IMP logo
IMP Reference Guide  2.16.0
The Integrative Modeling Platform
version 2.16.0
rmf/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_rmf', [dirname(__file__)])
23  except ImportError:
24  import _IMP_rmf
25  return _IMP_rmf
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_rmf', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_rmf = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_rmf
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_RMF_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_RMF_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_rmf.delete_IMP_RMF_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_RMF_SwigPyIterator self) -> PyObject *"""
125  return _IMP_rmf.IMP_RMF_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_RMF_SwigPyIterator self, size_t n=1) -> IMP_RMF_SwigPyIterator
131  incr(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator
132  """
133  return _IMP_rmf.IMP_RMF_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_RMF_SwigPyIterator self, size_t n=1) -> IMP_RMF_SwigPyIterator
139  decr(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator
140  """
141  return _IMP_rmf.IMP_RMF_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_rmf.IMP_RMF_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
151  return _IMP_rmf.IMP_RMF_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator"""
156  return _IMP_rmf.IMP_RMF_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_RMF_SwigPyIterator self) -> PyObject *"""
161  return _IMP_rmf.IMP_RMF_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_RMF_SwigPyIterator self) -> PyObject *"""
166  return _IMP_rmf.IMP_RMF_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_RMF_SwigPyIterator self) -> PyObject *"""
171  return _IMP_rmf.IMP_RMF_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
176  return _IMP_rmf.IMP_RMF_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
181  return _IMP_rmf.IMP_RMF_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
186  return _IMP_rmf.IMP_RMF_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
191  return _IMP_rmf.IMP_RMF_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
196  return _IMP_rmf.IMP_RMF_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
201  return _IMP_rmf.IMP_RMF_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator
207  __sub__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_rmf.IMP_RMF_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_RMF_SwigPyIterator_swigregister = _IMP_rmf.IMP_RMF_SwigPyIterator_swigregister
214 IMP_RMF_SwigPyIterator_swigregister(IMP_RMF_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_rmf.IMP_DEBUG_swigconstant(_IMP_rmf)
224 IMP_DEBUG = _IMP_rmf.IMP_DEBUG
225 
226 _IMP_rmf.IMP_RELEASE_swigconstant(_IMP_rmf)
227 IMP_RELEASE = _IMP_rmf.IMP_RELEASE
228 
229 _IMP_rmf.IMP_SILENT_swigconstant(_IMP_rmf)
230 IMP_SILENT = _IMP_rmf.IMP_SILENT
231 
232 _IMP_rmf.IMP_PROGRESS_swigconstant(_IMP_rmf)
233 IMP_PROGRESS = _IMP_rmf.IMP_PROGRESS
234 
235 _IMP_rmf.IMP_TERSE_swigconstant(_IMP_rmf)
236 IMP_TERSE = _IMP_rmf.IMP_TERSE
237 
238 _IMP_rmf.IMP_VERBOSE_swigconstant(_IMP_rmf)
239 IMP_VERBOSE = _IMP_rmf.IMP_VERBOSE
240 
241 _IMP_rmf.IMP_MEMORY_swigconstant(_IMP_rmf)
242 IMP_MEMORY = _IMP_rmf.IMP_MEMORY
243 
244 _IMP_rmf.IMP_NONE_swigconstant(_IMP_rmf)
245 IMP_NONE = _IMP_rmf.IMP_NONE
246 
247 _IMP_rmf.IMP_USAGE_swigconstant(_IMP_rmf)
248 IMP_USAGE = _IMP_rmf.IMP_USAGE
249 
250 _IMP_rmf.IMP_INTERNAL_swigconstant(_IMP_rmf)
251 IMP_INTERNAL = _IMP_rmf.IMP_INTERNAL
252 
253 _IMP_rmf.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_rmf)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_rmf.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_rmf.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_rmf)
257 IMP_COMPILER_HAS_AUTO = _IMP_rmf.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_rmf.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_rmf)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rmf.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_rmf.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_rmf)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_rmf.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_rmf.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rmf.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_rmf.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_rmf)
269 IMP_KERNEL_HAS_NUMPY = _IMP_rmf.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_rmf.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_rmf)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rmf.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_rmf)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_rmf)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_rmf.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_rmf)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_rmf.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_rmf._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_rmf._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_rmf.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_rmf)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_rmf.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_rmf.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_rmf)
329 IMP_COMPILER_HAS_FINAL = _IMP_rmf.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_rmf.IMP_HAS_NOEXCEPT_swigconstant(_IMP_rmf)
332 IMP_HAS_NOEXCEPT = _IMP_rmf.IMP_HAS_NOEXCEPT
333 
334 _IMP_rmf.IMP_C_OPEN_BINARY_swigconstant(_IMP_rmf)
335 IMP_C_OPEN_BINARY = _IMP_rmf.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_rmf.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CGAL_HAS_BOOST_FILESYSTEM
340 
341 _IMP_rmf.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_rmf.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CGAL_HAS_BOOST_RANDOM
346 
347 _IMP_rmf.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CGAL_HAS_BOOST_SYSTEM
349 
350 _IMP_rmf.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_rmf)
351 IMP_CGAL_HAS_NUMPY = _IMP_rmf.IMP_CGAL_HAS_NUMPY
352 
353 _IMP_rmf.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_rmf)
354 IMPCGAL_SHOW_WARNINGS = _IMP_rmf.IMPCGAL_SHOW_WARNINGS
355 import IMP.cgal
356 
357 _IMP_rmf.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rmf.IMP_ALGEBRA_HAS_IMP_CGAL
359 
360 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
362 
363 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
365 
366 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_RANDOM
368 
369 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SYSTEM
371 
372 _IMP_rmf.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_rmf)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_rmf.IMP_ALGEBRA_HAS_CGAL
