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IMP Reference Guide  2.16.0
The Integrative Modeling Platform
version 2.16.0
multifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_multifit', [dirname(__file__)])
23  except ImportError:
24  import _IMP_multifit
25  return _IMP_multifit
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_multifit', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_multifit = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_multifit
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_MULTIFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_MULTIFIT_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_multifit.delete_IMP_MULTIFIT_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
125  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
131  incr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
132  """
133  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
139  decr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
140  """
141  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
151  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator"""
156  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
161  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
166  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
171  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
176  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
181  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
186  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
191  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
196  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
201  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator
207  __sub__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_MULTIFIT_SwigPyIterator_swigregister = _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_swigregister
214 IMP_MULTIFIT_SwigPyIterator_swigregister(IMP_MULTIFIT_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_multifit.IMP_DEBUG_swigconstant(_IMP_multifit)
224 IMP_DEBUG = _IMP_multifit.IMP_DEBUG
225 
226 _IMP_multifit.IMP_RELEASE_swigconstant(_IMP_multifit)
227 IMP_RELEASE = _IMP_multifit.IMP_RELEASE
228 
229 _IMP_multifit.IMP_SILENT_swigconstant(_IMP_multifit)
230 IMP_SILENT = _IMP_multifit.IMP_SILENT
231 
232 _IMP_multifit.IMP_PROGRESS_swigconstant(_IMP_multifit)
233 IMP_PROGRESS = _IMP_multifit.IMP_PROGRESS
234 
235 _IMP_multifit.IMP_TERSE_swigconstant(_IMP_multifit)
236 IMP_TERSE = _IMP_multifit.IMP_TERSE
237 
238 _IMP_multifit.IMP_VERBOSE_swigconstant(_IMP_multifit)
239 IMP_VERBOSE = _IMP_multifit.IMP_VERBOSE
240 
241 _IMP_multifit.IMP_MEMORY_swigconstant(_IMP_multifit)
242 IMP_MEMORY = _IMP_multifit.IMP_MEMORY
243 
244 _IMP_multifit.IMP_NONE_swigconstant(_IMP_multifit)
245 IMP_NONE = _IMP_multifit.IMP_NONE
246 
247 _IMP_multifit.IMP_USAGE_swigconstant(_IMP_multifit)
248 IMP_USAGE = _IMP_multifit.IMP_USAGE
249 
250 _IMP_multifit.IMP_INTERNAL_swigconstant(_IMP_multifit)
251 IMP_INTERNAL = _IMP_multifit.IMP_INTERNAL
252 
253 _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_multifit)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_multifit.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_multifit)
257 IMP_COMPILER_HAS_AUTO = _IMP_multifit.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_multifit)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_multifit)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_multifit.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_multifit.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_multifit)
269 IMP_KERNEL_HAS_NUMPY = _IMP_multifit.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_multifit)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_multifit)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_multifit)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_multifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_multifit.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_multifit._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_multifit._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_multifit)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_multifit.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_multifit.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_multifit)
329 IMP_COMPILER_HAS_FINAL = _IMP_multifit.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_multifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_multifit)
332 IMP_HAS_NOEXCEPT = _IMP_multifit.IMP_HAS_NOEXCEPT
333 
334 _IMP_multifit.IMP_C_OPEN_BINARY_swigconstant(_IMP_multifit)
335 IMP_C_OPEN_BINARY = _IMP_multifit.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
340 
341 _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM
346 
347 _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM
349 
350 _IMP_multifit.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_multifit)
351 IMP_CGAL_HAS_NUMPY = _IMP_multifit.IMP_CGAL_HAS_NUMPY
352 
353 _IMP_multifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
354 IMPCGAL_SHOW_WARNINGS = _IMP_multifit.IMPCGAL_SHOW_WARNINGS
355 import IMP.cgal
356 
357 _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL
359 
360 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
362 
363 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
365 
366 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
368 
369 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
371 
372 _IMP_multifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_multifit)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_CGAL
374 
375 _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_multifit)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY
377 
378 _IMP_multifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_multifit)
379 IMP_ALGEBRA_HAS_ANN = _IMP_multifit.IMP_ALGEBRA_HAS_ANN
380 
381 _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_multifit)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS
383 import IMP.algebra
384 
385 _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
386 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL
387 
388 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
389 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
390 
391 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
392 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
393 
394 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
395 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM
396 
397 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
398 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
399 
400 _IMP_multifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_multifit)
401 IMP_DISPLAY_HAS_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_CGAL
402 
403 _IMP_multifit.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_multifit)
404 IMP_DISPLAY_HAS_NUMPY = _IMP_multifit.IMP_DISPLAY_HAS_NUMPY
405 
406 _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_multifit)
407 IMPDISPLAY_SHOW_WARNINGS = _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS
408 import IMP.display
409 
410 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
411 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
412 
413 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
414 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
415 
416 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
417 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
418 
419 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
420 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
421 
422 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
423 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
424 
425 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_multifit)
426 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL
427 
428 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_multifit)
429 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5
430 
431 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_multifit)
432 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY
433 
434 _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_multifit)
435 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
436 import IMP.score_functor
437 
438 _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
439 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL
440 
441 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
442 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
443 
444 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
445 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
446 
447 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
448 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM
449 
450 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
451 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
452 
453 _IMP_multifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_multifit)
454 IMP_STATISTICS_HAS_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_CGAL
455 
456 _IMP_multifit.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_multifit)
457 IMP_STATISTICS_HAS_NUMPY = _IMP_multifit.IMP_STATISTICS_HAS_NUMPY
458 
459 _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
460 IMPSTATISTICS_SHOW_WARNINGS = _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS
461 import IMP.statistics
462 
463 _IMP_multifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
464 IMP_CORE_HAS_IMP_CGAL = _IMP_multifit.IMP_CORE_HAS_IMP_CGAL
465 
466 _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
467 IMP_CORE_HAS_IMP_KERNEL = _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL
468 
469 _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
470 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM
471 
472 _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
473 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
474 
475 _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
476 IMP_CORE_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM
477 
478 _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
479 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM
480 
481 _IMP_multifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_multifit)
482 IMP_CORE_HAS_CGAL = _IMP_multifit.IMP_CORE_HAS_CGAL
483 
484 _IMP_multifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_multifit)
485 IMP_CORE_HAS_HDF5 = _IMP_multifit.IMP_CORE_HAS_HDF5
486 
487 _IMP_multifit.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_multifit)
488 IMP_CORE_HAS_NUMPY = _IMP_multifit.IMP_CORE_HAS_NUMPY
489 
490 _IMP_multifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_multifit)
491 IMPCORE_SHOW_WARNINGS = _IMP_multifit.IMPCORE_SHOW_WARNINGS
492 import IMP.core
493 
494 _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_multifit)
495 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
496 
497 _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
498 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL
499 
500 _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
501 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY
502 
503 _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
504 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL
505 
506 _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
507 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
508 
509 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
510 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
511 
512 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
513 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
514 
515 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
516 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM
517 
518 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
519 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
520 
521 _IMP_multifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_multifit)
522 IMP_CONTAINER_HAS_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_CGAL
523 
524 _IMP_multifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_multifit)
525 IMP_CONTAINER_HAS_HDF5 = _IMP_multifit.IMP_CONTAINER_HAS_HDF5
526 
527 _IMP_multifit.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_multifit)
528 IMP_CONTAINER_HAS_NUMPY = _IMP_multifit.IMP_CONTAINER_HAS_NUMPY
529 
530 _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
531 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM
532 
533 _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_multifit)
534 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
535 
536 _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_multifit)
537 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP
538 
539 _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_multifit)
540 IMPCONTAINER_SHOW_WARNINGS = _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS
541 import IMP.container
542 
543 _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
544 IMP_ATOM_HAS_IMP_CGAL = _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL
545 
546 _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
547 IMP_ATOM_HAS_IMP_KERNEL = _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL
548 
549 _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
550 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
551 
552 _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
553 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
554 
555 _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
556 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM
557 
558 _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
559 IMP_ATOM_HAS_BOOST_REGEX = _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX
560 
561 _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
562 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM
563 
564 _IMP_multifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_multifit)
565 IMP_ATOM_HAS_CGAL = _IMP_multifit.IMP_ATOM_HAS_CGAL
566 
567 _IMP_multifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_multifit)
568 IMP_ATOM_HAS_HDF5 = _IMP_multifit.IMP_ATOM_HAS_HDF5
569 
570 _IMP_multifit.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_multifit)
571 IMP_ATOM_HAS_NUMPY = _IMP_multifit.IMP_ATOM_HAS_NUMPY
572 
573 _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
574 IMP_ATOM_HAS_PYTHON_IHM = _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM
575 
576 _IMP_multifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
577 IMPATOM_SHOW_WARNINGS = _IMP_multifit.IMPATOM_SHOW_WARNINGS
578 
579 _IMP_multifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_multifit)
580 IMP_ATOM_TYPE_INDEX = _IMP_multifit.IMP_ATOM_TYPE_INDEX
581 
582 _IMP_multifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_multifit)
583 IMP_RESIDUE_TYPE_INDEX = _IMP_multifit.IMP_RESIDUE_TYPE_INDEX
584 
585 _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_multifit)
586 IMP_HIERARCHY_TYPE_INDEX = _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX
587 
588 _IMP_multifit.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_multifit)
589 IMP_CHAIN_TYPE_INDEX = _IMP_multifit.IMP_CHAIN_TYPE_INDEX
590 import IMP.atom
591 
592 _IMP_multifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
593 IMP_EM_HAS_IMP_CGAL = _IMP_multifit.IMP_EM_HAS_IMP_CGAL
594 
595 _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
