 0):
17 def swig_import_helper():
18 from os.path
import dirname
22 fp, pathname, description = imp.find_module(
'_IMP_score_functor', [dirname(__file__)])
24 import _IMP_score_functor
25 return _IMP_score_functor
28 _mod = imp.load_module(
'_IMP_score_functor', fp, pathname, description)
32 _IMP_score_functor = swig_import_helper()
33 del swig_import_helper
35 import _IMP_score_functor
38 _swig_property = property
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44 if (name ==
"thisown"):
45 return self.this.own(value)
47 if type(value).__name__ ==
'SwigPyObject':
48 self.__dict__[name] = value
50 method = class_type.__swig_setmethods__.get(name,
None)
52 return method(self, value)
54 object.__setattr__(self, name, value)
56 raise AttributeError(
"You cannot add attributes to %s" % self)
59 def _swig_setattr(self, class_type, name, value):
60 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64 if (name ==
"thisown"):
65 return self.this.own()
66 method = class_type.__swig_getmethods__.get(name,
None)
70 return object.__getattr__(self, name)
72 raise AttributeError(name)
74 def _swig_getattr(self, class_type, name):
75 return _swig_getattr_nondynamic(self, class_type, name, 0)
80 strthis =
"proxy of " + self.this.__repr__()
83 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
88 except AttributeError:
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
110 weakref_proxy =
lambda x: x
113 class IMP_SCORE_FUNCTOR_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_SCORE_FUNCTOR_SwigPyIterator class"""
115 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
117 def __init__(self, *args, **kwargs):
118 raise AttributeError(
"No constructor defined - class is abstract")
119 __repr__ = _swig_repr
120 __swig_destroy__ = _IMP_score_functor.delete_IMP_SCORE_FUNCTOR_SwigPyIterator
121 __del__ =
lambda self:
None
124 """value(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
125 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_value(self)
130 incr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
131 incr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
133 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_incr(self, n)
138 decr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
139 decr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
141 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_decr(self, n)
144 def distance(self, x):
145 """distance(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t"""
146 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_distance(self, x)
150 """equal(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
151 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_equal(self, x)
155 """copy(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
156 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_copy(self)
160 """next(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
161 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_next(self)
165 """__next__(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
166 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___next__(self)
170 """previous(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
171 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_previous(self)
174 def advance(self, n):
175 """advance(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
176 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_advance(self, n)
180 """__eq__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
181 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___eq__(self, x)
185 """__ne__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
186 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___ne__(self, x)
189 def __iadd__(self, n):
190 """__iadd__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
191 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___iadd__(self, n)
194 def __isub__(self, n):
195 """__isub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
196 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___isub__(self, n)
199 def __add__(self, n):
200 """__add__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
201 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___add__(self, n)
204 def __sub__(self, *args):
206 __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator
207 __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t
209 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___sub__(self, *args)
213 IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister = _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister
214 IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister(IMP_SCORE_FUNCTOR_SwigPyIterator)
223 _IMP_score_functor.IMP_DEBUG_swigconstant(_IMP_score_functor)
224 IMP_DEBUG = _IMP_score_functor.IMP_DEBUG
226 _IMP_score_functor.IMP_RELEASE_swigconstant(_IMP_score_functor)
227 IMP_RELEASE = _IMP_score_functor.IMP_RELEASE
229 _IMP_score_functor.IMP_SILENT_swigconstant(_IMP_score_functor)
230 IMP_SILENT = _IMP_score_functor.IMP_SILENT
232 _IMP_score_functor.IMP_PROGRESS_swigconstant(_IMP_score_functor)
233 IMP_PROGRESS = _IMP_score_functor.IMP_PROGRESS
235 _IMP_score_functor.IMP_TERSE_swigconstant(_IMP_score_functor)
236 IMP_TERSE = _IMP_score_functor.IMP_TERSE
238 _IMP_score_functor.IMP_VERBOSE_swigconstant(_IMP_score_functor)
239 IMP_VERBOSE = _IMP_score_functor.IMP_VERBOSE
241 _IMP_score_functor.IMP_MEMORY_swigconstant(_IMP_score_functor)
242 IMP_MEMORY = _IMP_score_functor.IMP_MEMORY
244 _IMP_score_functor.IMP_NONE_swigconstant(_IMP_score_functor)
245 IMP_NONE = _IMP_score_functor.IMP_NONE
247 _IMP_score_functor.IMP_USAGE_swigconstant(_IMP_score_functor)
248 IMP_USAGE = _IMP_score_functor.IMP_USAGE
250 _IMP_score_functor.IMP_INTERNAL_swigconstant(_IMP_score_functor)
251 IMP_INTERNAL = _IMP_score_functor.IMP_INTERNAL
253 _IMP_score_functor.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_score_functor)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_score_functor.IMP_KERNEL_HAS_LOG4CXX
256 _IMP_score_functor.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_score_functor)
257 IMP_COMPILER_HAS_AUTO = _IMP_score_functor.IMP_COMPILER_HAS_AUTO
259 _IMP_score_functor.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_score_functor)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_score_functor.IMP_COMPILER_HAS_DEBUG_VECTOR
262 _IMP_score_functor.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_score_functor)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_score_functor.IMP_COMPILER_HAS_UNIQUE_PTR
265 _IMP_score_functor.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_KERNEL_HAS_BOOST_RANDOM
268 _IMP_score_functor.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_score_functor)
269 IMP_KERNEL_HAS_NUMPY = _IMP_score_functor.IMP_KERNEL_HAS_NUMPY
271 _IMP_score_functor.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_score_functor)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_score_functor.IMP_KERNEL_HAS_GPERFTOOLS
274 _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_score_functor)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
277 _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_score_functor)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
280 _IMP_score_functor.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_score_functor.IMPKERNEL_SHOW_WARNINGS
284 class _DirectorObjects(object):
285 """@internal Simple class to keep references to director objects
286 to prevent premature deletion."""