374 
375 _IMP_rmf.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_rmf)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_rmf.IMP_ALGEBRA_HAS_NUMPY
377 
378 _IMP_rmf.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_rmf)
379 IMP_ALGEBRA_HAS_ANN = _IMP_rmf.IMP_ALGEBRA_HAS_ANN
380 
381 _IMP_rmf.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_rmf)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_rmf.IMPALGEBRA_SHOW_WARNINGS
383 import IMP.algebra
384 
385 _IMP_rmf.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
386 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rmf.IMP_DISPLAY_HAS_IMP_CGAL
387 
388 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
389 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
390 
391 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
392 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
393 
394 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
395 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_RANDOM
396 
397 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
398 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SYSTEM
399 
400 _IMP_rmf.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_rmf)
401 IMP_DISPLAY_HAS_CGAL = _IMP_rmf.IMP_DISPLAY_HAS_CGAL
402 
403 _IMP_rmf.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_rmf)
404 IMP_DISPLAY_HAS_NUMPY = _IMP_rmf.IMP_DISPLAY_HAS_NUMPY
405 
406 _IMP_rmf.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_rmf)
407 IMPDISPLAY_SHOW_WARNINGS = _IMP_rmf.IMPDISPLAY_SHOW_WARNINGS
408 import IMP.display
409 
410 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
411 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
412 
413 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
414 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
415 
416 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
417 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
418 
419 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
420 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
421 
422 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
423 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
424 
425 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_rmf)
426 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_CGAL
427 
428 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_rmf)
429 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_HDF5
430 
431 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_rmf)
432 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_NUMPY
433 
434 _IMP_rmf.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_rmf)
435 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rmf.IMPSCOREFUNCTOR_SHOW_WARNINGS
436 import IMP.score_functor
437 
438 _IMP_rmf.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
439 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_rmf.IMP_STATISTICS_HAS_IMP_CGAL
440 
441 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
442 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
443 
444 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
445 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
446 
447 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
448 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_RANDOM
449 
450 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
451 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SYSTEM
452 
453 _IMP_rmf.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_rmf)
454 IMP_STATISTICS_HAS_CGAL = _IMP_rmf.IMP_STATISTICS_HAS_CGAL
455 
456 _IMP_rmf.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_rmf)
457 IMP_STATISTICS_HAS_NUMPY = _IMP_rmf.IMP_STATISTICS_HAS_NUMPY
458 
459 _IMP_rmf.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_rmf)
460 IMPSTATISTICS_SHOW_WARNINGS = _IMP_rmf.IMPSTATISTICS_SHOW_WARNINGS
461 import IMP.statistics
462 
463 _IMP_rmf.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
464 IMP_CORE_HAS_IMP_CGAL = _IMP_rmf.IMP_CORE_HAS_IMP_CGAL
465 
466 _IMP_rmf.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
467 IMP_CORE_HAS_IMP_KERNEL = _IMP_rmf.IMP_CORE_HAS_IMP_KERNEL
468 
469 _IMP_rmf.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
470 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CORE_HAS_BOOST_FILESYSTEM
471 
472 _IMP_rmf.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
473 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
474 
475 _IMP_rmf.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
476 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CORE_HAS_BOOST_RANDOM
477 
478 _IMP_rmf.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
479 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CORE_HAS_BOOST_SYSTEM
480 
481 _IMP_rmf.IMP_CORE_HAS_CGAL_swigconstant(_IMP_rmf)
482 IMP_CORE_HAS_CGAL = _IMP_rmf.IMP_CORE_HAS_CGAL
483 
484 _IMP_rmf.IMP_CORE_HAS_HDF5_swigconstant(_IMP_rmf)
485 IMP_CORE_HAS_HDF5 = _IMP_rmf.IMP_CORE_HAS_HDF5
486 
487 _IMP_rmf.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_rmf)
488 IMP_CORE_HAS_NUMPY = _IMP_rmf.IMP_CORE_HAS_NUMPY
489 
490 _IMP_rmf.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_rmf)
491 IMPCORE_SHOW_WARNINGS = _IMP_rmf.IMPCORE_SHOW_WARNINGS
492 import IMP.core
493 
494 _IMP_rmf.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rmf)
495 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rmf.IMP_CONTAINER_HAS_IMP_ALGEBRA
496 
497 _IMP_rmf.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
498 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rmf.IMP_CONTAINER_HAS_IMP_CGAL
499 
500 _IMP_rmf.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
501 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rmf.IMP_CONTAINER_HAS_IMP_DISPLAY
502 
503 _IMP_rmf.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
504 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rmf.IMP_CONTAINER_HAS_IMP_KERNEL
505 
506 _IMP_rmf.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
507 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
508 
509 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
510 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
511 
512 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
513 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
514 
515 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
516 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_RANDOM
517 
518 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
519 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SYSTEM
520 
521 _IMP_rmf.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_rmf)
522 IMP_CONTAINER_HAS_CGAL = _IMP_rmf.IMP_CONTAINER_HAS_CGAL
523 