596 IMP_EM_HAS_IMP_CONTAINER = _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER
597 
598 _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
599 IMP_EM_HAS_IMP_DISPLAY = _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY
600 
601 _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
602 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
603 
604 _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
605 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM
606 
607 _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
608 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
609 
610 _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
611 IMP_EM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM
612 
613 _IMP_multifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
614 IMP_EM_HAS_BOOST_REGEX = _IMP_multifit.IMP_EM_HAS_BOOST_REGEX
615 
616 _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
617 IMP_EM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM
618 
619 _IMP_multifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_multifit)
620 IMP_EM_HAS_CGAL = _IMP_multifit.IMP_EM_HAS_CGAL
621 
622 _IMP_multifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_multifit)
623 IMP_EM_HAS_HDF5 = _IMP_multifit.IMP_EM_HAS_HDF5
624 
625 _IMP_multifit.IMP_EM_HAS_NUMPY_swigconstant(_IMP_multifit)
626 IMP_EM_HAS_NUMPY = _IMP_multifit.IMP_EM_HAS_NUMPY
627 
628 _IMP_multifit.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
629 IMP_EM_HAS_PYTHON_IHM = _IMP_multifit.IMP_EM_HAS_PYTHON_IHM
630 
631 _IMP_multifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
632 IMPEM_SHOW_WARNINGS = _IMP_multifit.IMPEM_SHOW_WARNINGS
633 import IMP.em
634 
635 _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
636 IMP_SAXS_HAS_IMP_CGAL = _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL
637 
638 _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
639 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER
640 
641 _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
642 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY
643 
644 _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
645 IMP_SAXS_HAS_IMP_KERNEL = _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL
646 
647 _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
648 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
649 
650 _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
651 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM
652 
653 _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
654 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
655 
656 _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
657 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM
658 
659 _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
660 IMP_SAXS_HAS_BOOST_REGEX = _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX
661 
662 _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
663 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM
664 
665 _IMP_multifit.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_multifit)
666 IMP_SAXS_HAS_CGAL = _IMP_multifit.IMP_SAXS_HAS_CGAL
667 
668 _IMP_multifit.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_multifit)
669 IMP_SAXS_HAS_HDF5 = _IMP_multifit.IMP_SAXS_HAS_HDF5
670 
671 _IMP_multifit.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_multifit)
672 IMP_SAXS_HAS_NUMPY = _IMP_multifit.IMP_SAXS_HAS_NUMPY
673 
674 _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
675 IMP_SAXS_HAS_PYTHON_IHM = _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM
676 
677 _IMP_multifit.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
678 IMPSAXS_SHOW_WARNINGS = _IMP_multifit.IMPSAXS_SHOW_WARNINGS
679 import IMP.saxs
680 
681 _IMP_multifit.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
682 IMP_ISD_HAS_IMP_CGAL = _IMP_multifit.IMP_ISD_HAS_IMP_CGAL
683 
684 _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
685 IMP_ISD_HAS_IMP_DISPLAY = _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY
686 
687 _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
688 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
689 
690 _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
691 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM
692 
693 _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
694 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
695 
696 _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
697 IMP_ISD_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM
698 
699 _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
700 IMP_ISD_HAS_BOOST_REGEX = _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX
701 
702 _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
703 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM
704 
705 _IMP_multifit.IMP_ISD_HAS_CGAL_swigconstant(_IMP_multifit)
706 IMP_ISD_HAS_CGAL = _IMP_multifit.IMP_ISD_HAS_CGAL
707 
708 _IMP_multifit.IMP_ISD_HAS_HDF5_swigconstant(_IMP_multifit)
709 IMP_ISD_HAS_HDF5 = _IMP_multifit.IMP_ISD_HAS_HDF5
710 
711 _IMP_multifit.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_multifit)
712 IMP_ISD_HAS_NUMPY = _IMP_multifit.IMP_ISD_HAS_NUMPY
713 
714 _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
715 IMP_ISD_HAS_PYTHON_IHM = _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM
716 
717 _IMP_multifit.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_multifit)
718 IMPISD_SHOW_WARNINGS = _IMP_multifit.IMPISD_SHOW_WARNINGS
719 import IMP.isd
720 
721 _IMP_multifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
722 IMP_RMF_HAS_IMP_CGAL = _IMP_multifit.IMP_RMF_HAS_IMP_CGAL
723 
724 _IMP_multifit.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_multifit)
725 IMP_RMF_HAS_IMP_EM = _IMP_multifit.IMP_RMF_HAS_IMP_EM
726 
727 _IMP_multifit.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
728 IMP_RMF_HAS_IMP_SAXS = _IMP_multifit.IMP_RMF_HAS_IMP_SAXS
729 
730 _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
731 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
732 
733 _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_multifit)
734 IMP_RMF_HAS_IMP_STATISTICS = _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS
735 
736 _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
737 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM
738 
739 _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
740 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
741 
742 _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
743 IMP_RMF_HAS_BOOST_RANDOM = _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM
744 
745 _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
746 IMP_RMF_HAS_BOOST_REGEX = _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX
747 
748 _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
749 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM
750 
751 _IMP_multifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_multifit)
752 IMP_RMF_HAS_CGAL = _IMP_multifit.IMP_RMF_HAS_CGAL
753 
754 _IMP_multifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_multifit)
755 IMP_RMF_HAS_HDF5 = _IMP_multifit.IMP_RMF_HAS_HDF5
756 
757 _IMP_multifit.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_multifit)
758 IMP_RMF_HAS_NUMPY = _IMP_multifit.IMP_RMF_HAS_NUMPY
759 
760 _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
761 IMP_RMF_HAS_PYTHON_IHM = _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM
762 
763 _IMP_multifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_multifit)
764 IMPRMF_SHOW_WARNINGS = _IMP_multifit.IMPRMF_SHOW_WARNINGS
765 import IMP.rmf
766 import RMF
767 
768 _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_multifit)
769 IMP_DOMINO_HAS_IMP_ATOM = _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM
770 
771 _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
772 IMP_DOMINO_HAS_IMP_CGAL = _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL
773 
774 _IMP_multifit.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_multifit)
775 IMP_DOMINO_HAS_IMP_EM = _IMP_multifit.IMP_DOMINO_HAS_IMP_EM
776 
777 _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_multifit)
778 IMP_DOMINO_HAS_IMP_ISD = _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD
779 
780 _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
781 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL
782 
783 _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_multifit)
784 IMP_DOMINO_HAS_IMP_RMF = _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF
785 
786 _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
787 IMP_DOMINO_HAS_IMP_SAXS = _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS
788 
789 _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
790 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
791 
792 _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
793 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
794 
795 _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
796 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
797 
798 _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
799 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM
800 
801 _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
802 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX
803 
804 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
805 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM
806 
807 _IMP_multifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_multifit)
808 IMP_DOMINO_HAS_CGAL = _IMP_multifit.IMP_DOMINO_HAS_CGAL
809 
810 _IMP_multifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_multifit)
811 IMP_DOMINO_HAS_HDF5 = _IMP_multifit.IMP_DOMINO_HAS_HDF5
812 
813 _IMP_multifit.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_multifit)
814 IMP_DOMINO_HAS_NUMPY = _IMP_multifit.IMP_DOMINO_HAS_NUMPY
815 
816 _IMP_multifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_multifit)
817 IMP_DOMINO_HAS_RMF = _IMP_multifit.IMP_DOMINO_HAS_RMF
818 
819 _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
820 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM
821 
822 _IMP_multifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_multifit)
823 IMPDOMINO_SHOW_WARNINGS = _IMP_multifit.IMPDOMINO_SHOW_WARNINGS
824 import RMF_HDF5
825 import IMP.domino
826 
827 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
828 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL
829 
830 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
831 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
832 
833 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
834 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
835 
836 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD_swigconstant(_IMP_multifit)
837 IMP_MULTIFIT_HAS_IMP_ISD = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD
838 
839 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
840 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL
841 
842 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_multifit)
843 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF
844 
845 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
846 IMP_MULTIFIT_HAS_IMP_SAXS = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS
847 
848 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
849 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
850 
851 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_multifit)
852 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
853 
854 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
855 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
856 
857 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
858 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX
859 
860 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
861 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
862 
863 _IMP_multifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_multifit)
864 IMP_MULTIFIT_HAS_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_CGAL
865 
866 _IMP_multifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_multifit)
867 IMP_MULTIFIT_HAS_HDF5 = _IMP_multifit.IMP_MULTIFIT_HAS_HDF5
868 
869 _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY_swigconstant(_IMP_multifit)
870 IMP_MULTIFIT_HAS_NUMPY = _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY
871 
872 _IMP_multifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_multifit)
873 IMP_MULTIFIT_HAS_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_RMF
874 
875 _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
876 IMP_MULTIFIT_HAS_PYTHON_IHM = _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM
877 
878 _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_multifit)
879 IMPMULTIFIT_SHOW_WARNINGS = _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS
880 
881 _object_types.append("RadiusOfGyrationRestraint")
882 
883 
884 def _object_cast_to_RadiusOfGyrationRestraint(o):
885  """_object_cast_to_RadiusOfGyrationRestraint(Object o) -> RadiusOfGyrationRestraint"""
886  return _IMP_multifit._object_cast_to_RadiusOfGyrationRestraint(o)
887 
888 _object_types.append("ComponentHeader")
889 
890 
891 def _object_cast_to_ComponentHeader(o):
892  """_object_cast_to_ComponentHeader(Object o) -> ComponentHeader"""
893  return _IMP_multifit._object_cast_to_ComponentHeader(o)
894 
895 _object_types.append("AssemblyHeader")
896 
897 
898 def _object_cast_to_AssemblyHeader(o):
899  """_object_cast_to_AssemblyHeader(Object o) -> AssemblyHeader"""
900  return _IMP_multifit._object_cast_to_AssemblyHeader(o)
901 
902 _object_types.append("SettingsData")
903 
904 
905 def _object_cast_to_SettingsData(o):
906  """_object_cast_to_SettingsData(Object o) -> SettingsData"""
907  return _IMP_multifit._object_cast_to_SettingsData(o)
908 
909 _object_types.append("WeightedExcludedVolumeRestraint")
910 
911 
912 def _object_cast_to_WeightedExcludedVolumeRestraint(o):
913  """_object_cast_to_WeightedExcludedVolumeRestraint(Object o) -> WeightedExcludedVolumeRestraint"""
914  return _IMP_multifit._object_cast_to_WeightedExcludedVolumeRestraint(o)
915 
916 _object_types.append("ComplementarityRestraint")
917 
918 
919 def _object_cast_to_ComplementarityRestraint(o):
920  """_object_cast_to_ComplementarityRestraint(Object o) -> ComplementarityRestraint"""
921  return _IMP_multifit._object_cast_to_ComplementarityRestraint(o)
922 
923 ProteinRecordDataList=list
924 _plural_types.append("ProteinRecordDataList")
925 _value_types.append("ProteinRecordData")
926 
927 
928 FittingSolutionRecords=list
929 _plural_types.append("FittingSolutionRecords")
930 _value_types.append("FittingSolutionRecord")
931 
932 
933 AnchorsDataList=list
934 _plural_types.append("AnchorsDataList")
935 _value_types.append("AnchorsData")
936 
937 
938 DominoParamsList=list
939 _plural_types.append("DominoParamsList")
940 _value_types.append("DominoParams")
941 
942 
943 ComplementarityParamsList=list
944 _plural_types.append("ComplementarityParamsList")
945 _value_types.append("ComplementarityParams")
946 
947 
948 XlinkParamsList=list
949 _plural_types.append("XlinkParamsList")
950 _value_types.append("XlinkParams")
951 
952 
953 ConnectivityParamsList=list
954 _plural_types.append("ConnectivityParamsList")
955 _value_types.append("ConnectivityParams")
956 
957 
958 FragmentsParamsList=list
959 _plural_types.append("FragmentsParamsList")