289 def register(self, obj):
290 """Take a reference to a director object; will only work for
291 refcounted C++ classes"""
292 if hasattr(obj,
'get_ref_count'):
293 self._objects.append(obj)
295 """Only drop our reference and allow cleanup by Python if no other
296 Python references exist (we hold 3 references: one in self._objects,
297 one in x, and one in the argument list for getrefcount) *and* no
298 other C++ references exist (the Python object always holds one)"""
299 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
300 or x.get_ref_count() > 1]
304 def get_object_count(self):
305 """Get number of director objects (useful for testing only)"""
306 return len(self._objects)
307 _director_objects = _DirectorObjects()
309 class _ostream(object):
310 """Proxy of C++ std::ostream class"""
311 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
313 def __init__(self, *args, **kwargs):
314 raise AttributeError(
"No constructor defined")
315 __repr__ = _swig_repr
317 def write(self, osa_buf):
318 """write(_ostream self, char const * osa_buf)"""
319 return _IMP_score_functor._ostream_write(self, osa_buf)
321 _ostream_swigregister = _IMP_score_functor._ostream_swigregister
322 _ostream_swigregister(_ostream)
325 _IMP_score_functor.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_score_functor)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_score_functor.IMP_COMPILER_HAS_OVERRIDE
328 _IMP_score_functor.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_score_functor)
329 IMP_COMPILER_HAS_FINAL = _IMP_score_functor.IMP_COMPILER_HAS_FINAL
331 _IMP_score_functor.IMP_HAS_NOEXCEPT_swigconstant(_IMP_score_functor)
332 IMP_HAS_NOEXCEPT = _IMP_score_functor.IMP_HAS_NOEXCEPT
334 _IMP_score_functor.IMP_C_OPEN_BINARY_swigconstant(_IMP_score_functor)
335 IMP_C_OPEN_BINARY = _IMP_score_functor.IMP_C_OPEN_BINARY
338 _IMP_score_functor.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_FILESYSTEM
341 _IMP_score_functor.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
344 _IMP_score_functor.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_RANDOM
347 _IMP_score_functor.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_SYSTEM
350 _IMP_score_functor.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_score_functor)
351 IMP_CGAL_HAS_NUMPY = _IMP_score_functor.IMP_CGAL_HAS_NUMPY
353 _IMP_score_functor.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
354 IMPCGAL_SHOW_WARNINGS = _IMP_score_functor.IMPCGAL_SHOW_WARNINGS
357 _IMP_score_functor.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_score_functor)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_IMP_CGAL
360 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
363 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
366 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_RANDOM
369 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_SYSTEM
372 _IMP_score_functor.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_score_functor)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_CGAL
375 _IMP_score_functor.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_score_functor)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_score_functor.IMP_ALGEBRA_HAS_NUMPY
378 _IMP_score_functor.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_score_functor)
379 IMP_ALGEBRA_HAS_ANN = _IMP_score_functor.IMP_ALGEBRA_HAS_ANN
381 _IMP_score_functor.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_score_functor.IMPALGEBRA_SHOW_WARNINGS
385 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_score_functor)
386 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
388 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
389 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
391 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
392 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
394 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
395 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
397 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
398 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
400 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_score_functor)
401 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_CGAL
403 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_score_functor)
404 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_HDF5
406 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_score_functor)
407 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_NUMPY