524 _IMP_rmf.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_rmf)
525 IMP_CONTAINER_HAS_HDF5 = _IMP_rmf.IMP_CONTAINER_HAS_HDF5
526 
527 _IMP_rmf.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_rmf)
528 IMP_CONTAINER_HAS_NUMPY = _IMP_rmf.IMP_CONTAINER_HAS_NUMPY
529 
530 _IMP_rmf.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
531 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_rmf.IMP_CONTAINER_HAS_PYTHON_IHM
532 
533 _IMP_rmf.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_rmf)
534 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_rmf.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
535 
536 _IMP_rmf.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_rmf)
537 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_rmf.IMP_CONTAINER_HAS_ROBIN_MAP
538 
539 _IMP_rmf.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_rmf)
540 IMPCONTAINER_SHOW_WARNINGS = _IMP_rmf.IMPCONTAINER_SHOW_WARNINGS
541 import IMP.container
542 
543 _IMP_rmf.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
544 IMP_ATOM_HAS_IMP_CGAL = _IMP_rmf.IMP_ATOM_HAS_IMP_CGAL
545 
546 _IMP_rmf.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
547 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rmf.IMP_ATOM_HAS_IMP_KERNEL
548 
549 _IMP_rmf.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
550 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
551 
552 _IMP_rmf.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
553 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
554 
555 _IMP_rmf.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
556 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ATOM_HAS_BOOST_RANDOM
557 
558 _IMP_rmf.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
559 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rmf.IMP_ATOM_HAS_BOOST_REGEX
560 
561 _IMP_rmf.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
562 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ATOM_HAS_BOOST_SYSTEM
563 
564 _IMP_rmf.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_rmf)
565 IMP_ATOM_HAS_CGAL = _IMP_rmf.IMP_ATOM_HAS_CGAL
566 
567 _IMP_rmf.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_rmf)
568 IMP_ATOM_HAS_HDF5 = _IMP_rmf.IMP_ATOM_HAS_HDF5
569 
570 _IMP_rmf.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_rmf)
571 IMP_ATOM_HAS_NUMPY = _IMP_rmf.IMP_ATOM_HAS_NUMPY
572 
573 _IMP_rmf.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
574 IMP_ATOM_HAS_PYTHON_IHM = _IMP_rmf.IMP_ATOM_HAS_PYTHON_IHM
575 
576 _IMP_rmf.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_rmf)
577 IMPATOM_SHOW_WARNINGS = _IMP_rmf.IMPATOM_SHOW_WARNINGS
578 
579 _IMP_rmf.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_rmf)
580 IMP_ATOM_TYPE_INDEX = _IMP_rmf.IMP_ATOM_TYPE_INDEX
581 
582 _IMP_rmf.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_rmf)
583 IMP_RESIDUE_TYPE_INDEX = _IMP_rmf.IMP_RESIDUE_TYPE_INDEX
584 
585 _IMP_rmf.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_rmf)
586 IMP_HIERARCHY_TYPE_INDEX = _IMP_rmf.IMP_HIERARCHY_TYPE_INDEX
587 
588 _IMP_rmf.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_rmf)
589 IMP_CHAIN_TYPE_INDEX = _IMP_rmf.IMP_CHAIN_TYPE_INDEX
590 import IMP.atom
591 
592 _IMP_rmf.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
593 IMP_EM_HAS_IMP_CGAL = _IMP_rmf.IMP_EM_HAS_IMP_CGAL
594 
595 _IMP_rmf.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_rmf)
596 IMP_EM_HAS_IMP_CONTAINER = _IMP_rmf.IMP_EM_HAS_IMP_CONTAINER
597 
598 _IMP_rmf.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
599 IMP_EM_HAS_IMP_DISPLAY = _IMP_rmf.IMP_EM_HAS_IMP_DISPLAY
600 
601 _IMP_rmf.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
602 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_EM_HAS_IMP_SCORE_FUNCTOR
603 
604 _IMP_rmf.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
605 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_EM_HAS_BOOST_FILESYSTEM
606 
607 _IMP_rmf.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
608 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
609 
610 _IMP_rmf.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
611 IMP_EM_HAS_BOOST_RANDOM = _IMP_rmf.IMP_EM_HAS_BOOST_RANDOM
612 
613 _IMP_rmf.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
614 IMP_EM_HAS_BOOST_REGEX = _IMP_rmf.IMP_EM_HAS_BOOST_REGEX
615 
616 _IMP_rmf.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
617 IMP_EM_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_EM_HAS_BOOST_SYSTEM
618 
619 _IMP_rmf.IMP_EM_HAS_CGAL_swigconstant(_IMP_rmf)
620 IMP_EM_HAS_CGAL = _IMP_rmf.IMP_EM_HAS_CGAL
621 
622 _IMP_rmf.IMP_EM_HAS_HDF5_swigconstant(_IMP_rmf)
623 IMP_EM_HAS_HDF5 = _IMP_rmf.IMP_EM_HAS_HDF5
624 
625 _IMP_rmf.IMP_EM_HAS_NUMPY_swigconstant(_IMP_rmf)
626 IMP_EM_HAS_NUMPY = _IMP_rmf.IMP_EM_HAS_NUMPY
627 
628 _IMP_rmf.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
629 IMP_EM_HAS_PYTHON_IHM = _IMP_rmf.IMP_EM_HAS_PYTHON_IHM
630 
631 _IMP_rmf.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_rmf)
632 IMPEM_SHOW_WARNINGS = _IMP_rmf.IMPEM_SHOW_WARNINGS
633 import IMP.em
634 
635 _IMP_rmf.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
636 IMP_SAXS_HAS_IMP_CGAL = _IMP_rmf.IMP_SAXS_HAS_IMP_CGAL
637 
638 _IMP_rmf.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_rmf)
639 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_rmf.IMP_SAXS_HAS_IMP_CONTAINER
640 
641 _IMP_rmf.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
642 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_rmf.IMP_SAXS_HAS_IMP_DISPLAY
643 
644 _IMP_rmf.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
645 IMP_SAXS_HAS_IMP_KERNEL = _IMP_rmf.IMP_SAXS_HAS_IMP_KERNEL
646 
647 _IMP_rmf.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
648 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
649 
650 _IMP_rmf.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
651 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_SAXS_HAS_BOOST_FILESYSTEM
652 
653 _IMP_rmf.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
654 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
655 
656 _IMP_rmf.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
657 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_rmf.IMP_SAXS_HAS_BOOST_RANDOM
658 
659 _IMP_rmf.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
660 IMP_SAXS_HAS_BOOST_REGEX = _IMP_rmf.IMP_SAXS_HAS_BOOST_REGEX
661 
662 _IMP_rmf.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
663 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_SAXS_HAS_BOOST_SYSTEM
664 
665 _IMP_rmf.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_rmf)
666 IMP_SAXS_HAS_CGAL = _IMP_rmf.IMP_SAXS_HAS_CGAL
667 
668 _IMP_rmf.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_rmf)