960 _value_types.append("FragmentsParams")
961 
962 
963 RogParamsList=list
964 _plural_types.append("RogParamsList")
965 _value_types.append("RogParams")
966 
967 
968 EVParamsList=list
969 _plural_types.append("EVParamsList")
970 _value_types.append("EVParams")
971 
972 
973 FiltersParamsList=list
974 _plural_types.append("FiltersParamsList")
975 _value_types.append("FiltersParams")
976 
977 
978 AlignmentParamsList=list
979 _plural_types.append("AlignmentParamsList")
980 _value_types.append("AlignmentParams")
981 
982 
983 FittingParamsList=list
984 _plural_types.append("FittingParamsList")
985 _value_types.append("FittingParams")
986 
987 
988 ProteinsAnchorsSamplingSpaces=list
989 _plural_types.append("ProteinsAnchorsSamplingSpaces")
990 _value_types.append("ProteinsAnchorsSamplingSpace")
991 
992 
993 _object_types.append("ProteomicsData")
994 
995 
996 def _object_cast_to_ProteomicsData(o):
997  """_object_cast_to_ProteomicsData(Object o) -> ProteomicsData"""
998  return _IMP_multifit._object_cast_to_ProteomicsData(o)
999 
1000 _object_types.append("FFTFitting")
1001 
1002 
1003 def _object_cast_to_FFTFitting(o):
1004  """_object_cast_to_FFTFitting(Object o) -> FFTFitting"""
1005  return _IMP_multifit._object_cast_to_FFTFitting(o)
1006 
1007 _object_types.append("FFTFittingOutput")
1008 
1009 
1010 def _object_cast_to_FFTFittingOutput(o):
1011  """_object_cast_to_FFTFittingOutput(Object o) -> FFTFittingOutput"""
1012  return _IMP_multifit._object_cast_to_FFTFittingOutput(o)
1013 
1014 _object_types.append("ProbabilisticAnchorGraph")
1015 
1016 
1017 def _object_cast_to_ProbabilisticAnchorGraph(o):
1018  """_object_cast_to_ProbabilisticAnchorGraph(Object o) -> ProbabilisticAnchorGraph"""
1019  return _IMP_multifit._object_cast_to_ProbabilisticAnchorGraph(o)
1020 
1021 _object_types.append("Ensemble")
1022 
1023 
1024 def _object_cast_to_Ensemble(o):
1025  """_object_cast_to_Ensemble(Object o) -> Ensemble"""
1026  return _IMP_multifit._object_cast_to_Ensemble(o)
1027 
1028 _object_types.append("ProteomicsEMAlignmentAtomic")
1029 
1030 
1031 def _object_cast_to_ProteomicsEMAlignmentAtomic(o):
1032  """_object_cast_to_ProteomicsEMAlignmentAtomic(Object o) -> ProteomicsEMAlignmentAtomic"""
1033  return _IMP_multifit._object_cast_to_ProteomicsEMAlignmentAtomic(o)
1034 
1035 _object_types.append("RigidLeavesRefiner")
1036 
1037 
1038 def _object_cast_to_RigidLeavesRefiner(o):
1039  """_object_cast_to_RigidLeavesRefiner(Object o) -> RigidLeavesRefiner"""
1040  return _IMP_multifit._object_cast_to_RigidLeavesRefiner(o)
1041 
1042 def add_surface_index(*args):
1043  """
1044  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key, FloatKey weight_key)
1045  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key)
1046  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key)
1047  add_surface_index(Hierarchy mhd, IMP::Float apix)
1048  """
1049  return _IMP_multifit.add_surface_index(*args)
1050 
1051 def create_weighted_excluded_volume_restraint(*args):
1052  """
1053  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2, FloatKey shell_key) -> Restraint
1054  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2) -> Restraint
1055  """
1056  return _IMP_multifit.create_weighted_excluded_volume_restraint(*args)
1057 class FittingSolutionRecord(object):
1058  """Proxy of C++ IMP::multifit::FittingSolutionRecord class"""
1059  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1060 
1061  def __init__(self):
1062  """__init__(IMP::multifit::FittingSolutionRecord self) -> FittingSolutionRecord"""
1063  this = _IMP_multifit.new_FittingSolutionRecord()
1064  try:
1065  self.this.append(this)
1066  except:
1067  self.this = this
1068 
1069  def get_index(self):
1070  """get_index(FittingSolutionRecord self) -> unsigned int"""
1071  return _IMP_multifit.FittingSolutionRecord_get_index(self)
1072 
1073 
1074  def set_index(self, new_ind):
1075  """set_index(FittingSolutionRecord self, unsigned int new_ind)"""
1076  return _IMP_multifit.FittingSolutionRecord_set_index(self, new_ind)
1077 
1078 
1079  def get_solution_filename(self):
1080  """get_solution_filename(FittingSolutionRecord self) -> std::string"""
1081  return _IMP_multifit.FittingSolutionRecord_get_solution_filename(self)
1082 
1083 
1084  def set_solution_filename(self, sol_fn):
1085  """set_solution_filename(FittingSolutionRecord self, std::string sol_fn)"""
1086  return _IMP_multifit.FittingSolutionRecord_set_solution_filename(self, sol_fn)
1087 
1088 
1089  def get_fit_transformation(self):
1090  """get_fit_transformation(FittingSolutionRecord self) -> Transformation3D"""
1091  return _IMP_multifit.FittingSolutionRecord_get_fit_transformation(self)
1092 
1093 
1094  def set_fit_transformation(self, t):
1095  """set_fit_transformation(FittingSolutionRecord self, Transformation3D t)"""
1096  return _IMP_multifit.FittingSolutionRecord_set_fit_transformation(self, t)
1097 
1098 
1099  def get_match_size(self):
1100  """get_match_size(FittingSolutionRecord self) -> unsigned int"""
1101  return _IMP_multifit.FittingSolutionRecord_get_match_size(self)
1102 
1103 
1104  def set_match_size(self, match_size):
1105  """set_match_size(FittingSolutionRecord self, unsigned int match_size)"""
1106  return _IMP_multifit.FittingSolutionRecord_set_match_size(self, match_size)
1107 
1108 
1109  def get_match_average_distance(self):
1110  """get_match_average_distance(FittingSolutionRecord self) -> IMP::Float"""
1111  return _IMP_multifit.FittingSolutionRecord_get_match_average_distance(self)
1112 
1113 
1114  def set_match_average_distance(self, match_avg_dist):
1115  """set_match_average_distance(FittingSolutionRecord self, IMP::Float match_avg_dist)"""
1116  return _IMP_multifit.FittingSolutionRecord_set_match_average_distance(self, match_avg_dist)
1117 
1118 
1119  def get_fitting_score(self):
1120  """get_fitting_score(FittingSolutionRecord self) -> IMP::Float"""
1121  return _IMP_multifit.FittingSolutionRecord_get_fitting_score(self)
1122 
1123 
1124  def set_fitting_score(self, fit_score):
1125  """set_fitting_score(FittingSolutionRecord self, IMP::Float fit_score)"""
1126  return _IMP_multifit.FittingSolutionRecord_set_fitting_score(self, fit_score)
1127 
1128 
1129  def get_rmsd_to_reference(self):
1130  """get_rmsd_to_reference(FittingSolutionRecord self) -> IMP::Float"""
1131  return _IMP_multifit.FittingSolutionRecord_get_rmsd_to_reference(self)
1132 
1133 
1134  def set_rmsd_to_reference(self, rmsd_to_ref):
1135  """set_rmsd_to_reference(FittingSolutionRecord self, IMP::Float rmsd_to_ref)"""
1136  return _IMP_multifit.FittingSolutionRecord_set_rmsd_to_reference(self, rmsd_to_ref)
1137 
1138 
1139  def get_dock_transformation(self):
1140  """get_dock_transformation(FittingSolutionRecord self) -> Transformation3D"""
1141  return _IMP_multifit.FittingSolutionRecord_get_dock_transformation(self)
1142 
1143 
1144  def set_dock_transformation(self, t):
1145  """set_dock_transformation(FittingSolutionRecord self, Transformation3D t)"""
1146  return _IMP_multifit.FittingSolutionRecord_set_dock_transformation(self, t)
1147 
1148 
1149  def get_envelope_penetration_score(self):
1150  """get_envelope_penetration_score(FittingSolutionRecord self) -> IMP::Float"""
1151  return _IMP_multifit.FittingSolutionRecord_get_envelope_penetration_score(self)
1152 
1153 
1154  def set_envelope_penetration_score(self, s):
1155  """set_envelope_penetration_score(FittingSolutionRecord self, IMP::Float s)"""
1156  return _IMP_multifit.FittingSolutionRecord_set_envelope_penetration_score(self, s)
1157 
1158 
1159  def show(self, *args):
1160  """
1161  show(FittingSolutionRecord self, _ostream out)
1162  show(FittingSolutionRecord self)
1163  """
1164  return _IMP_multifit.FittingSolutionRecord_show(self, *args)
1165 
1166 
1167  def get_record_header():
1168  """get_record_header() -> std::string"""
1169  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1170 
1171  get_record_header = staticmethod(get_record_header)
1172 
1173  def __str__(self):
1174  """__str__(FittingSolutionRecord self) -> std::string"""
1175  return _IMP_multifit.FittingSolutionRecord___str__(self)
1176 
1177 
1178  def __repr__(self):
1179  """__repr__(FittingSolutionRecord self) -> std::string"""
1180  return _IMP_multifit.FittingSolutionRecord___repr__(self)
1181 
1182  __swig_destroy__ = _IMP_multifit.delete_FittingSolutionRecord
1183  __del__ = lambda self: None
1184 FittingSolutionRecord_swigregister = _IMP_multifit.FittingSolutionRecord_swigregister
1185 FittingSolutionRecord_swigregister(FittingSolutionRecord)
1186 
1187 def FittingSolutionRecord_get_record_header():
1188  """FittingSolutionRecord_get_record_header() -> std::string"""
1189  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1190 
1191 
1192 def pca_based_rigid_fitting(*args):
1193  """
1194  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1195  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1196  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1197  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1198  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1199  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1200  """
1201  return _IMP_multifit.pca_based_rigid_fitting(*args)
1202 
1203 def write_markers(pca, out):
1204  """write_markers(PrincipalComponentAnalysis3D pca, _ostream out)"""
1205  return _IMP_multifit.write_markers(pca, out)
1206 class ComponentHeader(IMP.Object):
1207  """Proxy of C++ IMP::multifit::ComponentHeader class"""
1208  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1209 
1210  def __init__(self):
1211  """__init__(IMP::multifit::ComponentHeader self) -> ComponentHeader"""
1212  this = _IMP_multifit.new_ComponentHeader()
1213  try:
1214  self.this.append(this)
1215  except:
1216  self.this = this
1217 
1218  def set_name(self, name):
1219  """set_name(ComponentHeader self, std::string const & name)"""
1220  return _IMP_multifit.ComponentHeader_set_name(self, name)
1221 
1222 
1223  def get_name(self):
1224  """get_name(ComponentHeader self) -> std::string"""
1225  return _IMP_multifit.ComponentHeader_get_name(self)
1226 
1227 
1228  def get_filename(self):
1229  """get_filename(ComponentHeader self) -> std::string"""
1230  return _IMP_multifit.ComponentHeader_get_filename(self)
1231 
1232 
1233  def set_filename(self, filename):
1234  """set_filename(ComponentHeader self, std::string const & filename)"""
1235  return _IMP_multifit.ComponentHeader_set_filename(self, filename)
1236 
1237 
1238  def get_surface_fn(self):
1239  """get_surface_fn(ComponentHeader self) -> std::string"""
1240  return _IMP_multifit.ComponentHeader_get_surface_fn(self)
1241 
1242 
1243  def set_surface_fn(self, fn):
1244  """set_surface_fn(ComponentHeader self, std::string const & fn)"""
1245  return _IMP_multifit.ComponentHeader_set_surface_fn(self, fn)
1246 
1247 
1248  def set_txt_ap_fn(self, pdb_ap_fn):
1249  """set_txt_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1250  return _IMP_multifit.ComponentHeader_set_txt_ap_fn(self, pdb_ap_fn)
1251 
1252 
1253  def get_txt_ap_fn(self):
1254  """get_txt_ap_fn(ComponentHeader self) -> std::string"""
1255  return _IMP_multifit.ComponentHeader_get_txt_ap_fn(self)
1256 
1257 
1258  def set_txt_fine_ap_fn(self, pdb_ap_fn):
1259  """set_txt_fine_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1260  return _IMP_multifit.ComponentHeader_set_txt_fine_ap_fn(self, pdb_ap_fn)
1261 
1262 
1263  def get_txt_fine_ap_fn(self):
1264  """get_txt_fine_ap_fn(ComponentHeader self) -> std::string"""
1265  return _IMP_multifit.ComponentHeader_get_txt_fine_ap_fn(self)
1266 
1267 
1268  def set_num_ap(self, num_ap):
1269  """set_num_ap(ComponentHeader self, int num_ap)"""
1270  return _IMP_multifit.ComponentHeader_set_num_ap(self, num_ap)
1271 
1272 
1273  def get_num_ap(self):
1274  """get_num_ap(ComponentHeader self) -> int"""
1275  return _IMP_multifit.ComponentHeader_get_num_ap(self)
1276 
1277 
1278  def set_num_fine_ap(self, num_ap):
1279  """set_num_fine_ap(ComponentHeader self, int num_ap)"""
1280  return _IMP_multifit.ComponentHeader_set_num_fine_ap(self, num_ap)
1281 
1282 
1283  def get_num_fine_ap(self):
1284  """get_num_fine_ap(ComponentHeader self) -> int"""
1285  return _IMP_multifit.ComponentHeader_get_num_fine_ap(self)
1286 
1287 
1288  def set_transformations_fn(self, transformations_fn):
1289  """set_transformations_fn(ComponentHeader self, std::string transformations_fn)"""
1290  return _IMP_multifit.ComponentHeader_set_transformations_fn(self, transformations_fn)
1291 
1292 
1293  def get_transformations_fn(self):
1294  """get_transformations_fn(ComponentHeader self) -> std::string"""
1295  return _IMP_multifit.ComponentHeader_get_transformations_fn(self)
1296 
1297 
1298  def set_reference_fn(self, ref_fn):
1299  """set_reference_fn(ComponentHeader self, std::string const & ref_fn)"""
1300  return _IMP_multifit.ComponentHeader_set_reference_fn(self, ref_fn)
1301 
1302 
1303  def get_reference_fn(self):
1304  """get_reference_fn(ComponentHeader self) -> std::string"""
1305  return _IMP_multifit.ComponentHeader_get_reference_fn(self)
1306 
1307 
1308  def get_version_info(self):
1309  """get_version_info(ComponentHeader self) -> VersionInfo"""
1310  return _IMP_multifit.ComponentHeader_get_version_info(self)
1311 
1312 
1313  def __str__(self):
1314  """__str__(ComponentHeader self) -> std::string"""
1315  return _IMP_multifit.ComponentHeader___str__(self)
1316 
1317 
1318  def __repr__(self):
1319  """__repr__(ComponentHeader self) -> std::string"""
1320  return _IMP_multifit.ComponentHeader___repr__(self)
1321 
1322 
1323  @staticmethod
1324  def get_from(o):
1325  return _object_cast_to_ComponentHeader(o)
1326 
1327 ComponentHeader_swigregister = _IMP_multifit.ComponentHeader_swigregister
1328 ComponentHeader_swigregister(ComponentHeader)
1329 
1330 class AssemblyHeader(IMP.Object):
1331  """Proxy of C++ IMP::multifit::AssemblyHeader class"""
1332  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1333 
1334  def __init__(self):
1335  """__init__(IMP::multifit::AssemblyHeader self) -> AssemblyHeader"""
1336  this = _IMP_multifit.new_AssemblyHeader()
1337  try:
1338  self.this.append(this)
1339  except:
1340  self.this = this
1341 
1342  def set_dens_fn(self, dens_fn):
1343  """set_dens_fn(AssemblyHeader self, std::string const & dens_fn)"""
1344  return _IMP_multifit.AssemblyHeader_set_dens_fn(self, dens_fn)
1345 
1346 
1347  def get_dens_fn(self):
1348  """get_dens_fn(AssemblyHeader self) -> std::string"""
1349  return _IMP_multifit.AssemblyHeader_get_dens_fn(self)
1350 
1351 
1352  def set_resolution(self, res):
1353  """set_resolution(AssemblyHeader self, float res)"""
1354  return _IMP_multifit.AssemblyHeader_set_resolution(self, res)
1355 
1356 
1357  def get_resolution(self):
1358  """get_resolution(AssemblyHeader self) -> float"""
1359  return _IMP_multifit.AssemblyHeader_get_resolution(self)
1360 
1361 
1362  def get_spacing(self):
1363  """get_spacing(AssemblyHeader self) -> float"""
1364  return _IMP_multifit.AssemblyHeader_get_spacing(self)
1365 
1366 
1367  def set_spacing(self, spacing):
1368  """set_spacing(AssemblyHeader self, float spacing)"""
1369  return _IMP_multifit.AssemblyHeader_set_spacing(self, spacing)
1370 
1371 
1372  def set_threshold(self, t):
1373  """set_threshold(AssemblyHeader self, float t)"""
1374  return _IMP_multifit.AssemblyHeader_set_threshold(self, t)