409 _IMP_score_functor.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
410 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_score_functor.IMPSCOREFUNCTOR_SHOW_WARNINGS
412 """Proxy of C++ IMP::score_functor::Score class"""
413 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
414 __repr__ = _swig_repr
417 """__init__(IMP::score_functor::Score self) -> Score"""
418 this = _IMP_score_functor.new_Score()
420 self.this.append(this)
424 def get_inputs(self, m, pis):
425 """get_inputs(Score self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
426 return _IMP_score_functor.Score_get_inputs(self, m, pis)
429 def show(self, arg2):
430 """show(Score self, _ostream arg2)"""
431 return _IMP_score_functor.Score_show(self, arg2)
433 __swig_destroy__ = _IMP_score_functor.delete_Score
434 __del__ =
lambda self:
None
435 Score_swigregister = _IMP_score_functor.Score_swigregister
436 Score_swigregister(Score)
438 class ScoreWithCache(object):
439 """Proxy of C++ IMP::score_functor::ScoreWithCache class"""
440 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
441 __repr__ = _swig_repr
444 """__init__(IMP::score_functor::ScoreWithCache self) -> ScoreWithCache"""
445 this = _IMP_score_functor.new_ScoreWithCache()
447 self.this.append(this)
451 def get_inputs(self, m, pis):
452 """get_inputs(ScoreWithCache self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
453 return _IMP_score_functor.ScoreWithCache_get_inputs(self, m, pis)
456 def show(self, arg2):
457 """show(ScoreWithCache self, _ostream arg2)"""
458 return _IMP_score_functor.ScoreWithCache_show(self, arg2)
460 __swig_destroy__ = _IMP_score_functor.delete_ScoreWithCache
461 __del__ =
lambda self:
None
462 ScoreWithCache_swigregister = _IMP_score_functor.ScoreWithCache_swigregister
463 ScoreWithCache_swigregister(ScoreWithCache)
465 class _DopeBase(Score):
466 """Proxy of C++ IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> class"""
467 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
468 __repr__ = _swig_repr
470 def __init__(self, *args):
472 __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file) -> _DopeBase
473 __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file, unsigned int shift) -> _DopeBase
475 this = _IMP_score_functor.new__DopeBase(*args)
477 self.this.append(this)
481 def get_score(self, m, pp, distance):
482 """get_score(_DopeBase self, Model m, IMP::ParticleIndexPair const & pp, double distance) -> double"""
483 return _IMP_score_functor._DopeBase_get_score(self, m, pp, distance)
486 def get_score_and_derivative(self, m, pp, distance):
487 """get_score_and_derivative(_DopeBase self, Model m, IMP::Array< 2,IMP::ParticleIndex > const & pp, double distance) -> IMP::DerivativePair"""
488 return _IMP_score_functor._DopeBase_get_score_and_derivative(self, m, pp, distance)
491 def get_maximum_range(self, arg2, arg3):
492 """get_maximum_range(_DopeBase self, Model arg2, IMP::ParticleIndexPair const & arg3) -> double"""
493 return _IMP_score_functor._DopeBase_get_maximum_range(self, arg2, arg3)
496 def get_is_trivially_zero(self, m, p, squared_distance):
497 """get_is_trivially_zero(_DopeBase self, Model m, IMP::ParticleIndexPair const & p, double squared_distance) -> bool"""
498 return _IMP_score_functor._DopeBase_get_is_trivially_zero(self, m, p, squared_distance)
500 __swig_destroy__ = _IMP_score_functor.delete__DopeBase
501 __del__ =
lambda self:
None
502 _DopeBase_swigregister = _IMP_score_functor._DopeBase_swigregister
503 _DopeBase_swigregister(_DopeBase)
505 class _LoopStatisticalBase(Score):
506 """Proxy of C++ IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> class"""
507 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
508 __repr__ = _swig_repr
510 def __init__(self, *args):
512 __init__(IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> self, IntKey k, double threshold, TextInput data_file) -> _LoopStatisticalBase
513 __init__(IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> self, IntKey k, double threshold, TextInput data_file, unsigned int shift) -> _LoopStatisticalBase
515 this = _IMP_score_functor.new__LoopStatisticalBase(*args)
517 self.this.append(this)
521 def get_score(self, m, pp, distance):
522 """get_score(_LoopStatisticalBase self, Model m, IMP::ParticleIndexPair const & pp, double distance) -> double"""
523 return _IMP_score_functor._LoopStatisticalBase_get_score(self, m, pp, distance)
526 def get_score_and_derivative(self, m, pp, distance):