669 IMP_SAXS_HAS_HDF5 = _IMP_rmf.IMP_SAXS_HAS_HDF5
670 
671 _IMP_rmf.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_rmf)
672 IMP_SAXS_HAS_NUMPY = _IMP_rmf.IMP_SAXS_HAS_NUMPY
673 
674 _IMP_rmf.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
675 IMP_SAXS_HAS_PYTHON_IHM = _IMP_rmf.IMP_SAXS_HAS_PYTHON_IHM
676 
677 _IMP_rmf.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_rmf)
678 IMPSAXS_SHOW_WARNINGS = _IMP_rmf.IMPSAXS_SHOW_WARNINGS
679 import IMP.saxs
680 
681 _IMP_rmf.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
682 IMP_ISD_HAS_IMP_CGAL = _IMP_rmf.IMP_ISD_HAS_IMP_CGAL
683 
684 _IMP_rmf.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
685 IMP_ISD_HAS_IMP_DISPLAY = _IMP_rmf.IMP_ISD_HAS_IMP_DISPLAY
686 
687 _IMP_rmf.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
688 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
689 
690 _IMP_rmf.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
691 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_ISD_HAS_BOOST_FILESYSTEM
692 
693 _IMP_rmf.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
694 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
695 
696 _IMP_rmf.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
697 IMP_ISD_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ISD_HAS_BOOST_RANDOM
698 
699 _IMP_rmf.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
700 IMP_ISD_HAS_BOOST_REGEX = _IMP_rmf.IMP_ISD_HAS_BOOST_REGEX
701 
702 _IMP_rmf.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
703 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ISD_HAS_BOOST_SYSTEM
704 
705 _IMP_rmf.IMP_ISD_HAS_CGAL_swigconstant(_IMP_rmf)
706 IMP_ISD_HAS_CGAL = _IMP_rmf.IMP_ISD_HAS_CGAL
707 
708 _IMP_rmf.IMP_ISD_HAS_HDF5_swigconstant(_IMP_rmf)
709 IMP_ISD_HAS_HDF5 = _IMP_rmf.IMP_ISD_HAS_HDF5
710 
711 _IMP_rmf.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_rmf)
712 IMP_ISD_HAS_NUMPY = _IMP_rmf.IMP_ISD_HAS_NUMPY
713 
714 _IMP_rmf.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
715 IMP_ISD_HAS_PYTHON_IHM = _IMP_rmf.IMP_ISD_HAS_PYTHON_IHM
716 
717 _IMP_rmf.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_rmf)
718 IMPISD_SHOW_WARNINGS = _IMP_rmf.IMPISD_SHOW_WARNINGS
719 import IMP.isd
720 
721 _IMP_rmf.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
722 IMP_RMF_HAS_IMP_CGAL = _IMP_rmf.IMP_RMF_HAS_IMP_CGAL
723 
724 _IMP_rmf.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_rmf)
725 IMP_RMF_HAS_IMP_EM = _IMP_rmf.IMP_RMF_HAS_IMP_EM
726 
727 _IMP_rmf.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_rmf)
728 IMP_RMF_HAS_IMP_SAXS = _IMP_rmf.IMP_RMF_HAS_IMP_SAXS
729 
730 _IMP_rmf.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
731 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
732 
733 _IMP_rmf.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_rmf)
734 IMP_RMF_HAS_IMP_STATISTICS = _IMP_rmf.IMP_RMF_HAS_IMP_STATISTICS
735 
736 _IMP_rmf.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
737 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_RMF_HAS_BOOST_FILESYSTEM
738 
739 _IMP_rmf.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
740 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
741 
742 _IMP_rmf.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
743 IMP_RMF_HAS_BOOST_RANDOM = _IMP_rmf.IMP_RMF_HAS_BOOST_RANDOM
744 
745 _IMP_rmf.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
746 IMP_RMF_HAS_BOOST_REGEX = _IMP_rmf.IMP_RMF_HAS_BOOST_REGEX
747 
748 _IMP_rmf.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
749 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_RMF_HAS_BOOST_SYSTEM
750 
751 _IMP_rmf.IMP_RMF_HAS_CGAL_swigconstant(_IMP_rmf)
752 IMP_RMF_HAS_CGAL = _IMP_rmf.IMP_RMF_HAS_CGAL
753 
754 _IMP_rmf.IMP_RMF_HAS_HDF5_swigconstant(_IMP_rmf)
755 IMP_RMF_HAS_HDF5 = _IMP_rmf.IMP_RMF_HAS_HDF5
756 
757 _IMP_rmf.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_rmf)
758 IMP_RMF_HAS_NUMPY = _IMP_rmf.IMP_RMF_HAS_NUMPY
759 
760 _IMP_rmf.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
761 IMP_RMF_HAS_PYTHON_IHM = _IMP_rmf.IMP_RMF_HAS_PYTHON_IHM
762 
763 _IMP_rmf.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_rmf)
764 IMPRMF_SHOW_WARNINGS = _IMP_rmf.IMPRMF_SHOW_WARNINGS
765 import RMF
766 
767 _object_types.append("SaveOptimizerState")
768 
769 
770 def _object_cast_to_SaveOptimizerState(o):
771  """_object_cast_to_SaveOptimizerState(Object o) -> SaveOptimizerState"""
772  return _IMP_rmf._object_cast_to_SaveOptimizerState(o)
773 
774 _object_types.append("LoadLink")
775 
776 
777 def _object_cast_to_LoadLink(o):
778  """_object_cast_to_LoadLink(Object o) -> LoadLink"""
779  return _IMP_rmf._object_cast_to_LoadLink(o)
780 
781 _object_types.append("SaveLink")
782 
783 
784 def _object_cast_to_SaveLink(o):
785  """_object_cast_to_SaveLink(Object o) -> SaveLink"""
786  return _IMP_rmf._object_cast_to_SaveLink(o)
787 
788 _object_types.append("HierarchySaveLink")
789 
790 
791 def _object_cast_to_HierarchySaveLink(o):
792  """_object_cast_to_HierarchySaveLink(Object o) -> HierarchySaveLink"""
793  return _IMP_rmf._object_cast_to_HierarchySaveLink(o)
794 
795 _object_types.append("HierarchyLoadLink")
796 
797 
798 def _object_cast_to_HierarchyLoadLink(o):
799  """_object_cast_to_HierarchyLoadLink(Object o) -> HierarchyLoadLink"""
800  return _IMP_rmf._object_cast_to_HierarchyLoadLink(o)
801 class LoadLink(IMP.Object):
802  """Proxy of C++ IMP::rmf::LoadLink class"""
803  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
804 
805  def do_load(self, fh):
806  """do_load(LoadLink self, FileConstHandle fh)"""
807  return _IMP_rmf.LoadLink_do_load(self, fh)
808 
809 
810  def __init__(self, name):
811  """__init__(IMP::rmf::LoadLink self, std::string name) -> LoadLink"""
812  if self.__class__ == LoadLink:
813  _self = None
814  else:
815  _self = self
816  this = _IMP_rmf.new_LoadLink(_self, name)
817  try:
818  self.this.append(this)
819  except:
820  self.this = this
821 
822  if self.__class__ != LoadLink:
823  _director_objects.register(self)
824 
825 
826 
827 
828  def load(self, fh):
829  """load(LoadLink self, FileConstHandle fh)"""
830  return _IMP_rmf.LoadLink_load(self, fh)
831 
832  __swig_destroy__ = _IMP_rmf.delete_LoadLink
833  __del__ = lambda self: None
834 
835  def __str__(self):
836  """__str__(LoadLink self) -> std::string"""
837  return _IMP_rmf.LoadLink___str__(self)
838 
839 
840  def __repr__(self):
841  """__repr__(LoadLink self) -> std::string"""
842  return _IMP_rmf.LoadLink___repr__(self)
843 
844 
845  @staticmethod
846  def get_from(o):
847  return _object_cast_to_LoadLink(o)
848 
849 
850  def get_type_name(self):
851  return self.__class__.__name__
852  def do_show(self, out):
853  pass