1375 
1376 
1377  def get_threshold(self):
1378  """get_threshold(AssemblyHeader self) -> float"""
1379  return _IMP_multifit.AssemblyHeader_get_threshold(self)
1380 
1381 
1382  def get_origin(self):
1383  """get_origin(AssemblyHeader self) -> Vector3D"""
1384  return _IMP_multifit.AssemblyHeader_get_origin(self)
1385 
1386 
1387  def set_origin(self, origin):
1388  """set_origin(AssemblyHeader self, Vector3D origin)"""
1389  return _IMP_multifit.AssemblyHeader_set_origin(self, origin)
1390 
1391 
1392  def get_coarse_ap_fn(self):
1393  """get_coarse_ap_fn(AssemblyHeader self) -> std::string"""
1394  return _IMP_multifit.AssemblyHeader_get_coarse_ap_fn(self)
1395 
1396 
1397  def set_coarse_ap_fn(self, new_fn):
1398  """set_coarse_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1399  return _IMP_multifit.AssemblyHeader_set_coarse_ap_fn(self, new_fn)
1400 
1401 
1402  def get_coarse_over_sampled_ap_fn(self):
1403  """get_coarse_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1404  return _IMP_multifit.AssemblyHeader_get_coarse_over_sampled_ap_fn(self)
1405 
1406 
1407  def set_coarse_over_sampled_ap_fn(self, new_fn):
1408  """set_coarse_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1409  return _IMP_multifit.AssemblyHeader_set_coarse_over_sampled_ap_fn(self, new_fn)
1410 
1411 
1412  def get_fine_ap_fn(self):
1413  """get_fine_ap_fn(AssemblyHeader self) -> std::string"""
1414  return _IMP_multifit.AssemblyHeader_get_fine_ap_fn(self)
1415 
1416 
1417  def set_fine_ap_fn(self, new_fn):
1418  """set_fine_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1419  return _IMP_multifit.AssemblyHeader_set_fine_ap_fn(self, new_fn)
1420 
1421 
1422  def get_fine_over_sampled_ap_fn(self):
1423  """get_fine_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1424  return _IMP_multifit.AssemblyHeader_get_fine_over_sampled_ap_fn(self)
1425 
1426 
1427  def set_fine_over_sampled_ap_fn(self, new_fn):
1428  """set_fine_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1429  return _IMP_multifit.AssemblyHeader_set_fine_over_sampled_ap_fn(self, new_fn)
1430 
1431 
1432  def get_version_info(self):
1433  """get_version_info(AssemblyHeader self) -> VersionInfo"""
1434  return _IMP_multifit.AssemblyHeader_get_version_info(self)
1435 
1436 
1437  def __str__(self):
1438  """__str__(AssemblyHeader self) -> std::string"""
1439  return _IMP_multifit.AssemblyHeader___str__(self)
1440 
1441 
1442  def __repr__(self):
1443  """__repr__(AssemblyHeader self) -> std::string"""
1444  return _IMP_multifit.AssemblyHeader___repr__(self)
1445 
1446 
1447  @staticmethod
1448  def get_from(o):
1449  return _object_cast_to_AssemblyHeader(o)
1450 
1451 AssemblyHeader_swigregister = _IMP_multifit.AssemblyHeader_swigregister
1452 AssemblyHeader_swigregister(AssemblyHeader)
1453 
1454 class SettingsData(IMP.Object):
1455  """Proxy of C++ IMP::multifit::SettingsData class"""
1456  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1457 
1458  def __init__(self):
1459  """__init__(IMP::multifit::SettingsData self) -> SettingsData"""
1460  this = _IMP_multifit.new_SettingsData()
1461  try:
1462  self.this.append(this)
1463  except:
1464  self.this = this
1465 
1466  def show_component_header_line(*args):
1467  """
1468  show_component_header_line(_ostream out)
1469  show_component_header_line()
1470  """
1471  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1472 
1473  show_component_header_line = staticmethod(show_component_header_line)
1474 
1475  def get_component_header_line():
1476  """get_component_header_line() -> std::string"""
1477  return _IMP_multifit.SettingsData_get_component_header_line()
1478 
1479  get_component_header_line = staticmethod(get_component_header_line)
1480 
1481  def show_density_header_line(*args):
1482  """
1483  show_density_header_line(_ostream out)
1484  show_density_header_line()
1485  """
1486  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1487 
1488  show_density_header_line = staticmethod(show_density_header_line)
1489 
1490  def get_density_header_line():
1491  """get_density_header_line() -> std::string"""
1492  return _IMP_multifit.SettingsData_get_density_header_line()
1493 
1494  get_density_header_line = staticmethod(get_density_header_line)
1495 
1496  def set_assembly_filename(self, fn):
1497  """set_assembly_filename(SettingsData self, std::string const & fn)"""
1498  return _IMP_multifit.SettingsData_set_assembly_filename(self, fn)
1499 
1500 
1501  def get_assembly_filename(self):
1502  """get_assembly_filename(SettingsData self) -> char const *"""
1503  return _IMP_multifit.SettingsData_get_assembly_filename(self)
1504 
1505 
1506  def set_assembly_header(self, h):
1507  """set_assembly_header(SettingsData self, AssemblyHeader h)"""
1508  return _IMP_multifit.SettingsData_set_assembly_header(self, h)
1509 
1510 
1511  def get_assembly_header(self):
1512  """get_assembly_header(SettingsData self) -> AssemblyHeader"""
1513  return _IMP_multifit.SettingsData_get_assembly_header(self)
1514 
1515 
1516  def set_data_path(self, fn):
1517  """set_data_path(SettingsData self, std::string const & fn)"""
1518  return _IMP_multifit.SettingsData_set_data_path(self, fn)
1519 
1520 
1521  def get_data_path(self):
1522  """get_data_path(SettingsData self) -> std::string"""
1523  return _IMP_multifit.SettingsData_get_data_path(self)
1524 
1525 
1526  def get_version_info(self):
1527  """get_version_info(SettingsData self) -> VersionInfo"""
1528  return _IMP_multifit.SettingsData_get_version_info(self)
1529 
1530 
1531  def remove_component_header(self, d):
1532  """remove_component_header(SettingsData self, ComponentHeader d)"""
1533  return _IMP_multifit.SettingsData_remove_component_header(self, d)
1534 
1535 
1536  def remove_component_headers(self, d):
1537  """remove_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & d)"""
1538  return _IMP_multifit.SettingsData_remove_component_headers(self, d)
1539 
1540 
1541  def set_component_headers(self, ps):
1542  """set_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & ps)"""
1543  return _IMP_multifit.SettingsData_set_component_headers(self, ps)
1544 
1545 
1546  def set_component_headers_order(self, objs):
1547  """set_component_headers_order(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1548  return _IMP_multifit.SettingsData_set_component_headers_order(self, objs)
1549 
1550 
1551  def add_component_header(self, obj):
1552  """add_component_header(SettingsData self, ComponentHeader obj) -> unsigned int"""
1553  return _IMP_multifit.SettingsData_add_component_header(self, obj)
1554 
1555 
1556  def add_component_headers(self, objs):
1557  """add_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1558  return _IMP_multifit.SettingsData_add_component_headers(self, objs)
1559 
1560 
1561  def clear_component_headers(self):
1562  """clear_component_headers(SettingsData self)"""
1563  return _IMP_multifit.SettingsData_clear_component_headers(self)
1564 
1565 
1566  def get_number_of_component_headers(self):
1567  """get_number_of_component_headers(SettingsData self) -> unsigned int"""
1568  return _IMP_multifit.SettingsData_get_number_of_component_headers(self)
1569 
1570 
1571  def get_has_component_headers(self):
1572  """get_has_component_headers(SettingsData self) -> bool"""
1573  return _IMP_multifit.SettingsData_get_has_component_headers(self)
1574 
1575 
1576  def get_component_header(self, i):
1577  """get_component_header(SettingsData self, unsigned int i) -> ComponentHeader"""
1578  return _IMP_multifit.SettingsData_get_component_header(self, i)
1579 
1580 
1581  def get_component_headers(self):
1582  """get_component_headers(SettingsData self) -> IMP::multifit::ComponentHeaders"""
1583  return _IMP_multifit.SettingsData_get_component_headers(self)
1584 
1585 
1586  def reserve_component_headers(self, sz):
1587  """reserve_component_headers(SettingsData self, unsigned int sz)"""
1588  return _IMP_multifit.SettingsData_reserve_component_headers(self, sz)
1589 
1590 
1591  def __str__(self):
1592  """__str__(SettingsData self) -> std::string"""
1593  return _IMP_multifit.SettingsData___str__(self)
1594 
1595 
1596  def __repr__(self):
1597  """__repr__(SettingsData self) -> std::string"""
1598  return _IMP_multifit.SettingsData___repr__(self)
1599 
1600 
1601  @staticmethod
1602  def get_from(o):
1603  return _object_cast_to_SettingsData(o)
1604 
1605 SettingsData_swigregister = _IMP_multifit.SettingsData_swigregister
1606 SettingsData_swigregister(SettingsData)
1607 
1608 def SettingsData_show_component_header_line(*args):
1609  """
1610  show_component_header_line(_ostream out)
1611  SettingsData_show_component_header_line()
1612  """
1613  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1614 
1615 def SettingsData_get_component_header_line():
1616  """SettingsData_get_component_header_line() -> std::string"""
1617  return _IMP_multifit.SettingsData_get_component_header_line()
1618 
1619 def SettingsData_show_density_header_line(*args):
1620  """
1621  show_density_header_line(_ostream out)
1622  SettingsData_show_density_header_line()
1623  """
1624  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1625 
1626 def SettingsData_get_density_header_line():
1627  """SettingsData_get_density_header_line() -> std::string"""
1628  return _IMP_multifit.SettingsData_get_density_header_line()
1629 
1630 
1631 def read_settings(filename):
1632  """read_settings(char const * filename) -> SettingsData"""
1633  return _IMP_multifit.read_settings(filename)
1634 
1635 def write_settings(filename, sd):
1636  """write_settings(char const * filename, SettingsData sd)"""
1637  return _IMP_multifit.write_settings(filename, sd)
1638 class WeightedExcludedVolumeRestraint(IMP.Restraint):
1639  """Proxy of C++ IMP::multifit::WeightedExcludedVolumeRestraint class"""
1640  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1641 
1642  def __init__(self, *args):
1643  """
1644  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner, FloatKey weight_key) -> WeightedExcludedVolumeRestraint
1645  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner) -> WeightedExcludedVolumeRestraint
1646  """
1647  this = _IMP_multifit.new_WeightedExcludedVolumeRestraint(*args)
1648  try:
1649  self.this.append(this)
1650  except:
1651  self.this = this
1652 
1653  def do_get_inputs(self):
1654  """do_get_inputs(WeightedExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
1655  return _IMP_multifit.WeightedExcludedVolumeRestraint_do_get_inputs(self)
1656 
1657 
1658  def get_version_info(self):
1659  """get_version_info(WeightedExcludedVolumeRestraint self) -> VersionInfo"""
1660  return _IMP_multifit.WeightedExcludedVolumeRestraint_get_version_info(self)
1661 
1662 
1663  def __str__(self):
1664  """__str__(WeightedExcludedVolumeRestraint self) -> std::string"""
1665  return _IMP_multifit.WeightedExcludedVolumeRestraint___str__(self)
1666 
1667 
1668  def __repr__(self):
1669  """__repr__(WeightedExcludedVolumeRestraint self) -> std::string"""
1670  return _IMP_multifit.WeightedExcludedVolumeRestraint___repr__(self)
1671 
1672 
1673  @staticmethod
1674  def get_from(o):
1675  return _object_cast_to_WeightedExcludedVolumeRestraint(o)
1676 
1677 WeightedExcludedVolumeRestraint_swigregister = _IMP_multifit.WeightedExcludedVolumeRestraint_swigregister
1678 WeightedExcludedVolumeRestraint_swigregister(WeightedExcludedVolumeRestraint)
1679 
1680 class FFTFittingOutput(IMP.Object):
1681  """Proxy of C++ IMP::multifit::FFTFittingOutput class"""
1682  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1683 
1684  def __init__(self):
1685  """__init__(IMP::multifit::FFTFittingOutput self) -> FFTFittingOutput"""
1686  this = _IMP_multifit.new_FFTFittingOutput()
1687  try:
1688  self.this.append(this)
1689  except:
1690  self.this = this
1691 
1692  def get_version_info(self):
1693  """get_version_info(FFTFittingOutput self) -> VersionInfo"""
1694  return _IMP_multifit.FFTFittingOutput_get_version_info(self)
1695 
1696  best_fits_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_fits__get, _IMP_multifit.FFTFittingOutput_best_fits__set)
1697  best_trans_per_rot_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_trans_per_rot__get, _IMP_multifit.FFTFittingOutput_best_trans_per_rot__set)
1698 
1699  def __str__(self):
1700  """__str__(FFTFittingOutput self) -> std::string"""
1701  return _IMP_multifit.FFTFittingOutput___str__(self)
1702 
1703 
1704  def __repr__(self):
1705  """__repr__(FFTFittingOutput self) -> std::string"""
1706  return _IMP_multifit.FFTFittingOutput___repr__(self)
1707 
1708 
1709  @staticmethod
1710  def get_from(o):
1711  return _object_cast_to_FFTFittingOutput(o)
1712 
1713 FFTFittingOutput_swigregister = _IMP_multifit.FFTFittingOutput_swigregister
1714 FFTFittingOutput_swigregister(FFTFittingOutput)
1715 
1716 class FFTFitting(IMP.Object):
1717  """Proxy of C++ IMP::multifit::FFTFitting class"""
1718  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1719 
1720  def get_version_info(self):
1721  """get_version_info(FFTFitting self) -> VersionInfo"""
1722  return _IMP_multifit.FFTFitting_get_version_info(self)
1723 
1724 
1725  def __init__(self):
1726  """__init__(IMP::multifit::FFTFitting self) -> FFTFitting"""
1727  this = _IMP_multifit.new_FFTFitting()
1728  try:
1729  self.this.append(this)
1730  except:
1731  self.this = this
1732 
1733  def do_global_fitting(self, *args):
1734  """
1735  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1, std::string const & angles_filename) -> FFTFittingOutput
1736  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1) -> FFTFittingOutput
1737  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True) -> FFTFittingOutput
1738  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle) -> FFTFittingOutput
1739  """
1740  return _IMP_multifit.FFTFitting_do_global_fitting(self, *args)
1741 
1742 
1743  def do_local_fitting(self, *args):
1744  """
1745  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, std::string const & angles_filename) -> FFTFittingOutput
1746  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation) -> FFTFittingOutput
1747  """
1748  return _IMP_multifit.FFTFitting_do_local_fitting(self, *args)
1749 
1750 
1751  def __str__(self):
1752  """__str__(FFTFitting self) -> std::string"""
1753  return _IMP_multifit.FFTFitting___str__(self)
1754 
1755 
1756  def __repr__(self):
1757  """__repr__(FFTFitting self) -> std::string"""
1758  return _IMP_multifit.FFTFitting___repr__(self)
1759 
1760 
1761  @staticmethod
1762  def get_from(o):
1763  return _object_cast_to_FFTFitting(o)
1764 
1765 FFTFitting_swigregister = _IMP_multifit.FFTFitting_swigregister
1766 FFTFitting_swigregister(FFTFitting)
1767 
1768 
1769 def fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad):
1770  """fft_based_rigid_fitting(Hierarchy mol2fit, DensityMap dmap, double density_threshold, double angle_sampling_interval_rad) -> IMP::multifit::FittingSolutionRecords"""
1771  return _IMP_multifit.fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad)
1772 
1773 def remove_background(dmap, threshold, edge_threshold):
1774  """remove_background(DensityMap dmap, float threshold, float edge_threshold) -> DensityMap"""
1775  return _IMP_multifit.remove_background(dmap, threshold, edge_threshold)
1776 
1777 def get_connected_components(dmap, threshold, edge_threshold):