527 """get_score_and_derivative(_LoopStatisticalBase self, Model m, IMP::Array< 2,IMP::ParticleIndex > const & pp, double distance) -> IMP::DerivativePair"""
528 return _IMP_score_functor._LoopStatisticalBase_get_score_and_derivative(self, m, pp, distance)
531 def get_maximum_range(self, arg2, arg3):
532 """get_maximum_range(_LoopStatisticalBase self, Model arg2, IMP::ParticleIndexPair const & arg3) -> double"""
533 return _IMP_score_functor._LoopStatisticalBase_get_maximum_range(self, arg2, arg3)
536 def get_is_trivially_zero(self, m, p, squared_distance):
537 """get_is_trivially_zero(_LoopStatisticalBase self, Model m, IMP::ParticleIndexPair const & p, double squared_distance) -> bool"""
538 return _IMP_score_functor._LoopStatisticalBase_get_is_trivially_zero(self, m, p, squared_distance)
540 __swig_destroy__ = _IMP_score_functor.delete__LoopStatisticalBase
541 __del__ =
lambda self:
None
542 _LoopStatisticalBase_swigregister = _IMP_score_functor._LoopStatisticalBase_swigregister
543 _LoopStatisticalBase_swigregister(_LoopStatisticalBase)
545 class Dope(_DopeBase):
546 """Proxy of C++ IMP::score_functor::Dope class"""
547 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
548 __repr__ = _swig_repr
550 def __init__(self, *args):
552 __init__(IMP::score_functor::Dope self, double threshold) -> Dope
553 __init__(IMP::score_functor::Dope self) -> Dope
554 __init__(IMP::score_functor::Dope self, double threshold, TextInput data_file) -> Dope
556 this = _IMP_score_functor.new_Dope(*args)
558 self.this.append(this)
562 def get_dope_type_key():
563 """get_dope_type_key() -> IntKey"""
564 return _IMP_score_functor.Dope_get_dope_type_key()
566 get_dope_type_key = staticmethod(get_dope_type_key)
567 __swig_destroy__ = _IMP_score_functor.delete_Dope
568 __del__ =
lambda self:
None
569 Dope_swigregister = _IMP_score_functor.Dope_swigregister
570 Dope_swigregister(Dope)
572 def Dope_get_dope_type_key():
573 """Dope_get_dope_type_key() -> IntKey"""
574 return _IMP_score_functor.Dope_get_dope_type_key()
576 class LoopStatistical(_LoopStatisticalBase):
577 """Proxy of C++ IMP::score_functor::LoopStatistical class"""
578 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
579 __repr__ = _swig_repr
581 def __init__(self, *args):
583 __init__(IMP::score_functor::LoopStatistical self, double threshold) -> LoopStatistical
584 __init__(IMP::score_functor::LoopStatistical self) -> LoopStatistical
585 __init__(IMP::score_functor::LoopStatistical self, double threshold, TextInput data_file) -> LoopStatistical
587 this = _IMP_score_functor.new_LoopStatistical(*args)
589 self.this.append(this)
593 def get_loop_type_key():
594 """get_loop_type_key() -> IntKey"""
595 return _IMP_score_functor.LoopStatistical_get_loop_type_key()
597 get_loop_type_key = staticmethod(get_loop_type_key)
598 __swig_destroy__ = _IMP_score_functor.delete_LoopStatistical
599 __del__ =
lambda self:
None
600 LoopStatistical_swigregister = _IMP_score_functor.LoopStatistical_swigregister
601 LoopStatistical_swigregister(LoopStatistical)
603 def LoopStatistical_get_loop_type_key():
604 """LoopStatistical_get_loop_type_key() -> IntKey"""
605 return _IMP_score_functor.LoopStatistical_get_loop_type_key()
607 class UnaryFunctionEvaluate(Score):
608 """Proxy of C++ IMP::score_functor::UnaryFunctionEvaluate class"""
609 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
610 __repr__ = _swig_repr
612 def __init__(self, uf):
613 """__init__(IMP::score_functor::UnaryFunctionEvaluate self, UnaryFunction uf) -> UnaryFunctionEvaluate"""
614 this = _IMP_score_functor.new_UnaryFunctionEvaluate(uf)
616 self.this.append(this)
619 __swig_destroy__ = _IMP_score_functor.delete_UnaryFunctionEvaluate
620 __del__ =
lambda self:
None
621 UnaryFunctionEvaluate_swigregister = _IMP_score_functor.UnaryFunctionEvaluate_swigregister
622 UnaryFunctionEvaluate_swigregister(UnaryFunctionEvaluate)
626 """get_module_version() -> std::string const"""
627 return _IMP_score_functor.get_module_version()
630 """get_example_path(std::string fname) -> std::string"""
631 return _IMP_score_functor.get_example_path(fname)
634 """get_data_path(std::string fname) -> std::string"""
635 return _IMP_score_functor.get_data_path(fname)
637 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
def get_module_version
Return the version of this module, as a string.
def get_example_path
Return the full path to one of this module's example files.
Make CGAL functionality available to IMP.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...