854  def get_version_info(self):
855  if"IMP::rmf" == "IMP":
856  return VersionInfo(self.__module__,
857  __import__(self.__module__).get_module_version())
858  else:
859  return IMP.VersionInfo(self.__module__,
860  __import__(self.__module__).get_module_version())
861  @staticmethod
862  def get_from(o):
863  return _object_cast_to_LoadLink(o)
864 
865  def __disown__(self):
866  self.this.disown()
867  _IMP_rmf.disown_LoadLink(self)
868  return weakref_proxy(self)
869 
870  def do_destroy(self):
871  """do_destroy(LoadLink self)"""
872  return _IMP_rmf.LoadLink_do_destroy(self)
873 
874 LoadLink_swigregister = _IMP_rmf.LoadLink_swigregister
875 LoadLink_swigregister(LoadLink)
876 
877 class SaveLink(IMP.Object):
878  """Proxy of C++ IMP::rmf::SaveLink class"""
879  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
880 
881  def do_save(self, hf):
882  """do_save(SaveLink self, FileHandle hf)"""
883  return _IMP_rmf.SaveLink_do_save(self, hf)
884 
885 
886  def __init__(self, name):
887  """__init__(IMP::rmf::SaveLink self, std::string name) -> SaveLink"""
888  if self.__class__ == SaveLink:
889  _self = None
890  else:
891  _self = self
892  this = _IMP_rmf.new_SaveLink(_self, name)
893  try:
894  self.this.append(this)
895  except:
896  self.this = this
897 
898  if self.__class__ != SaveLink:
899  _director_objects.register(self)
900 
901 
902 
903 
904  def save(self, fh):
905  """save(SaveLink self, FileHandle fh)"""
906  return _IMP_rmf.SaveLink_save(self, fh)
907 
908  __swig_destroy__ = _IMP_rmf.delete_SaveLink
909  __del__ = lambda self: None
910 
911  def __str__(self):
912  """__str__(SaveLink self) -> std::string"""
913  return _IMP_rmf.SaveLink___str__(self)
914 
915 
916  def __repr__(self):
917  """__repr__(SaveLink self) -> std::string"""
918  return _IMP_rmf.SaveLink___repr__(self)
919 
920 
921  @staticmethod
922  def get_from(o):
923  return _object_cast_to_SaveLink(o)
924 
925 
926  def get_type_name(self):
927  return self.__class__.__name__
928  def do_show(self, out):
929  pass
930  def get_version_info(self):
931  if"IMP::rmf" == "IMP":
932  return VersionInfo(self.__module__,
933  __import__(self.__module__).get_module_version())
934  else:
935  return IMP.VersionInfo(self.__module__,
936  __import__(self.__module__).get_module_version())
937  @staticmethod
938  def get_from(o):
939  return _object_cast_to_SaveLink(o)
940 
941  def __disown__(self):
942  self.this.disown()
943  _IMP_rmf.disown_SaveLink(self)
944  return weakref_proxy(self)
945 
946  def do_destroy(self):
947  """do_destroy(SaveLink self)"""
948  return _IMP_rmf.SaveLink_do_destroy(self)
949 
950 SaveLink_swigregister = _IMP_rmf.SaveLink_swigregister
951 SaveLink_swigregister(SaveLink)
952 
953 
954 def add_hierarchies(*args):
955  """
956  add_hierarchies(FileHandle fh, IMP::atom::Hierarchies const & hs)
957  add_hierarchies(NodeHandle fh, IMP::atom::Hierarchies const & hs)
958  """
959  return _IMP_rmf.add_hierarchies(*args)
960 
961 def add_hierarchy(fh, hs):
962  """add_hierarchy(FileHandle fh, Hierarchy hs)"""
963  return _IMP_rmf.add_hierarchy(fh, hs)
964 
965 def create_hierarchies(fh, m):
966  """create_hierarchies(FileConstHandle fh, Model m) -> IMP::atom::Hierarchies"""
967  return _IMP_rmf.create_hierarchies(fh, m)
968 
969 def link_hierarchies(fh, hs):
970  """link_hierarchies(FileConstHandle fh, IMP::atom::Hierarchies const & hs)"""
971  return _IMP_rmf.link_hierarchies(fh, hs)
972 
973 def add_restraints(*args):
974  """
975  add_restraints(FileHandle fh, IMP::Restraints const & hs)
976  add_restraints(NodeHandle fh, IMP::Restraints const & hs)
977  """
978  return _IMP_rmf.add_restraints(*args)
979 
980 def add_restraint(fh, hs):
981  """add_restraint(FileHandle fh, Restraint hs)"""
982  return _IMP_rmf.add_restraint(fh, hs)
983 
984 def create_restraints(fh, m):
985  """create_restraints(FileConstHandle fh, Model m) -> IMP::Restraints"""
986  return _IMP_rmf.create_restraints(fh, m)
987 
988 def link_restraints(fh, hs):
989  """link_restraints(FileConstHandle fh, IMP::Restraints const & hs)"""
990  return _IMP_rmf.link_restraints(fh, hs)
991 
992 def add_restraints_as_bonds(fh, rs):
993  """add_restraints_as_bonds(FileHandle fh, IMP::Restraints const & rs)"""
994  return _IMP_rmf.add_restraints_as_bonds(fh, rs)
995 
996 def set_maximum_number_of_terms(fh, num):
997  """set_maximum_number_of_terms(FileHandle fh, unsigned int num)"""
998  return _IMP_rmf.set_maximum_number_of_terms(fh, num)
999 
1000 def add_particles(*args):
1001  """
1002  add_particles(FileHandle fh, IMP::ParticlesTemp const & hs)
1003  add_particles(NodeHandle fh, IMP::ParticlesTemp const & hs)
1004  """
1005  return _IMP_rmf.add_particles(*args)
1006 
1007 def add_particle(fh, hs):
1008  """add_particle(FileHandle fh, Particle hs)"""
1009  return _IMP_rmf.add_particle(fh, hs)
1010 
1011 def create_particles(fh, m):
1012  """create_particles(FileConstHandle fh, Model m) -> IMP::ParticlesTemp"""
1013  return _IMP_rmf.create_particles(fh, m)
1014 
1015 def link_particles(fh, hs):
1016  """link_particles(FileConstHandle fh, IMP::ParticlesTemp const & hs)"""
1017  return _IMP_rmf.link_particles(fh, hs)
1018 
1019 def add_geometries(*args):
1020  """
1021  add_geometries(FileHandle file, IMP::display::GeometriesTemp const & r)
1022  add_geometries(NodeHandle parent, IMP::display::GeometriesTemp const & r)
1023  """
1024  return _IMP_rmf.add_geometries(*args)
1025 
1026 def add_static_geometries(parent, r):
1027  """add_static_geometries(FileHandle parent, IMP::display::GeometriesTemp const & r)"""
1028  return _IMP_rmf.add_static_geometries(parent, r)
1029 
1030 def add_geometry(file, r):
1031  """add_geometry(FileHandle file, Geometry r)"""
1032  return _IMP_rmf.add_geometry(file, r)
1033 
1034 def create_geometries(parent):
1035  """create_geometries(FileConstHandle parent) -> IMP::display::Geometries"""
1036  return _IMP_rmf.create_geometries(parent)
1037 
1038 def link_geometries(parent, r):
1039  """link_geometries(FileConstHandle parent, IMP::display::GeometriesTemp const & r)"""
1040  return _IMP_rmf.link_geometries(parent, r)
1041 
1042 def set_association(nh, o, overwrite=False):
1043  """
1044  set_association(NodeConstHandle nh, Object o, bool overwrite=False)
1045  set_association(NodeConstHandle nh, Object o)
1046  """
1047  return _IMP_rmf.set_association(nh, o, overwrite)
1048 
1049 def get_node_from_association(*args):
1050  """
1051  get_node_from_association(FileConstHandle nh, Object oi) -> NodeConstHandle
1052  get_node_from_association(FileHandle nh, Object oi) -> NodeHandle
1053  """
1054  return _IMP_rmf.get_node_from_association(*args)
1055 
1056 def get_has_associated_node(nh, oi):