1778  """get_connected_components(DensityMap dmap, float threshold, float edge_threshold) -> IMP::IntsList"""
1779  return _IMP_multifit.get_connected_components(dmap, threshold, edge_threshold)
1780 
1781 def get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename):
1782  """get_segmentation(DensityMap dmap, double apix, double density_threshold, int num_means, std::string const pdb_filename, std::string const cmm_filename, std::string const seg_filename, std::string const txt_filename)"""
1783  return _IMP_multifit.get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename)
1784 class ComplementarityRestraint(IMP.Restraint):
1785  """Proxy of C++ IMP::multifit::ComplementarityRestraint class"""
1786  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1787 
1788  def __init__(self, *args):
1789  """
1790  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b, std::string name) -> ComplementarityRestraint
1791  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> ComplementarityRestraint
1792  """
1793  this = _IMP_multifit.new_ComplementarityRestraint(*args)
1794  try:
1795  self.this.append(this)
1796  except:
1797  self.this = this
1798 
1799  def set_maximum_penetration_score(self, s):
1800  """set_maximum_penetration_score(ComplementarityRestraint self, double s)"""
1801  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration_score(self, s)
1802 
1803 
1804  def set_maximum_penetration(self, d):
1805  """set_maximum_penetration(ComplementarityRestraint self, double d)"""
1806  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration(self, d)
1807 
1808 
1809  def set_maximum_separation(self, s):
1810  """set_maximum_separation(ComplementarityRestraint self, double s)"""
1811  return _IMP_multifit.ComplementarityRestraint_set_maximum_separation(self, s)
1812 
1813 
1814  def set_complementarity_thickness(self, th):
1815  """set_complementarity_thickness(ComplementarityRestraint self, double th)"""
1816  return _IMP_multifit.ComplementarityRestraint_set_complementarity_thickness(self, th)
1817 
1818 
1819  def set_complementarity_value(self, th):
1820  """set_complementarity_value(ComplementarityRestraint self, double th)"""
1821  return _IMP_multifit.ComplementarityRestraint_set_complementarity_value(self, th)
1822 
1823 
1824  def set_interior_layer_thickness(self, th):
1825  """set_interior_layer_thickness(ComplementarityRestraint self, double th)"""
1826  return _IMP_multifit.ComplementarityRestraint_set_interior_layer_thickness(self, th)
1827 
1828 
1829  def set_penetration_coefficient(self, pc):
1830  """set_penetration_coefficient(ComplementarityRestraint self, double pc)"""
1831  return _IMP_multifit.ComplementarityRestraint_set_penetration_coefficient(self, pc)
1832 
1833 
1834  def set_complementarity_coefficient(self, cc):
1835  """set_complementarity_coefficient(ComplementarityRestraint self, double cc)"""
1836  return _IMP_multifit.ComplementarityRestraint_set_complementarity_coefficient(self, cc)
1837 
1838 
1839  def set_boundary_coefficient(self, bc):
1840  """set_boundary_coefficient(ComplementarityRestraint self, double bc)"""
1841  return _IMP_multifit.ComplementarityRestraint_set_boundary_coefficient(self, bc)
1842 
1843 
1844  def get_voxel_size(self):
1845  """get_voxel_size(ComplementarityRestraint self) -> float"""
1846  return _IMP_multifit.ComplementarityRestraint_get_voxel_size(self)
1847 
1848 
1849  def do_get_inputs(self):
1850  """do_get_inputs(ComplementarityRestraint self) -> IMP::ModelObjectsTemp"""
1851  return _IMP_multifit.ComplementarityRestraint_do_get_inputs(self)
1852 
1853 
1854  def get_version_info(self):
1855  """get_version_info(ComplementarityRestraint self) -> VersionInfo"""
1856  return _IMP_multifit.ComplementarityRestraint_get_version_info(self)
1857 
1858 
1859  def __str__(self):
1860  """__str__(ComplementarityRestraint self) -> std::string"""
1861  return _IMP_multifit.ComplementarityRestraint___str__(self)
1862 
1863 
1864  def __repr__(self):
1865  """__repr__(ComplementarityRestraint self) -> std::string"""
1866  return _IMP_multifit.ComplementarityRestraint___repr__(self)
1867 
1868 
1869  @staticmethod
1870  def get_from(o):
1871  return _object_cast_to_ComplementarityRestraint(o)
1872 
1873 ComplementarityRestraint_swigregister = _IMP_multifit.ComplementarityRestraint_swigregister
1874 ComplementarityRestraint_swigregister(ComplementarityRestraint)
1875 
1876 
1877 def read_fitting_solutions(fitting_fn):
1878  """read_fitting_solutions(char const * fitting_fn) -> IMP::multifit::FittingSolutionRecords"""
1879  return _IMP_multifit.read_fitting_solutions(fitting_fn)
1880 
1881 def write_fitting_solutions(fitting_fn, fit_sols, num_sols=-1):
1882  """
1883  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols, int num_sols=-1)
1884  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols)
1885  """
1886  return _IMP_multifit.write_fitting_solutions(fitting_fn, fit_sols, num_sols)
1887 
1888 def convert_em_to_multifit_format(em_fits):
1889  """convert_em_to_multifit_format(FittingSolutions em_fits) -> IMP::multifit::FittingSolutionRecords"""
1890  return _IMP_multifit.convert_em_to_multifit_format(em_fits)
1891 
1892 def convert_multifit_to_em_format(multifit_fits):
1893  """convert_multifit_to_em_format(IMP::multifit::FittingSolutionRecords const & multifit_fits) -> FittingSolutions"""
1894  return _IMP_multifit.convert_multifit_to_em_format(multifit_fits)
1895 
1896 def convert_transformations_to_multifit_format(trans):
1897  """convert_transformations_to_multifit_format(IMP::algebra::Transformation3Ds const & trans) -> IMP::multifit::FittingSolutionRecords"""
1898  return _IMP_multifit.convert_transformations_to_multifit_format(trans)
1899 
1900 def convert_multifit_format_to_transformations(recs):
1901  """convert_multifit_format_to_transformations(IMP::multifit::FittingSolutionRecords const & recs) -> IMP::algebra::Transformation3Ds"""
1902  return _IMP_multifit.convert_multifit_format_to_transformations(recs)
1903 
1904 def get_close_to_point(fit_sols, mh, ap, dist):
1905  """get_close_to_point(IMP::multifit::FittingSolutionRecords const & fit_sols, Hierarchy mh, Particle ap, IMP::Float dist) -> IMP::multifit::FittingSolutionRecords"""
1906  return _IMP_multifit.get_close_to_point(fit_sols, mh, ap, dist)
1907 class ProbabilisticAnchorGraph(IMP.Object):
1908  """Proxy of C++ IMP::multifit::ProbabilisticAnchorGraph class"""
1909  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1910 
1911  def __init__(self, anchor_positions):
1912  """__init__(IMP::multifit::ProbabilisticAnchorGraph self, IMP::algebra::Vector3Ds anchor_positions) -> ProbabilisticAnchorGraph"""
1913  this = _IMP_multifit.new_ProbabilisticAnchorGraph(anchor_positions)
1914  try:
1915  self.this.append(this)
1916  except:
1917  self.this = this
1918 
1919  def add_edge(self, i, j):
1920  """add_edge(ProbabilisticAnchorGraph self, int i, int j)"""
1921  return _IMP_multifit.ProbabilisticAnchorGraph_add_edge(self, i, j)
1922 
1923 
1924  def set_particle_probabilities_on_anchors(self, p, sols):
1925  """set_particle_probabilities_on_anchors(ProbabilisticAnchorGraph self, Particle p, IMP::multifit::FittingSolutionRecords sols)"""
1926  return _IMP_multifit.ProbabilisticAnchorGraph_set_particle_probabilities_on_anchors(self, p, sols)
1927 
1928 
1929  def show(self, *args):
1930  """
1931  show(ProbabilisticAnchorGraph self, _ostream out)
1932  show(ProbabilisticAnchorGraph self)
1933  """
1934  return _IMP_multifit.ProbabilisticAnchorGraph_show(self, *args)
1935 
1936 
1937  def get_number_of_anchors(self):
1938  """get_number_of_anchors(ProbabilisticAnchorGraph self) -> unsigned int"""
1939  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_anchors(self)
1940 
1941 
1942  def get_number_of_edges(self):
1943  """get_number_of_edges(ProbabilisticAnchorGraph self) -> unsigned int"""
1944  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_edges(self)
1945 
1946 
1947  def get_edge_list(self):
1948  """get_edge_list(ProbabilisticAnchorGraph self) -> IMP::IntRanges"""
1949  return _IMP_multifit.ProbabilisticAnchorGraph_get_edge_list(self)
1950 
1951 
1952  def get_anchors(self):
1953  """get_anchors(ProbabilisticAnchorGraph self) -> IMP::algebra::Vector3Ds"""
1954  return _IMP_multifit.ProbabilisticAnchorGraph_get_anchors(self)
1955 
1956 
1957  def get_particle_anchors(self, p, min_prob=0):
1958  """
1959  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p, float min_prob=0) -> IMP::algebra::Vector3Ds
1960  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p) -> IMP::algebra::Vector3Ds
1961  """
1962  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_anchors(self, p, min_prob)
1963 
1964 
1965  def get_are_probabilities_for_particle_set(self, p):
1966  """get_are_probabilities_for_particle_set(ProbabilisticAnchorGraph self, Particle p) -> bool"""
1967  return _IMP_multifit.ProbabilisticAnchorGraph_get_are_probabilities_for_particle_set(self, p)
1968 
1969 
1970  def get_particle_probabilities(self, p):
1971  """get_particle_probabilities(ProbabilisticAnchorGraph self, Particle p) -> IMP::Floats"""
1972  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_probabilities(self, p)
1973 
1974 
1975  def get_version_info(self):
1976  """get_version_info(ProbabilisticAnchorGraph self) -> VersionInfo"""
1977  return _IMP_multifit.ProbabilisticAnchorGraph_get_version_info(self)
1978 
1979 
1980  def __str__(self):
1981  """__str__(ProbabilisticAnchorGraph self) -> std::string"""
1982  return _IMP_multifit.ProbabilisticAnchorGraph___str__(self)
1983 
1984 
1985  def __repr__(self):
1986  """__repr__(ProbabilisticAnchorGraph self) -> std::string"""
1987  return _IMP_multifit.ProbabilisticAnchorGraph___repr__(self)
1988 
1989 
1990  @staticmethod
1991  def get_from(o):
1992  return _object_cast_to_ProbabilisticAnchorGraph(o)
1993 
1994 ProbabilisticAnchorGraph_swigregister = _IMP_multifit.ProbabilisticAnchorGraph_swigregister
1995 ProbabilisticAnchorGraph_swigregister(ProbabilisticAnchorGraph)
1996 
1997 class ProteinRecordData(object):
1998  """Proxy of C++ IMP::multifit::ProteinRecordData class"""
1999  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2000 
2001  def reset_all(self):
2002  """reset_all(ProteinRecordData self)"""
2003  return _IMP_multifit.ProteinRecordData_reset_all(self)
2004 
2005 
2006  def __init__(self, *args):
2007  """
2008  __init__(IMP::multifit::ProteinRecordData self) -> ProteinRecordData
2009  __init__(IMP::multifit::ProteinRecordData self, std::string const & name) -> ProteinRecordData
2010  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, std::string const fn) -> ProteinRecordData
2011  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const fn) -> ProteinRecordData
2012  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const & fn, std::string const & surface_fn, std::string const & ref_fn) -> ProteinRecordData
2013  """
2014  this = _IMP_multifit.new_ProteinRecordData(*args)
2015  try:
2016  self.this.append(this)
2017  except:
2018  self.this = this
2019 
2020  def show(self, *args):
2021  """
2022  show(ProteinRecordData self, _ostream out)
2023  show(ProteinRecordData self)
2024  """
2025  return _IMP_multifit.ProteinRecordData_show(self, *args)
2026 
2027  name_ = _swig_property(_IMP_multifit.ProteinRecordData_name__get, _IMP_multifit.ProteinRecordData_name__set)
2028  start_res_ = _swig_property(_IMP_multifit.ProteinRecordData_start_res__get, _IMP_multifit.ProteinRecordData_start_res__set)
2029  end_res_ = _swig_property(_IMP_multifit.ProteinRecordData_end_res__get, _IMP_multifit.ProteinRecordData_end_res__set)
2030  filename_ = _swig_property(_IMP_multifit.ProteinRecordData_filename__get, _IMP_multifit.ProteinRecordData_filename__set)
2031  surface_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_surface_filename__get, _IMP_multifit.ProteinRecordData_surface_filename__set)
2032  ref_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_ref_filename__get, _IMP_multifit.ProteinRecordData_ref_filename__set)
2033 
2034  def __str__(self):
2035  """__str__(ProteinRecordData self) -> std::string"""
2036  return _IMP_multifit.ProteinRecordData___str__(self)
2037 
2038 
2039  def __repr__(self):
2040  """__repr__(ProteinRecordData self) -> std::string"""
2041  return _IMP_multifit.ProteinRecordData___repr__(self)
2042 
2043  __swig_destroy__ = _IMP_multifit.delete_ProteinRecordData
2044  __del__ = lambda self: None
2045 ProteinRecordData_swigregister = _IMP_multifit.ProteinRecordData_swigregister
2046 ProteinRecordData_swigregister(ProteinRecordData)
2047 
2048 class ProteomicsData(IMP.Object):
2049  """Proxy of C++ IMP::multifit::ProteomicsData class"""
2050  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2051 
2052  def __init__(self):
2053  """__init__(IMP::multifit::ProteomicsData self) -> ProteomicsData"""
2054  this = _IMP_multifit.new_ProteomicsData()
2055  try:
2056  self.this.append(this)
2057  except:
2058  self.this = this
2059 
2060  def add_protein(self, *args):
2061  """
2062  add_protein(ProteomicsData self, std::string name, int start_res, int end_res, std::string const & mol_fn, std::string const & surface_fn, std::string const & ref_fn) -> int
2063  add_protein(ProteomicsData self, ProteinRecordData rec) -> int
2064  """
2065  return _IMP_multifit.ProteomicsData_add_protein(self, *args)
2066 
2067 
2068  def find(self, name):
2069  """find(ProteomicsData self, std::string const & name) -> int"""
2070  return _IMP_multifit.ProteomicsData_find(self, name)
2071 
2072 
2073  def add_interaction(self, ii, used_for_filter, linker_len):
2074  """add_interaction(ProteomicsData self, IMP::Ints const & ii, bool used_for_filter, float linker_len)"""
2075  return _IMP_multifit.ProteomicsData_add_interaction(self, ii, used_for_filter, linker_len)
2076 
2077 
2078  def add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len):
2079  """add_cross_link_interaction(ProteomicsData self, IMP::Int prot1, IMP::Int res1, IMP::Int prot2, IMP::Int res2, bool used_in_filter, IMP::Float linker_len)"""
2080  return _IMP_multifit.ProteomicsData_add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len)
2081 
2082 
2083  def add_ev_pair(self, prot1, prot2):
2084  """add_ev_pair(ProteomicsData self, IMP::Int prot1, IMP::Int prot2)"""
2085  return _IMP_multifit.ProteomicsData_add_ev_pair(self, prot1, prot2)
2086 
2087 
2088  def get_number_of_proteins(self):
2089  """get_number_of_proteins(ProteomicsData self) -> int"""
2090  return _IMP_multifit.ProteomicsData_get_number_of_proteins(self)
2091 
2092 
2093  def get_number_of_interactions(self):
2094  """get_number_of_interactions(ProteomicsData self) -> int"""
2095  return _IMP_multifit.ProteomicsData_get_number_of_interactions(self)
2096 
2097 
2098  def get_interaction(self, interaction_ind):
2099  """get_interaction(ProteomicsData self, int interaction_ind) -> IMP::Ints"""
2100  return _IMP_multifit.ProteomicsData_get_interaction(self, interaction_ind)
2101 
2102 
2103  def get_interaction_part_of_filter(self, interaction_ind):
2104  """get_interaction_part_of_filter(ProteomicsData self, int interaction_ind) -> bool"""
2105  return _IMP_multifit.ProteomicsData_get_interaction_part_of_filter(self, interaction_ind)
2106 
2107 
2108  def get_interaction_linker_length(self, interaction_ind):
2109  """get_interaction_linker_length(ProteomicsData self, int interaction_ind) -> int"""