1057  """get_has_associated_node(FileConstHandle nh, Object oi) -> bool"""
1058  return _IMP_rmf.get_has_associated_node(nh, oi)
1059 class SaveOptimizerState(IMP.OptimizerState):
1060  """Proxy of C++ IMP::rmf::SaveOptimizerState class"""
1061  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1062 
1063  def __init__(self, m, fh):
1064  """__init__(IMP::rmf::SaveOptimizerState self, Model m, FileHandle fh) -> SaveOptimizerState"""
1065  this = _IMP_rmf.new_SaveOptimizerState(m, fh)
1066  try:
1067  self.this.append(this)
1068  except:
1069  self.this = this
1070 
1071  def remove_hierarchy(self, d):
1072  """remove_hierarchy(SaveOptimizerState self, Particle d)"""
1073  return _IMP_rmf.SaveOptimizerState_remove_hierarchy(self, d)
1074 
1075 
1076  def remove_hierarchies(self, d):
1077  """remove_hierarchies(SaveOptimizerState self, IMP::Particles const & d)"""
1078  return _IMP_rmf.SaveOptimizerState_remove_hierarchies(self, d)
1079 
1080 
1081  def set_hierarchies(self, ps):
1082  """set_hierarchies(SaveOptimizerState self, IMP::Particles const & ps)"""
1083  return _IMP_rmf.SaveOptimizerState_set_hierarchies(self, ps)
1084 
1085 
1086  def set_hierarchies_order(self, objs):
1087  """set_hierarchies_order(SaveOptimizerState self, IMP::Particles const & objs)"""
1088  return _IMP_rmf.SaveOptimizerState_set_hierarchies_order(self, objs)
1089 
1090 
1091  def add_hierarchy(self, obj):
1092  """add_hierarchy(SaveOptimizerState self, Particle obj) -> unsigned int"""
1093  return _IMP_rmf.SaveOptimizerState_add_hierarchy(self, obj)
1094 
1095 
1096  def add_hierarchies(self, objs):
1097  """add_hierarchies(SaveOptimizerState self, IMP::Particles const & objs)"""
1098  return _IMP_rmf.SaveOptimizerState_add_hierarchies(self, objs)
1099 
1100 
1101  def clear_hierarchies(self):
1102  """clear_hierarchies(SaveOptimizerState self)"""
1103  return _IMP_rmf.SaveOptimizerState_clear_hierarchies(self)
1104 
1105 
1106  def get_number_of_hierarchies(self):
1107  """get_number_of_hierarchies(SaveOptimizerState self) -> unsigned int"""
1108  return _IMP_rmf.SaveOptimizerState_get_number_of_hierarchies(self)
1109 
1110 
1111  def get_has_hierarchies(self):
1112  """get_has_hierarchies(SaveOptimizerState self) -> bool"""
1113  return _IMP_rmf.SaveOptimizerState_get_has_hierarchies(self)
1114 
1115 
1116  def get_hierarchy(self, i):
1117  """get_hierarchy(SaveOptimizerState self, unsigned int i) -> Particle"""
1118  return _IMP_rmf.SaveOptimizerState_get_hierarchy(self, i)
1119 
1120 
1121  def get_hierarchies(self):
1122  """get_hierarchies(SaveOptimizerState self) -> IMP::Particles"""
1123  return _IMP_rmf.SaveOptimizerState_get_hierarchies(self)
1124 
1125 
1126  def reserve_hierarchies(self, sz):
1127  """reserve_hierarchies(SaveOptimizerState self, unsigned int sz)"""
1128  return _IMP_rmf.SaveOptimizerState_reserve_hierarchies(self, sz)
1129 
1130 
1131  def remove_restraint(self, d):
1132  """remove_restraint(SaveOptimizerState self, Restraint d)"""
1133  return _IMP_rmf.SaveOptimizerState_remove_restraint(self, d)
1134 
1135 
1136  def remove_restraints(self, d):
1137  """remove_restraints(SaveOptimizerState self, IMP::Restraints const & d)"""
1138  return _IMP_rmf.SaveOptimizerState_remove_restraints(self, d)
1139 
1140 
1141  def set_restraints(self, ps):
1142  """set_restraints(SaveOptimizerState self, IMP::Restraints const & ps)"""
1143  return _IMP_rmf.SaveOptimizerState_set_restraints(self, ps)
1144 
1145 
1146  def set_restraints_order(self, objs):
1147  """set_restraints_order(SaveOptimizerState self, IMP::Restraints const & objs)"""
1148  return _IMP_rmf.SaveOptimizerState_set_restraints_order(self, objs)
1149 
1150 
1151  def add_restraint(self, obj):
1152  """add_restraint(SaveOptimizerState self, Restraint obj) -> unsigned int"""
1153  return _IMP_rmf.SaveOptimizerState_add_restraint(self, obj)
1154 
1155 
1156  def add_restraints(self, objs):
1157  """add_restraints(SaveOptimizerState self, IMP::Restraints const & objs)"""
1158  return _IMP_rmf.SaveOptimizerState_add_restraints(self, objs)
1159 
1160 
1161  def clear_restraints(self):
1162  """clear_restraints(SaveOptimizerState self)"""
1163  return _IMP_rmf.SaveOptimizerState_clear_restraints(self)
1164 
1165 
1166  def get_number_of_restraints(self):
1167  """get_number_of_restraints(SaveOptimizerState self) -> unsigned int"""
1168  return _IMP_rmf.SaveOptimizerState_get_number_of_restraints(self)
1169 
1170 
1171  def get_has_restraints(self):
1172  """get_has_restraints(SaveOptimizerState self) -> bool"""
1173  return _IMP_rmf.SaveOptimizerState_get_has_restraints(self)
1174 
1175 
1176  def get_restraint(self, i):
1177  """get_restraint(SaveOptimizerState self, unsigned int i) -> Restraint"""
1178  return _IMP_rmf.SaveOptimizerState_get_restraint(self, i)
1179 
1180 
1181  def get_restraints(self):
1182  """get_restraints(SaveOptimizerState self) -> IMP::Restraints"""
1183  return _IMP_rmf.SaveOptimizerState_get_restraints(self)
1184 
1185 
1186  def reserve_restraints(self, sz):
1187  """reserve_restraints(SaveOptimizerState self, unsigned int sz)"""
1188  return _IMP_rmf.SaveOptimizerState_reserve_restraints(self, sz)
1189 
1190 
1191  def remove_particle(self, d):
1192  """remove_particle(SaveOptimizerState self, Particle d)"""
1193  return _IMP_rmf.SaveOptimizerState_remove_particle(self, d)
1194 
1195 
1196  def remove_particles(self, d):
1197  """remove_particles(SaveOptimizerState self, IMP::Particles const & d)"""
1198  return _IMP_rmf.SaveOptimizerState_remove_particles(self, d)
1199 
1200 
1201  def set_particles(self, ps):
1202  """set_particles(SaveOptimizerState self, IMP::Particles const & ps)"""
1203  return _IMP_rmf.SaveOptimizerState_set_particles(self, ps)
1204 
1205 
1206  def set_particles_order(self, objs):
1207  """set_particles_order(SaveOptimizerState self, IMP::Particles const & objs)"""
1208  return _IMP_rmf.SaveOptimizerState_set_particles_order(self, objs)
1209 
1210 
1211  def add_particle(self, obj):
1212  """add_particle(SaveOptimizerState self, Particle obj) -> unsigned int"""
1213  return _IMP_rmf.SaveOptimizerState_add_particle(self, obj)
1214 
1215 
1216  def add_particles(self, objs):
1217  """add_particles(SaveOptimizerState self, IMP::Particles const & objs)"""
1218  return _IMP_rmf.SaveOptimizerState_add_particles(self, objs)
1219 
1220 
1221  def clear_particles(self):
1222  """clear_particles(SaveOptimizerState self)"""
1223  return _IMP_rmf.SaveOptimizerState_clear_particles(self)
1224 
1225 
1226  def get_number_of_particles(self):
1227  """get_number_of_particles(SaveOptimizerState self) -> unsigned int"""
1228  return _IMP_rmf.SaveOptimizerState_get_number_of_particles(self)
1229 
1230 
1231  def get_has_particles(self):
1232  """get_has_particles(SaveOptimizerState self) -> bool"""
1233  return _IMP_rmf.SaveOptimizerState_get_has_particles(self)
1234 
1235 
1236  def get_particle(self, i):
1237  """get_particle(SaveOptimizerState self, unsigned int i) -> Particle"""
1238  return _IMP_rmf.SaveOptimizerState_get_particle(self, i)
1239 
1240 
1241  def get_particles(self):
1242  """get_particles(SaveOptimizerState self) -> IMP::Particles"""
1243  return _IMP_rmf.SaveOptimizerState_get_particles(self)
1244 
1245 
1246  def reserve_particles(self, sz):
1247  """reserve_particles(SaveOptimizerState self, unsigned int sz)"""
1248  return _IMP_rmf.SaveOptimizerState_reserve_particles(self, sz)
1249 
1250 
1251  def remove_geometry(self, d):
1252  """remove_geometry(SaveOptimizerState self, Geometry d)"""
1253  return _IMP_rmf.SaveOptimizerState_remove_geometry(self, d)
1254 
1255 
1256  def remove_geometries(self, d):
1257  """remove_geometries(SaveOptimizerState self, IMP::display::Geometries const & d)"""
1258  return _IMP_rmf.SaveOptimizerState_remove_geometries(self, d)
1259 
1260 
1261  def set_geometries(self, ps):
1262  """set_geometries(SaveOptimizerState self, IMP::display::Geometries const & ps)"""
1263  return _IMP_rmf.SaveOptimizerState_set_geometries(self, ps)
1264 
1265 
1266  def set_geometries_order(self, objs):
1267  """set_geometries_order(SaveOptimizerState self, IMP::display::Geometries const & objs)"""
1268  return _IMP_rmf.SaveOptimizerState_set_geometries_order(self, objs)
1269 
1270 
1271  def add_geometry(self, obj):
1272  """add_geometry(SaveOptimizerState self, Geometry obj) -> unsigned int"""
1273  return _IMP_rmf.SaveOptimizerState_add_geometry(self, obj)
1274 
1275 
1276  def add_geometries(self, objs):
1277  """add_geometries(SaveOptimizerState self, IMP::display::Geometries const & objs)"""
1278  return _IMP_rmf.SaveOptimizerState_add_geometries(self, objs)
1279 
1280 
1281  def clear_geometries(self):
1282  """clear_geometries(SaveOptimizerState self)"""
1283  return _IMP_rmf.SaveOptimizerState_clear_geometries(self)
1284 
1285 
1286  def get_number_of_geometries(self):
1287  """get_number_of_geometries(SaveOptimizerState self) -> unsigned int"""
1288  return _IMP_rmf.SaveOptimizerState_get_number_of_geometries(self)
1289 
1290 
1291  def get_has_geometries(self):
1292  """get_has_geometries(SaveOptimizerState self) -> bool"""
1293  return _IMP_rmf.SaveOptimizerState_get_has_geometries(self)
1294 
1295 
1296  def get_geometry(self, i):
1297  """get_geometry(SaveOptimizerState self, unsigned int i) -> Geometry"""
1298  return _IMP_rmf.SaveOptimizerState_get_geometry(self, i)
1299 
1300 
1301  def get_geometries(self):
1302  """get_geometries(SaveOptimizerState self) -> IMP::display::Geometries"""
1303  return _IMP_rmf.SaveOptimizerState_get_geometries(self)
1304 
1305 
1306  def reserve_geometries(self, sz):
1307  """reserve_geometries(SaveOptimizerState self, unsigned int sz)"""
1308  return _IMP_rmf.SaveOptimizerState_reserve_geometries(self, sz)
1309 
1310 
1311  def set_simulator(self, sim):
1312  """set_simulator(SaveOptimizerState self, Simulator sim)"""
1313  return _IMP_rmf.SaveOptimizerState_set_simulator(self, sim)
1314 
1315 
1316  def update_always(self, *args):
1317  """
1318  update_always(SaveOptimizerState self, std::string name)
1319  update_always(SaveOptimizerState self)
1320  """
1321  return _IMP_rmf.SaveOptimizerState_update_always(self, *args)
1322 
1323 
1324  def do_update(self, call_num):
1325  """do_update(SaveOptimizerState self, unsigned int call_num)"""
1326  return _IMP_rmf.SaveOptimizerState_do_update(self, call_num)
1327 
1328 
1329  def get_version_info(self):
1330  """get_version_info(SaveOptimizerState self) -> VersionInfo"""
1331  return _IMP_rmf.SaveOptimizerState_get_version_info(self)
1332 
1333 
1334  def __str__(self):
1335  """__str__(SaveOptimizerState self) -> std::string"""
1336  return _IMP_rmf.SaveOptimizerState___str__(self)
1337 
1338 
1339  def __repr__(self):
1340  """__repr__(SaveOptimizerState self) -> std::string"""
1341  return _IMP_rmf.SaveOptimizerState___repr__(self)
1342 
1343 
1344  @staticmethod
1345  def get_from(o):
1346  return _object_cast_to_SaveOptimizerState(o)
1347 
1348 SaveOptimizerState_swigregister = _IMP_rmf.SaveOptimizerState_swigregister
1349 SaveOptimizerState_swigregister(SaveOptimizerState)
1350 
1351 
1352 def load_frame(file, frame):
1353  """load_frame(FileConstHandle file, FrameID frame)"""
1354  return _IMP_rmf.load_frame(file, frame)
1355 
1356 def save_frame(*args):
1357  """
1358  save_frame(FileHandle file, std::string name) -> FrameID
1359  save_frame(FileHandle file) -> FrameID
1360  """
1361  return _IMP_rmf.save_frame(*args)
1362 class _ParticleSaveLink(SaveLink):
1363  """Proxy of C++ IMP::rmf::SimpleSaveLink<(IMP::Particle)> class"""
1364  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1365 
1366  def __init__(self, *args, **kwargs):
1367  raise AttributeError("No constructor defined - class is abstract")
1368  __repr__ = _swig_repr
1369 
1370  def add(self, parent, os):
1371  """add(_ParticleSaveLink self, NodeHandle parent, IMP::Vector< Pointer< IMP::Particle > > const & os)"""
1372  return _IMP_rmf._ParticleSaveLink_add(self, parent, os)
1373 
1374  __swig_destroy__ = _IMP_rmf.delete__ParticleSaveLink
1375  __del__ = lambda self: None
1376 _ParticleSaveLink_swigregister = _IMP_rmf._ParticleSaveLink_swigregister
1377 _ParticleSaveLink_swigregister(_ParticleSaveLink)
1378 
1379 class _ParticleLoadLink(LoadLink):
1380  """Proxy of C++ IMP::rmf::SimpleLoadLink<(IMP::Particle)> class"""
1381  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1382 
1383  def __init__(self, *args, **kwargs):
1384  raise AttributeError("No constructor defined - class is abstract")
1385  __repr__ = _swig_repr
1386 
1387  def create(self, *args):
1388  """
1389  create(_ParticleLoadLink self, NodeConstHandle rt) -> IMP::Vector< Pointer< IMP::Particle > >
1390  create(_ParticleLoadLink self, NodeConstHandle rt, Model m) -> IMP::Vector< Pointer< IMP::Particle > >
1391  """
1392  return _IMP_rmf._ParticleLoadLink_create(self, *args)
1393 
1394 
1395  def link(self, rt, ps):
1396  """link(_ParticleLoadLink self, NodeConstHandle rt, IMP::Vector< Pointer< IMP::Particle > > const & ps)"""
1397  return _IMP_rmf._ParticleLoadLink_link(self, rt, ps)
1398 
1399  __swig_destroy__ = _IMP_rmf.delete__ParticleLoadLink
1400  __del__ = lambda self: None
1401 _ParticleLoadLink_swigregister = _IMP_rmf._ParticleLoadLink_swigregister
1402 _ParticleLoadLink_swigregister(_ParticleLoadLink)
1403 
1404 class HierarchyLoadLink(_ParticleLoadLink):
1405  """Proxy of C++ IMP::rmf::HierarchyLoadLink class"""