2110  return _IMP_multifit.ProteomicsData_get_interaction_linker_length(self, interaction_ind)
2111 
2112 
2113  def get_number_of_cross_links(self):
2114  """get_number_of_cross_links(ProteomicsData self) -> int"""
2115  return _IMP_multifit.ProteomicsData_get_number_of_cross_links(self)
2116 
2117 
2118  def get_cross_link(self, xlink_ind):
2119  """get_cross_link(ProteomicsData self, int xlink_ind) -> std::pair< IMP::IntPair,IMP::IntPair >"""
2120  return _IMP_multifit.ProteomicsData_get_cross_link(self, xlink_ind)
2121 
2122 
2123  def get_cross_link_part_of_filter(self, xlink_ind):
2124  """get_cross_link_part_of_filter(ProteomicsData self, int xlink_ind) -> bool"""
2125  return _IMP_multifit.ProteomicsData_get_cross_link_part_of_filter(self, xlink_ind)
2126 
2127 
2128  def get_cross_link_length(self, xlink_ind):
2129  """get_cross_link_length(ProteomicsData self, int xlink_ind) -> float"""
2130  return _IMP_multifit.ProteomicsData_get_cross_link_length(self, xlink_ind)
2131 
2132 
2133  def get_number_of_ev_pairs(self):
2134  """get_number_of_ev_pairs(ProteomicsData self) -> int"""
2135  return _IMP_multifit.ProteomicsData_get_number_of_ev_pairs(self)
2136 
2137 
2138  def get_ev_pair(self, ev_ind):
2139  """get_ev_pair(ProteomicsData self, int ev_ind) -> IMP::IntPair"""
2140  return _IMP_multifit.ProteomicsData_get_ev_pair(self, ev_ind)
2141 
2142 
2143  def get_protein_name(self, protein_ind):
2144  """get_protein_name(ProteomicsData self, int protein_ind) -> std::string"""
2145  return _IMP_multifit.ProteomicsData_get_protein_name(self, protein_ind)
2146 
2147 
2148  def get_end_res(self, protein_ind):
2149  """get_end_res(ProteomicsData self, int protein_ind) -> int"""
2150  return _IMP_multifit.ProteomicsData_get_end_res(self, protein_ind)
2151 
2152 
2153  def get_start_res(self, protein_ind):
2154  """get_start_res(ProteomicsData self, int protein_ind) -> int"""
2155  return _IMP_multifit.ProteomicsData_get_start_res(self, protein_ind)
2156 
2157 
2158  def get_protein_filename(self, protein_ind):
2159  """get_protein_filename(ProteomicsData self, int protein_ind) -> std::string"""
2160  return _IMP_multifit.ProteomicsData_get_protein_filename(self, protein_ind)
2161 
2162 
2163  def get_reference_filename(self, protein_ind):
2164  """get_reference_filename(ProteomicsData self, int protein_ind) -> std::string"""
2165  return _IMP_multifit.ProteomicsData_get_reference_filename(self, protein_ind)
2166 
2167 
2168  def get_surface_filename(self, protein_ind):
2169  """get_surface_filename(ProteomicsData self, int protein_ind) -> std::string"""
2170  return _IMP_multifit.ProteomicsData_get_surface_filename(self, protein_ind)
2171 
2172 
2173  def get_protein_data(self, protein_ind):
2174  """get_protein_data(ProteomicsData self, int protein_ind) -> ProteinRecordData"""
2175  return _IMP_multifit.ProteomicsData_get_protein_data(self, protein_ind)
2176 
2177 
2178  def get_version_info(self):
2179  """get_version_info(ProteomicsData self) -> VersionInfo"""
2180  return _IMP_multifit.ProteomicsData_get_version_info(self)
2181 
2182 
2183  def get_num_allowed_violated_interactions(self):
2184  """get_num_allowed_violated_interactions(ProteomicsData self) -> int"""
2185  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_interactions(self)
2186 
2187 
2188  def set_num_allowed_violated_interactions(self, n):
2189  """set_num_allowed_violated_interactions(ProteomicsData self, int n)"""
2190  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_interactions(self, n)
2191 
2192 
2193  def get_num_allowed_violated_cross_links(self):
2194  """get_num_allowed_violated_cross_links(ProteomicsData self) -> int"""
2195  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_cross_links(self)
2196 
2197 
2198  def set_num_allowed_violated_cross_links(self, n):
2199  """set_num_allowed_violated_cross_links(ProteomicsData self, int n)"""
2200  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_cross_links(self, n)
2201 
2202 
2203  def get_num_allowed_violated_ev(self):
2204  """get_num_allowed_violated_ev(ProteomicsData self) -> int"""
2205  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_ev(self)
2206 
2207 
2208  def set_num_allowed_violated_ev(self, n):
2209  """set_num_allowed_violated_ev(ProteomicsData self, int n)"""
2210  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_ev(self, n)
2211 
2212 
2213  def __str__(self):
2214  """__str__(ProteomicsData self) -> std::string"""
2215  return _IMP_multifit.ProteomicsData___str__(self)
2216 
2217 
2218  def __repr__(self):
2219  """__repr__(ProteomicsData self) -> std::string"""
2220  return _IMP_multifit.ProteomicsData___repr__(self)
2221 
2222 
2223  @staticmethod
2224  def get_from(o):
2225  return _object_cast_to_ProteomicsData(o)
2226 
2227 ProteomicsData_swigregister = _IMP_multifit.ProteomicsData_swigregister
2228 ProteomicsData_swigregister(ProteomicsData)
2229 
2230 
2231 def read_proteomics_data(proteomics_fn):
2232  """read_proteomics_data(char const * proteomics_fn) -> ProteomicsData"""
2233  return _IMP_multifit.read_proteomics_data(proteomics_fn)
2234 
2235 def get_partial_proteomics_data(pd, prot_names):
2236  """get_partial_proteomics_data(ProteomicsData pd, IMP::Strings const & prot_names) -> ProteomicsData"""
2237  return _IMP_multifit.get_partial_proteomics_data(pd, prot_names)
2238 class AnchorsData(object):
2239  """Proxy of C++ IMP::multifit::AnchorsData class"""
2240  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2241 
2242  def __init__(self, *args):
2243  """
2244  __init__(IMP::multifit::AnchorsData self) -> AnchorsData
2245  __init__(IMP::multifit::AnchorsData self, IMP::algebra::Vector3Ds points, IMP::IntPairs edges) -> AnchorsData
2246  """
2247  this = _IMP_multifit.new_AnchorsData(*args)
2248  try:
2249  self.this.append(this)
2250  except:
2251  self.this = this
2252 
2253  def remove_edges_for_node(self, node_ind):
2254  """remove_edges_for_node(AnchorsData self, int node_ind)"""
2255  return _IMP_multifit.AnchorsData_remove_edges_for_node(self, node_ind)
2256 
2257 
2258  def get_number_of_points(self):
2259  """get_number_of_points(AnchorsData self) -> int"""
2260  return _IMP_multifit.AnchorsData_get_number_of_points(self)
2261 
2262 
2263  def get_number_of_edges(self):
2264  """get_number_of_edges(AnchorsData self) -> int"""
2265  return _IMP_multifit.AnchorsData_get_number_of_edges(self)
2266 
2267 
2268  def get_is_point_considered(self, node_ind):
2269  """get_is_point_considered(AnchorsData self, int node_ind) -> bool"""
2270  return _IMP_multifit.AnchorsData_get_is_point_considered(self, node_ind)
2271 
2272 
2273  def show(self, *args):
2274  """
2275  show(AnchorsData self, _ostream out)
2276  show(AnchorsData self)
2277  """
2278  return _IMP_multifit.AnchorsData_show(self, *args)
2279 
2280 
2281  def get_secondary_structure_is_set(self):
2282  """get_secondary_structure_is_set(AnchorsData self) -> bool"""
2283  return _IMP_multifit.AnchorsData_get_secondary_structure_is_set(self)
2284 
2285 
2286  def setup_secondary_structure(self, mdl):
2287  """setup_secondary_structure(AnchorsData self, Model mdl)"""
2288  return _IMP_multifit.AnchorsData_setup_secondary_structure(self, mdl)
2289 
2290 
2291  def set_secondary_structure_probabilities(self, *args):
2292  """
2293  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps, IMP::Ints const & indices)
2294  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps)
2295  """
2296  return _IMP_multifit.AnchorsData_set_secondary_structure_probabilities(self, *args)
2297 
2298 
2299  def get_secondary_structure_particles(self):
2300  """get_secondary_structure_particles(AnchorsData self) -> IMP::Particles"""
2301  return _IMP_multifit.AnchorsData_get_secondary_structure_particles(self)
2302 
2303  points_ = _swig_property(_IMP_multifit.AnchorsData_points__get, _IMP_multifit.AnchorsData_points__set)
2304  consider_point_ = _swig_property(_IMP_multifit.AnchorsData_consider_point__get, _IMP_multifit.AnchorsData_consider_point__set)
2305  edges_ = _swig_property(_IMP_multifit.AnchorsData_edges__get, _IMP_multifit.AnchorsData_edges__set)
2306 
2307  def __str__(self):
2308  """__str__(AnchorsData self) -> std::string"""
2309  return _IMP_multifit.AnchorsData___str__(self)
2310 
2311 
2312  def __repr__(self):
2313  """__repr__(AnchorsData self) -> std::string"""
2314  return _IMP_multifit.AnchorsData___repr__(self)
2315 
2316  __swig_destroy__ = _IMP_multifit.delete_AnchorsData
2317  __del__ = lambda self: None
2318 AnchorsData_swigregister = _IMP_multifit.AnchorsData_swigregister
2319 AnchorsData_swigregister(AnchorsData)
2320 
2321 
2322 def read_anchors_data(txt_filename):
2323  """read_anchors_data(char const * txt_filename) -> AnchorsData"""
2324  return _IMP_multifit.read_anchors_data(txt_filename)
2325 
2326 def write_txt(txt_filename, ad):
2327  """write_txt(std::string const & txt_filename, AnchorsData ad)"""
2328  return _IMP_multifit.write_txt(txt_filename, ad)
2329 
2330 def write_cmm(cmm_filename, marker_set_name, dpa):
2331  """write_cmm(std::string const & cmm_filename, std::string const & marker_set_name, AnchorsData dpa)"""
2332  return _IMP_multifit.write_cmm(cmm_filename, marker_set_name, dpa)
2333 
2334 def create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius):
2335  """create_coarse_molecule_from_density(DensityMap dmap, float dens_threshold, int num_beads, Model mdl, float bead_radius) -> Hierarchy"""
2336  return _IMP_multifit.create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius)
2337 
2338 def create_hit_map(rb, rb_ref, sols, damp):
2339  """create_hit_map(RigidBody rb, Refiner rb_ref, IMP::multifit::FittingSolutionRecords const & sols, DensityMap damp) -> DensityMap"""
2340  return _IMP_multifit.create_hit_map(rb, rb_ref, sols, damp)
2341 
2342 def get_points_close_to_molecule(mh, points, max_dist):
2343  """get_points_close_to_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2344  return _IMP_multifit.get_points_close_to_molecule(mh, points, max_dist)
2345 
2346 def get_points_far_from_molecule(mh, points, max_dist):
2347  """get_points_far_from_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2348  return _IMP_multifit.get_points_far_from_molecule(mh, points, max_dist)
2349 class RadiusOfGyrationRestraint(IMP.Restraint):
2350  """Proxy of C++ IMP::multifit::RadiusOfGyrationRestraint class"""
2351  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2352 
2353  def __init__(self, ps, num_residues, scale=1.):
2354  """
2355  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues, IMP::Float scale=1.) -> RadiusOfGyrationRestraint
2356  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues) -> RadiusOfGyrationRestraint
2357  """
2358  this = _IMP_multifit.new_RadiusOfGyrationRestraint(ps, num_residues, scale)
2359  try:
2360  self.this.append(this)
2361  except:
2362  self.this = this
2363 
2364  def do_get_inputs(self):
2365  """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::ModelObjectsTemp"""
2366  return _IMP_multifit.RadiusOfGyrationRestraint_do_get_inputs(self)
2367 
2368 
2369  def get_version_info(self):
2370  """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
2371  return _IMP_multifit.RadiusOfGyrationRestraint_get_version_info(self)
2372 
2373 
2374  def set_radius_of_gyration(self, r):
2375  """set_radius_of_gyration(RadiusOfGyrationRestraint self, IMP::Float r)"""
2376  return _IMP_multifit.RadiusOfGyrationRestraint_set_radius_of_gyration(self, r)
2377 
2378 
2379  def get_radius_of_gyration(self):
2380  """get_radius_of_gyration(RadiusOfGyrationRestraint self) -> IMP::Float"""
2381  return _IMP_multifit.RadiusOfGyrationRestraint_get_radius_of_gyration(self)
2382 
2383 
2384  def __str__(self):
2385  """__str__(RadiusOfGyrationRestraint self) -> std::string"""
2386  return _IMP_multifit.RadiusOfGyrationRestraint___str__(self)
2387 
2388 
2389  def __repr__(self):
2390  """__repr__(RadiusOfGyrationRestraint self) -> std::string"""
2391  return _IMP_multifit.RadiusOfGyrationRestraint___repr__(self)
2392 
2393 
2394  @staticmethod
2395  def get_from(o):
2396  return _object_cast_to_RadiusOfGyrationRestraint(o)
2397 
2398 RadiusOfGyrationRestraint_swigregister = _IMP_multifit.RadiusOfGyrationRestraint_swigregister
2399 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
2400 
2401 
2402 def get_approximated_radius_of_gyration(len):
2403  """get_approximated_radius_of_gyration(int len) -> float"""
2404  return _IMP_multifit.get_approximated_radius_of_gyration(len)
2405 
2406 def get_actual_radius_of_gyration(ps):
2407  """get_actual_radius_of_gyration(IMP::ParticlesTemp ps) -> float"""
2408  return _IMP_multifit.get_actual_radius_of_gyration(ps)
2409 
2410 def get_approximated_radius(len):
2411  """get_approximated_radius(int len) -> float"""
2412  return _IMP_multifit.get_approximated_radius(len)
2413 class ProteinsAnchorsSamplingSpace(object):
2414  """Proxy of C++ IMP::multifit::ProteinsAnchorsSamplingSpace class"""
2415  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2416 
2417  def __init__(self, prots=None):
2418  """
2419  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self, ProteomicsData prots=None) -> ProteinsAnchorsSamplingSpace
2420  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self) -> ProteinsAnchorsSamplingSpace
2421  """
2422  this = _IMP_multifit.new_ProteinsAnchorsSamplingSpace(prots)
2423  try:
2424  self.this.append(this)
2425  except:
2426  self.this = this
2427 
2428  def set_anchors(self, data):
2429  """set_anchors(ProteinsAnchorsSamplingSpace self, AnchorsData data)"""
2430  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors(self, data)
2431 
2432 
2433  def get_anchors(self):
2434  """get_anchors(ProteinsAnchorsSamplingSpace self) -> AnchorsData"""
2435  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors(self)
2436 
2437 
2438  def get_anchors_filename(self):
2439  """get_anchors_filename(ProteinsAnchorsSamplingSpace self) -> std::string"""
2440  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors_filename(self)
2441 
2442 
2443  def set_anchors_filename(self, fn):
2444  """set_anchors_filename(ProteinsAnchorsSamplingSpace self, std::string const & fn)"""
2445  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors_filename(self, fn)
2446 
2447 
2448  def get_proteomics_data(self):
2449  """get_proteomics_data(ProteinsAnchorsSamplingSpace self) -> ProteomicsData"""
2450  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_proteomics_data(self)
2451 
2452 
2453  def add_protein(self, rec):
2454  """add_protein(ProteinsAnchorsSamplingSpace self, ProteinRecordData rec)"""
2455  return _IMP_multifit.ProteinsAnchorsSamplingSpace_add_protein(self, rec)
2456 
2457 
2458  def get_paths_for_protein(self, prot_name):
2459  """get_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> IMP::IntsList"""
2460  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_for_protein(self, prot_name)
2461 
2462 
2463  def set_paths_filename_for_protein(self, prot_name, paths_filename):
2464  """set_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, std::string const & paths_filename)"""
2465  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_filename_for_protein(self, prot_name, paths_filename)
2466 
2467 
2468  def get_paths_filename_for_protein(self, prot_name):
2469  """get_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> std::string"""