1406  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1407 
1408  def __init__(self, fh):
1409  """__init__(IMP::rmf::HierarchyLoadLink self, FileConstHandle fh) -> HierarchyLoadLink"""
1410  this = _IMP_rmf.new_HierarchyLoadLink(fh)
1411  try:
1412  self.this.append(this)
1413  except:
1414  self.this = this
1415 
1416  def get_name():
1417  """get_name() -> char const *"""
1418  return _IMP_rmf.HierarchyLoadLink_get_name()
1419 
1420  get_name = staticmethod(get_name)
1421 
1422  def get_version_info(self):
1423  """get_version_info(HierarchyLoadLink self) -> VersionInfo"""
1424  return _IMP_rmf.HierarchyLoadLink_get_version_info(self)
1425 
1426 
1427  def __str__(self):
1428  """__str__(HierarchyLoadLink self) -> std::string"""
1429  return _IMP_rmf.HierarchyLoadLink___str__(self)
1430 
1431 
1432  def __repr__(self):
1433  """__repr__(HierarchyLoadLink self) -> std::string"""
1434  return _IMP_rmf.HierarchyLoadLink___repr__(self)
1435 
1436 
1437  @staticmethod
1438  def get_from(o):
1439  return _object_cast_to_HierarchyLoadLink(o)
1440 
1441 HierarchyLoadLink_swigregister = _IMP_rmf.HierarchyLoadLink_swigregister
1442 HierarchyLoadLink_swigregister(HierarchyLoadLink)
1443 
1444 def HierarchyLoadLink_get_name():
1445  """HierarchyLoadLink_get_name() -> char const *"""
1446  return _IMP_rmf.HierarchyLoadLink_get_name()
1447 
1448 class HierarchySaveLink(_ParticleSaveLink):
1449  """Proxy of C++ IMP::rmf::HierarchySaveLink class"""
1450  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1451 
1452  def __init__(self, fh):
1453  """__init__(IMP::rmf::HierarchySaveLink self, FileHandle fh) -> HierarchySaveLink"""
1454  this = _IMP_rmf.new_HierarchySaveLink(fh)
1455  try:
1456  self.this.append(this)
1457  except:
1458  self.this = this
1459 
1460  def get_name():
1461  """get_name() -> char const *"""
1462  return _IMP_rmf.HierarchySaveLink_get_name()
1463 
1464  get_name = staticmethod(get_name)
1465 
1466  def get_version_info(self):
1467  """get_version_info(HierarchySaveLink self) -> VersionInfo"""
1468  return _IMP_rmf.HierarchySaveLink_get_version_info(self)
1469 
1470 
1471  def __str__(self):
1472  """__str__(HierarchySaveLink self) -> std::string"""
1473  return _IMP_rmf.HierarchySaveLink___str__(self)
1474 
1475 
1476  def __repr__(self):
1477  """__repr__(HierarchySaveLink self) -> std::string"""
1478  return _IMP_rmf.HierarchySaveLink___repr__(self)
1479 
1480 
1481  @staticmethod
1482  def get_from(o):
1483  return _object_cast_to_HierarchySaveLink(o)
1484 
1485 HierarchySaveLink_swigregister = _IMP_rmf.HierarchySaveLink_swigregister
1486 HierarchySaveLink_swigregister(HierarchySaveLink)
1487 
1488 def HierarchySaveLink_get_name():
1489  """HierarchySaveLink_get_name() -> char const *"""
1490  return _IMP_rmf.HierarchySaveLink_get_name()
1491 
1492 
1493 suffixes = [".rmf", ".rmfz"]
1494 
1495 
1496 def get_module_version():
1497  """get_module_version() -> std::string const"""
1498  return _IMP_rmf.get_module_version()
1499 
1500 def get_example_path(fname):
1501  """get_example_path(std::string fname) -> std::string"""
1502  return _IMP_rmf.get_example_path(fname)
1503 
1504 def get_data_path(fname):
1505  """get_data_path(std::string fname) -> std::string"""
1506  return _IMP_rmf.get_data_path(fname)
1507 
1508 from . import _version_check
1509 _version_check.check_version(get_module_version())
1510 __version__ = get_module_version()
1511 
1512 
1513 
IMP::rmf::link_particles
void link_particles(RMF::FileConstHandle fh, const ParticlesTemp &hs)
IMP::rmf::create_geometries
display::Geometries create_geometries(RMF::FileConstHandle parent)
Create geometry objects for the geometry nodes found in the file.
IMP::rmf::create_particles
ParticlesTemp create_particles(RMF::FileConstHandle fh, Model *m)
IMP::rmf::create_hierarchies
atom::Hierarchies create_hierarchies(RMF::FileConstHandle fh, Model *m)
IMP::rmf::save_frame
RMF::FrameID save_frame(RMF::FileHandle file, std::string name="")
Save the current state of the linked objects as a new RMF frame.
IMP::rmf::add_particles
void add_particles(RMF::FileHandle fh, const ParticlesTemp &hs)
IMP::container
Various classes to hold sets of particles.
IMP::rmf::add_restraints_as_bonds
void add_restraints_as_bonds(RMF::FileHandle fh, const Restraints &rs)
Add a list of restraints to the file as (static) bonds.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::rmf::link_restraints
void link_restraints(RMF::FileConstHandle fh, const Restraints &hs)
IMP::rmf::add_particle
void add_particle(RMF::FileHandle fh, Particle *hs)
IMP::rmf::add_hierarchies
void add_hierarchies(RMF::FileHandle fh, const atom::Hierarchies &hs)
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::pmi1::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::rmf::add_restraint
void add_restraint(RMF::FileHandle fh, Restraint *hs)
IMP::rmf::add_hierarchy
void add_hierarchy(RMF::FileHandle fh, atom::Hierarchy hs)
IMP::pmi1::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::rmf::add_restraints
void add_restraints(RMF::FileHandle fh, const Restraints &hs)
IMP::rmf::link_geometries
void link_geometries(RMF::FileConstHandle parent, const display::GeometriesTemp &r)
Link the passed geometry objects to corresponding ones in the file.
IMP::VersionInfo
Version and module information for Objects.
Definition: VersionInfo.h:28
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::rmf::load_frame
void load_frame(RMF::FileConstHandle file, RMF::FrameID frame)
Load the given RMF frame into the state of the linked objects.
IMP::Decorator::get_particle
Particle * get_particle() const
Returns the particle decorated by this decorator.
Definition: Decorator.h:171
IMP::rmf::set_maximum_number_of_terms
void set_maximum_number_of_terms(RMF::FileHandle fh, unsigned int num)
Limit the number of restraint terms.
IMP::pmi1::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::rmf::create_restraints
Restraints create_restraints(RMF::FileConstHandle fh, Model *m)
IMP::OptimizerState
Shared optimizer state that is invoked upon commitment of new coordinates.
Definition: OptimizerState.h:43
IMP::rmf::link_hierarchies
void link_hierarchies(RMF::FileConstHandle fh, const atom::Hierarchies &hs)
IMP::rmf::add_geometry
void add_geometry(RMF::FileHandle file, display::Geometry *r)
Add a single geometry to the file.
IMP::rmf::add_static_geometries
void add_static_geometries(RMF::FileHandle parent, const display::GeometriesTemp &r)
Add geometries, assuming they do not move between frames.
IMP::rmf::add_geometries
void add_geometries(RMF::FileHandle file, const display::GeometriesTemp &r)
Add geometries to the file.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...