2470  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_filename_for_protein(self, prot_name)
2471 
2472 
2473  def set_paths_for_protein(self, prot_name, paths):
2474  """set_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, IMP::IntsList paths)"""
2475  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_for_protein(self, prot_name, paths)
2476 
2477 
2478  def show(self, *args):
2479  """
2480  show(ProteinsAnchorsSamplingSpace self, _ostream s)
2481  show(ProteinsAnchorsSamplingSpace self)
2482  """
2483  return _IMP_multifit.ProteinsAnchorsSamplingSpace_show(self, *args)
2484 
2485 
2486  def __str__(self):
2487  """__str__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2488  return _IMP_multifit.ProteinsAnchorsSamplingSpace___str__(self)
2489 
2490 
2491  def __repr__(self):
2492  """__repr__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2493  return _IMP_multifit.ProteinsAnchorsSamplingSpace___repr__(self)
2494 
2495  __swig_destroy__ = _IMP_multifit.delete_ProteinsAnchorsSamplingSpace
2496  __del__ = lambda self: None
2497 ProteinsAnchorsSamplingSpace_swigregister = _IMP_multifit.ProteinsAnchorsSamplingSpace_swigregister
2498 ProteinsAnchorsSamplingSpace_swigregister(ProteinsAnchorsSamplingSpace)
2499 
2500 
2501 def read_protein_anchors_mapping(*args):
2502  """
2503  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn, int max_paths) -> ProteinsAnchorsSamplingSpace
2504  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn) -> ProteinsAnchorsSamplingSpace
2505  """
2506  return _IMP_multifit.read_protein_anchors_mapping(*args)
2507 
2508 def write_protein_anchors_mapping(*args):
2509  """
2510  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, std::string const & anchors_fn, std::vector< std::pair< IMP::String,IMP::String >,std::allocator< std::pair< IMP::String,IMP::String > > > const & prot_paths)
2511  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, ProteinsAnchorsSamplingSpace pa, IMP::Strings const & prot_names)
2512  """
2513  return _IMP_multifit.write_protein_anchors_mapping(*args)
2514 
2515 def get_part_of_sampling_space(prots_ss, prot_names):
2516  """get_part_of_sampling_space(ProteinsAnchorsSamplingSpace prots_ss, IMP::Strings const & prot_names) -> ProteinsAnchorsSamplingSpace"""
2517  return _IMP_multifit.get_part_of_sampling_space(prots_ss, prot_names)
2518 
2519 def get_partial_assembly_setting_data(prots_sd, prot_names):
2520  """get_partial_assembly_setting_data(SettingsData prots_sd, IMP::Strings const & prot_names) -> SettingsData"""
2521  return _IMP_multifit.get_partial_assembly_setting_data(prots_sd, prot_names)
2522 
2523 def read_paths(*args):
2524  """
2525  read_paths(char const * txt_filename, int max_paths) -> IMP::IntsList
2526  read_paths(char const * txt_filename) -> IMP::IntsList
2527  """
2528  return _IMP_multifit.read_paths(*args)
2529 
2530 def write_paths(paths, txt_filename):
2531  """write_paths(IMP::IntsList const & paths, std::string const & txt_filename)"""
2532  return _IMP_multifit.write_paths(paths, txt_filename)
2533 
2534 def molecule2anchors(mh, k):
2535  """molecule2anchors(Hierarchy mh, int k) -> AnchorsData"""
2536  return _IMP_multifit.molecule2anchors(mh, k)
2537 
2538 def get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename):
2539  """get_anchors_for_density(DensityMap dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)"""
2540  return _IMP_multifit.get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename)
2541 
2542 def get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd=0.7):
2543  """
2544  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs, IMP::Float max_rmsd=0.7) -> IMP::IntsList
2545  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs) -> IMP::IntsList
2546  """
2547  return _IMP_multifit.get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd)
2548 class DominoParams(object):
2549  """Proxy of C++ IMP::multifit::DominoParams class"""
2550  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2551 
2552  def __init__(self):
2553  """__init__(IMP::multifit::DominoParams self) -> DominoParams"""
2554  this = _IMP_multifit.new_DominoParams()
2555  try:
2556  self.this.append(this)
2557  except:
2558  self.this = this
2559 
2560  def add(self, pt):
2561  """add(DominoParams self, boost::property_tree::ptree const & pt)"""
2562  return _IMP_multifit.DominoParams_add(self, pt)
2563 
2564 
2565  def show(self, *args):
2566  """
2567  show(DominoParams self, _ostream s)
2568  show(DominoParams self)
2569  """
2570  return _IMP_multifit.DominoParams_show(self, *args)
2571 
2572  max_value_threshold_ = _swig_property(_IMP_multifit.DominoParams_max_value_threshold__get, _IMP_multifit.DominoParams_max_value_threshold__set)
2573  max_num_states_for_subset_ = _swig_property(_IMP_multifit.DominoParams_max_num_states_for_subset__get, _IMP_multifit.DominoParams_max_num_states_for_subset__set)
2574  max_anchor_penetration_ = _swig_property(_IMP_multifit.DominoParams_max_anchor_penetration__get, _IMP_multifit.DominoParams_max_anchor_penetration__set)
2575  heap_size_ = _swig_property(_IMP_multifit.DominoParams_heap_size__get, _IMP_multifit.DominoParams_heap_size__set)
2576  cache_size_ = _swig_property(_IMP_multifit.DominoParams_cache_size__get, _IMP_multifit.DominoParams_cache_size__set)
2577 
2578  def __str__(self):
2579  """__str__(DominoParams self) -> std::string"""
2580  return _IMP_multifit.DominoParams___str__(self)
2581 
2582 
2583  def __repr__(self):
2584  """__repr__(DominoParams self) -> std::string"""
2585  return _IMP_multifit.DominoParams___repr__(self)
2586 
2587  __swig_destroy__ = _IMP_multifit.delete_DominoParams
2588  __del__ = lambda self: None
2589 DominoParams_swigregister = _IMP_multifit.DominoParams_swigregister
2590 DominoParams_swigregister(DominoParams)
2591 
2592 class XlinkParams(object):
2593  """Proxy of C++ IMP::multifit::XlinkParams class"""
2594  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2595 
2596  def __init__(self):
2597  """__init__(IMP::multifit::XlinkParams self) -> XlinkParams"""
2598  this = _IMP_multifit.new_XlinkParams()
2599  try:
2600  self.this.append(this)
2601  except:
2602  self.this = this
2603 
2604  def add(self, pt):
2605  """add(XlinkParams self, boost::property_tree::ptree const & pt)"""
2606  return _IMP_multifit.XlinkParams_add(self, pt)
2607 
2608 
2609  def show(self, *args):
2610  """
2611  show(XlinkParams self, _ostream s)
2612  show(XlinkParams self)
2613  """
2614  return _IMP_multifit.XlinkParams_show(self, *args)
2615 
2616  upper_bound_ = _swig_property(_IMP_multifit.XlinkParams_upper_bound__get, _IMP_multifit.XlinkParams_upper_bound__set)
2617  k_ = _swig_property(_IMP_multifit.XlinkParams_k__get, _IMP_multifit.XlinkParams_k__set)
2618  max_xlink_val_ = _swig_property(_IMP_multifit.XlinkParams_max_xlink_val__get, _IMP_multifit.XlinkParams_max_xlink_val__set)
2619  treat_between_residues_ = _swig_property(_IMP_multifit.XlinkParams_treat_between_residues__get, _IMP_multifit.XlinkParams_treat_between_residues__set)
2620 
2621  def __str__(self):
2622  """__str__(XlinkParams self) -> std::string"""
2623  return _IMP_multifit.XlinkParams___str__(self)
2624 
2625 
2626  def __repr__(self):
2627  """__repr__(XlinkParams self) -> std::string"""
2628  return _IMP_multifit.XlinkParams___repr__(self)
2629 
2630  __swig_destroy__ = _IMP_multifit.delete_XlinkParams
2631  __del__ = lambda self: None
2632 XlinkParams_swigregister = _IMP_multifit.XlinkParams_swigregister
2633 XlinkParams_swigregister(XlinkParams)
2634 
2635 class ConnectivityParams(object):
2636  """Proxy of C++ IMP::multifit::ConnectivityParams class"""
2637  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2638 
2639  def __init__(self):
2640  """__init__(IMP::multifit::ConnectivityParams self) -> ConnectivityParams"""
2641  this = _IMP_multifit.new_ConnectivityParams()
2642  try:
2643  self.this.append(this)
2644  except:
2645  self.this = this
2646 
2647  def add(self, pt):
2648  """add(ConnectivityParams self, boost::property_tree::ptree const & pt)"""
2649  return _IMP_multifit.ConnectivityParams_add(self, pt)
2650 
2651 
2652  def show(self, *args):
2653  """
2654  show(ConnectivityParams self, _ostream s)
2655  show(ConnectivityParams self)
2656  """
2657  return _IMP_multifit.ConnectivityParams_show(self, *args)
2658 
2659  upper_bound_ = _swig_property(_IMP_multifit.ConnectivityParams_upper_bound__get, _IMP_multifit.ConnectivityParams_upper_bound__set)
2660  k_ = _swig_property(_IMP_multifit.ConnectivityParams_k__get, _IMP_multifit.ConnectivityParams_k__set)
2661  max_conn_rest_val_ = _swig_property(_IMP_multifit.ConnectivityParams_max_conn_rest_val__get, _IMP_multifit.ConnectivityParams_max_conn_rest_val__set)
2662 
2663  def __str__(self):
2664  """__str__(ConnectivityParams self) -> std::string"""
2665  return _IMP_multifit.ConnectivityParams___str__(self)
2666 
2667 
2668  def __repr__(self):
2669  """__repr__(ConnectivityParams self) -> std::string"""
2670  return _IMP_multifit.ConnectivityParams___repr__(self)
2671 
2672  __swig_destroy__ = _IMP_multifit.delete_ConnectivityParams
2673  __del__ = lambda self: None
2674 ConnectivityParams_swigregister = _IMP_multifit.ConnectivityParams_swigregister
2675 ConnectivityParams_swigregister(ConnectivityParams)
2676 
2677 class FragmentsParams(object):
2678  """Proxy of C++ IMP::multifit::FragmentsParams class"""
2679  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2680 
2681  def __init__(self):
2682  """__init__(IMP::multifit::FragmentsParams self) -> FragmentsParams"""
2683  this = _IMP_multifit.new_FragmentsParams()
2684  try:
2685  self.this.append(this)
2686  except:
2687  self.this = this
2688 
2689  def add(self, pt):
2690  """add(FragmentsParams self, boost::property_tree::ptree const & pt)"""
2691  return _IMP_multifit.FragmentsParams_add(self, pt)
2692 
2693 
2694  def show(self, *args):
2695  """
2696  show(FragmentsParams self, _ostream s)
2697  show(FragmentsParams self)
2698  """
2699  return _IMP_multifit.FragmentsParams_show(self, *args)
2700 
2701  frag_len_ = _swig_property(_IMP_multifit.FragmentsParams_frag_len__get, _IMP_multifit.FragmentsParams_frag_len__set)
2702  bead_radius_scale_ = _swig_property(_IMP_multifit.FragmentsParams_bead_radius_scale__get, _IMP_multifit.FragmentsParams_bead_radius_scale__set)
2703  load_atomic_ = _swig_property(_IMP_multifit.FragmentsParams_load_atomic__get, _IMP_multifit.FragmentsParams_load_atomic__set)
2704  subunit_rigid_ = _swig_property(_IMP_multifit.FragmentsParams_subunit_rigid__get, _IMP_multifit.FragmentsParams_subunit_rigid__set)
2705 
2706  def __str__(self):
2707  """__str__(FragmentsParams self) -> std::string"""
2708  return _IMP_multifit.FragmentsParams___str__(self)
2709 
2710 
2711  def __repr__(self):
2712  """__repr__(FragmentsParams self) -> std::string"""
2713  return _IMP_multifit.FragmentsParams___repr__(self)
2714 
2715  __swig_destroy__ = _IMP_multifit.delete_FragmentsParams
2716  __del__ = lambda self: None
2717 FragmentsParams_swigregister = _IMP_multifit.FragmentsParams_swigregister
2718 FragmentsParams_swigregister(FragmentsParams)
2719 
2720 class RogParams(object):
2721  """Proxy of C++ IMP::multifit::RogParams class"""
2722  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2723 
2724  def __init__(self):
2725  """__init__(IMP::multifit::RogParams self) -> RogParams"""
2726  this = _IMP_multifit.new_RogParams()
2727  try:
2728  self.this.append(this)
2729  except:
2730  self.this = this
2731 
2732  def add(self, pt):
2733  """add(RogParams self, boost::property_tree::ptree const & pt)"""
2734  return _IMP_multifit.RogParams_add(self, pt)
2735 
2736 
2737  def get_max_score(self):
2738  """get_max_score(RogParams self) -> float"""
2739  return _IMP_multifit.RogParams_get_max_score(self)
2740 
2741 
2742  def get_scale(self):
2743  """get_scale(RogParams self) -> float"""
2744  return _IMP_multifit.RogParams_get_scale(self)
2745 
2746 
2747  def show(self, *args):
2748  """
2749  show(RogParams self, _ostream s)
2750  show(RogParams self)
2751  """
2752  return _IMP_multifit.RogParams_show(self, *args)
2753 
2754 
2755  def __str__(self):
2756  """__str__(RogParams self) -> std::string"""
2757  return _IMP_multifit.RogParams___str__(self)
2758 
2759 
2760  def __repr__(self):
2761  """__repr__(RogParams self) -> std::string"""
2762  return _IMP_multifit.RogParams___repr__(self)
2763 
2764  __swig_destroy__ = _IMP_multifit.delete_RogParams
2765  __del__ = lambda self: None
2766 RogParams_swigregister = _IMP_multifit.RogParams_swigregister
2767 RogParams_swigregister(RogParams)
2768 
2769 class EVParams(object):
2770  """Proxy of C++ IMP::multifit::EVParams class"""
2771  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2772 
2773  def __init__(self):
2774  """__init__(IMP::multifit::EVParams self) -> EVParams"""
2775  this = _IMP_multifit.new_EVParams()
2776  try:
2777  self.this.append(this)
2778  except:
2779  self.this = this
2780 
2781  def add(self, pt):
2782  """add(EVParams self, boost::property_tree::ptree const & pt)"""
2783  return _IMP_multifit.EVParams_add(self, pt)
2784 
2785 
2786  def show(self, *args):
2787  """
2788  show(EVParams self, _ostream s)
2789  show(EVParams self)
2790  """
2791  return _IMP_multifit.EVParams_show(self, *args)
2792 
2793  pair_distance_ = _swig_property(_IMP_multifit.EVParams_pair_distance__get, _IMP_multifit.EVParams_pair_distance__set)
2794  pair_slack_ = _swig_property(_IMP_multifit.EVParams_pair_slack__get, _IMP_multifit.EVParams_pair_slack__set)
2795  hlb_mean_ = _swig_property(_IMP_multifit.EVParams_hlb_mean__get, _IMP_multifit.EVParams_hlb_mean__set)
2796  hlb_k_ = _swig_property(_IMP_multifit.EVParams_hlb_k__get, _IMP_multifit.EVParams_hlb_k__set)
2797  maximum_ev_score_for_pair_ = _swig_property(_IMP_multifit.EVParams_maximum_ev_score_for_pair__get, _IMP_multifit.EVParams_maximum_ev_score_for_pair__set)
2798  allowed_percentage_of_bad_pairs_ = _swig_property(_IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__get, _IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__set)
2799  scoring_mode_ = _swig_property(_IMP_multifit.EVParams_scoring_mode__get, _IMP_multifit.EVParams_scoring_mode__set)
2800 
2801  def __str__(self):
2802  """__str__(EVParams self) -> std::string"""
2803  return _IMP_multifit.EVParams___str__(self)
2804 
2805 
2806  def __repr__(self):
2807  """__repr__(EVParams self) -> std::string"""
2808  return _IMP_multifit.EVParams___repr__(self)
2809 
2810  __swig_destroy__ = _IMP_multifit.delete_EVParams
2811  __del__ = lambda self: None
2812 EVParams_swigregister = _IMP_multifit.EVParams_swigregister
2813 EVParams_swigregister(EVParams)
2814 
2815 class FiltersParams(object):
2816  """Proxy of C++ IMP::multifit::FiltersParams class"""
2817  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2818 
2819  def __init__(self):
2820  """__init__(IMP::multifit::FiltersParams self) -> FiltersParams"""
2821  this = _IMP_multifit.new_FiltersParams()
2822  try:
2823  self.this.append(this)
2824  except:
2825  self.this = this
2826 
2827  def add(self, pt):
2828  """add(FiltersParams self, boost::property_tree::ptree const & pt)"""
2829  return _IMP_multifit.FiltersParams_add(self, pt)
2830 
2831 
2832  def show(self, *args):
2833  """
2834  show(FiltersParams self, _ostream s)
2835  show(FiltersParams self)
2836  """
2837  return _IMP_multifit.FiltersParams_show(self, *args)
2838 
2839  max_num_violated_xlink_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_xlink__get, _IMP_multifit.FiltersParams_max_num_violated_xlink__set)
2840  max_num_violated_conn_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_conn__get, _IMP_multifit.FiltersParams_max_num_violated_conn__set)
2841  max_num_violated_ev_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_ev__get, _IMP_multifit.FiltersParams_max_num_violated_ev__set)
2842 
2843  def __str__(self):
2844  """__str__(FiltersParams self) -> std::string"""
2845  return _IMP_multifit.FiltersParams___str__(self)
2846 
2847 
2848  def __repr__(self):
2849  """__repr__(FiltersParams self) -> std::string"""
2850  return _IMP_multifit.FiltersParams___repr__(self)
2851 
2852  __swig_destroy__ = _IMP_multifit.delete_FiltersParams
2853  __del__ = lambda self: None
2854 FiltersParams_swigregister = _IMP_multifit.FiltersParams_swigregister
2855 FiltersParams_swigregister(FiltersParams)
2856 
2857 class FittingParams(object):
2858  """Proxy of C++ IMP::multifit::FittingParams class"""
2859  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2860 
2861  def __init__(self):
2862  """__init__(IMP::multifit::FittingParams self) -> FittingParams"""
2863  this = _IMP_multifit.new_FittingParams()
2864  try:
2865  self.this.append(this)
2866  except:
2867  self.this = this
2868 
2869  def add(self, pt):
2870  """add(FittingParams self, boost::property_tree::ptree const & pt)"""
2871  return _IMP_multifit.FittingParams_add(self, pt)
2872 
2873 
2874  def show(self, *args):
2875  """
2876  show(FittingParams self, _ostream s)
2877  show(FittingParams self)
2878  """
2879  return _IMP_multifit.FittingParams_show(self, *args)
2880 
2881  pca_max_angle_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_angle_diff__get, _IMP_multifit.FittingParams_pca_max_angle_diff__set)
2882  pca_max_size_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_size_diff__get, _IMP_multifit.FittingParams_pca_max_size_diff__set)
2883  pca_max_cent_dist_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_cent_dist_diff__get, _IMP_multifit.FittingParams_pca_max_cent_dist_diff__set)
2884  max_asmb_fit_score_ = _swig_property(_IMP_multifit.FittingParams_max_asmb_fit_score__get, _IMP_multifit.FittingParams_max_asmb_fit_score__set)
2885 
2886  def __str__(self):
2887  """__str__(FittingParams self) -> std::string"""
2888  return _IMP_multifit.FittingParams___str__(self)
2889 
2890 
2891  def __repr__(self):
2892  """__repr__(FittingParams self) -> std::string"""
2893  return _IMP_multifit.FittingParams___repr__(self)
2894 
2895  __swig_destroy__ = _IMP_multifit.delete_FittingParams
2896  __del__ = lambda self: None
2897 FittingParams_swigregister = _IMP_multifit.FittingParams_swigregister
2898 FittingParams_swigregister(FittingParams)
2899 
2900 class ComplementarityParams(object):
2901  """Proxy of C++ IMP::multifit::ComplementarityParams class"""
2902  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2903 
2904  def __init__(self):
2905  """__init__(IMP::multifit::ComplementarityParams self) -> ComplementarityParams"""
2906  this = _IMP_multifit.new_ComplementarityParams()
2907  try:
2908  self.this.append(this)
2909  except:
2910  self.this = this
2911 
2912  def add(self, pt):
2913  """add(ComplementarityParams self, boost::property_tree::ptree const & pt)"""
2914  return _IMP_multifit.ComplementarityParams_add(self, pt)
2915 
2916 
2917  def show(self, *args):
2918  """
2919  show(ComplementarityParams self, _ostream s)
2920  show(ComplementarityParams self)
2921  """
2922  return _IMP_multifit.ComplementarityParams_show(self, *args)
2923 
2924  max_score_ = _swig_property(_IMP_multifit.ComplementarityParams_max_score__get, _IMP_multifit.ComplementarityParams_max_score__set)
2925  max_penetration_ = _swig_property(_IMP_multifit.ComplementarityParams_max_penetration__get, _IMP_multifit.ComplementarityParams_max_penetration__set)
2926  interior_layer_thickness_ = _swig_property(_IMP_multifit.ComplementarityParams_interior_layer_thickness__get, _IMP_multifit.ComplementarityParams_interior_layer_thickness__set)
2927  boundary_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_boundary_coef__get, _IMP_multifit.ComplementarityParams_boundary_coef__set)
2928  comp_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_comp_coef__get, _IMP_multifit.ComplementarityParams_comp_coef__set)
2929  penetration_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_penetration_coef__get, _IMP_multifit.ComplementarityParams_penetration_coef__set)
2930 
2931  def __str__(self):
2932  """__str__(ComplementarityParams self) -> std::string"""
2933  return _IMP_multifit.ComplementarityParams___str__(self)
2934 
2935 
2936  def __repr__(self):
2937  """__repr__(ComplementarityParams self) -> std::string"""
2938  return _IMP_multifit.ComplementarityParams___repr__(self)
2939 
2940  __swig_destroy__ = _IMP_multifit.delete_ComplementarityParams
2941  __del__ = lambda self: None
2942 ComplementarityParams_swigregister = _IMP_multifit.ComplementarityParams_swigregister
2943 ComplementarityParams_swigregister(ComplementarityParams)
2944 
2945 class AlignmentParams(object):
2946  """Proxy of C++ IMP::multifit::AlignmentParams class"""
2947  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2948 
2949  def __init__(self, param_filename):
2950  """__init__(IMP::multifit::AlignmentParams self, char const * param_filename) -> AlignmentParams"""
2951  this = _IMP_multifit.new_AlignmentParams(param_filename)
2952  try:
2953  self.this.append(this)
2954  except:
2955  self.this = this
2956 
2957  def get_domino_params(self):
2958  """get_domino_params(AlignmentParams self) -> DominoParams"""
2959  return _IMP_multifit.AlignmentParams_get_domino_params(self)
2960 
2961 
2962  def get_fitting_params(self):
2963  """get_fitting_params(AlignmentParams self) -> FittingParams"""
2964  return _IMP_multifit.AlignmentParams_get_fitting_params(self)
2965 
2966 
2967  def get_complementarity_params(self):
2968  """get_complementarity_params(AlignmentParams self) -> ComplementarityParams"""
2969  return _IMP_multifit.AlignmentParams_get_complementarity_params(self)
2970 
2971 
2972  def get_xlink_params(self):
2973  """get_xlink_params(AlignmentParams self) -> XlinkParams"""
2974  return _IMP_multifit.AlignmentParams_get_xlink_params(self)
2975 
2976 
2977  def get_connectivity_params(self):
2978  """get_connectivity_params(AlignmentParams self) -> ConnectivityParams"""
2979  return _IMP_multifit.AlignmentParams_get_connectivity_params(self)
2980 
2981 
2982  def get_rog_params(self):
2983  """get_rog_params(AlignmentParams self) -> RogParams"""
2984  return _IMP_multifit.AlignmentParams_get_rog_params(self)
2985 
2986 
2987  def get_fragments_params(self):
2988  """get_fragments_params(AlignmentParams self) -> FragmentsParams"""
2989  return _IMP_multifit.AlignmentParams_get_fragments_params(self)
2990 
2991 
2992  def get_filters_params(self):
2993  """get_filters_params(AlignmentParams self) -> FiltersParams"""
2994  return _IMP_multifit.AlignmentParams_get_filters_params(self)
2995 
2996 
2997  def get_ev_params(self):
2998  """get_ev_params(AlignmentParams self) -> EVParams"""
2999  return _IMP_multifit.AlignmentParams_get_ev_params(self)
3000 
3001 
3002  def show(self, *args):
3003  """
3004  show(AlignmentParams self, _ostream s)
3005  show(AlignmentParams self)
3006  """
3007  return _IMP_multifit.AlignmentParams_show(self, *args)
3008 
3009 
3010  def __str__(self):
3011  """__str__(AlignmentParams self) -> std::string"""
3012  return _IMP_multifit.AlignmentParams___str__(self)
3013 
3014 
3015  def __repr__(self):
3016  """__repr__(AlignmentParams self) -> std::string"""
3017  return _IMP_multifit.AlignmentParams___repr__(self)
3018 
3019  __swig_destroy__ = _IMP_multifit.delete_AlignmentParams
3020  __del__ = lambda self: None
3021 AlignmentParams_swigregister = _IMP_multifit.AlignmentParams_swigregister
3022 AlignmentParams_swigregister(AlignmentParams)
3023 
3024 class ProteomicsEMAlignmentAtomic(IMP.Object):
3025  """Proxy of C++ IMP::multifit::ProteomicsEMAlignmentAtomic class"""
3026  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3027 
3028  def __init__(self, mapping_data, asmb_data, align_param):
3029  """__init__(IMP::multifit::ProteomicsEMAlignmentAtomic self, ProteinsAnchorsSamplingSpace mapping_data, SettingsData asmb_data, AlignmentParams align_param) -> ProteomicsEMAlignmentAtomic"""
3030  this = _IMP_multifit.new_ProteomicsEMAlignmentAtomic(mapping_data, asmb_data, align_param)
3031  try:
3032  self.this.append(this)
3033  except:
3034  self.this = this
3035 
3036  def align(self):
3037  """align(ProteomicsEMAlignmentAtomic self)"""
3038  return _IMP_multifit.ProteomicsEMAlignmentAtomic_align(self)
3039 
3040 
3041  def add_all_restraints(self):
3042  """add_all_restraints(ProteomicsEMAlignmentAtomic self)"""
3043  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_all_restraints(self)
3044 
3045 
3046  def get_restraint_set(self):
3047  """get_restraint_set(ProteomicsEMAlignmentAtomic self) -> RestraintSet"""
3048  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_restraint_set(self)
3049 
3050 
3051  def add_states_and_filters(self):
3052  """add_states_and_filters(ProteomicsEMAlignmentAtomic self)"""
3053  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_states_and_filters(self)
3054 
3055 
3056  def show_domino_merge_tree(self):
3057  """show_domino_merge_tree(ProteomicsEMAlignmentAtomic self)"""
3058  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_domino_merge_tree(self)
3059 
3060 
3061  def get_combinations(self, uniques=False):
3062  """
3063  get_combinations(ProteomicsEMAlignmentAtomic self, bool uniques=False) -> IMP::domino::Assignments
3064  get_combinations(ProteomicsEMAlignmentAtomic self) -> IMP::domino::Assignments
3065  """
3066  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_combinations(self, uniques)
3067 
3068 
3069  def set_density_map(self, dmap, threshold):
3070  """set_density_map(ProteomicsEMAlignmentAtomic self, DensityMap dmap, float threshold)"""
3071  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_density_map(self, dmap, threshold)
3072 
3073 
3074  def get_molecules(self):
3075  """get_molecules(ProteomicsEMAlignmentAtomic self) -> IMP::atom::Hierarchies"""
3076  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_molecules(self)
3077 
3078 
3079  def get_rigid_bodies(self):
3080  """get_rigid_bodies(ProteomicsEMAlignmentAtomic self) -> IMP::core::RigidBodies"""
3081  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_rigid_bodies(self)
3082 
3083 
3084  def load_combination_of_states(self, state4particles):
3085  """load_combination_of_states(ProteomicsEMAlignmentAtomic self, IMP::Ints const & state4particles)"""
3086  return _IMP_multifit.ProteomicsEMAlignmentAtomic_load_combination_of_states(self, state4particles)
3087 
3088 
3089  def show_scores_header(self, *args):
3090  """
3091  show_scores_header(ProteomicsEMAlignmentAtomic self, _ostream ous)
3092  show_scores_header(ProteomicsEMAlignmentAtomic self)
3093  """
3094  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_scores_header(self, *args)
3095 
3096 
3097  def get_model(self):
3098  """get_model(ProteomicsEMAlignmentAtomic self) -> Model"""
3099  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_model(self)
3100 
3101 
3102  def set_fast_scoring(self, state):
3103  """set_fast_scoring(ProteomicsEMAlignmentAtomic self, bool state)"""
3104  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_fast_scoring(self, state)
3105 
3106 
3107  def get_version_info(self):
3108  """get_version_info(ProteomicsEMAlignmentAtomic self) -> VersionInfo"""
3109  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_version_info(self)
3110 
3111 
3112  def __str__(self):
3113  """__str__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3114  return _IMP_multifit.ProteomicsEMAlignmentAtomic___str__(self)
3115 
3116 
3117  def __repr__(self):
3118  """__repr__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3119  return _IMP_multifit.ProteomicsEMAlignmentAtomic___repr__(self)
3120 
3121 
3122  @staticmethod
3123  def get_from(o):
3124  return _object_cast_to_ProteomicsEMAlignmentAtomic(o)
3125 
3126 ProteomicsEMAlignmentAtomic_swigregister = _IMP_multifit.ProteomicsEMAlignmentAtomic_swigregister
3127 ProteomicsEMAlignmentAtomic_swigregister(ProteomicsEMAlignmentAtomic)
3128 
3129 
3130 def write_connolly_surface(atoms, fn, density, probe_radius):
3131  """write_connolly_surface(IMP::atom::Atoms atoms, TextOutput fn, float density, float probe_radius)"""
3132  return _IMP_multifit.write_connolly_surface(atoms, fn, density, probe_radius)
3133 class Ensemble(IMP.Object):
3134  """Proxy of C++ IMP::multifit::Ensemble class"""
3135  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3136 
3137  def load_combination(self, fit_comb):
3138  """load_combination(Ensemble self, IMP::Ints fit_comb)"""
3139  return _IMP_multifit.Ensemble_load_combination(self, fit_comb)
3140 
3141 
3142  def unload_combination(self, fit_comb):
3143  """unload_combination(Ensemble self, IMP::Ints fit_comb)"""
3144  return _IMP_multifit.Ensemble_unload_combination(self, fit_comb)
3145 
3146 
3147  def add_component_and_fits(self, mh, fits):
3148  """add_component_and_fits(Ensemble self, Hierarchy mh, IMP::multifit::FittingSolutionRecords const & fits)"""
3149  return _IMP_multifit.Ensemble_add_component_and_fits(self, mh, fits)
3150 
3151 
3152  def get_molecules(self):
3153  """get_molecules(Ensemble self) -> IMP::atom::Hierarchies"""
3154  return _IMP_multifit.Ensemble_get_molecules(self)
3155 
3156 
3157  def get_rigid_bodies(self):
3158  """get_rigid_bodies(Ensemble self) -> IMP::core::RigidBodies"""
3159  return _IMP_multifit.Ensemble_get_rigid_bodies(self)
3160 
3161 
3162  def get_rmsd(self, second_xyz):
3163  """get_rmsd(Ensemble self, IMP::core::XYZs const & second_xyz) -> float"""
3164  return _IMP_multifit.Ensemble_get_rmsd(self, second_xyz)
3165 
3166 
3167  def __init__(self, sd, mapping_data):
3168  """__init__(IMP::multifit::Ensemble self, SettingsData sd, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3169  this = _IMP_multifit.new_Ensemble(sd, mapping_data)
3170  try:
3171  self.this.append(this)
3172  except:
3173  self.this = this
3174 
3175  def score_by_restraints(self, rs, combinations):
3176  """score_by_restraints(Ensemble self, IMP::Restraints rs, IMP::IntsList const & combinations) -> std::vector< IMP::Floats,std::allocator< IMP::Floats > >"""
3177  return _IMP_multifit.Ensemble_score_by_restraints(self, rs, combinations)
3178 
3179 
3180  def get_version_info(self):
3181  """get_version_info(Ensemble self) -> VersionInfo"""
3182  return _IMP_multifit.Ensemble_get_version_info(self)
3183 
3184 
3185  def __str__(self):
3186  """__str__(Ensemble self) -> std::string"""
3187  return _IMP_multifit.Ensemble___str__(self)
3188 
3189 
3190  def __repr__(self):
3191  """__repr__(Ensemble self) -> std::string"""
3192  return _IMP_multifit.Ensemble___repr__(self)
3193 
3194 
3195  @staticmethod
3196  def get_from(o):
3197  return _object_cast_to_Ensemble(o)
3198 
3199 Ensemble_swigregister = _IMP_multifit.Ensemble_swigregister
3200 Ensemble_swigregister(Ensemble)
3201 
3202 
3203 def load_ensemble(sd, mdl, mapping_data):
3204  """load_ensemble(SettingsData sd, Model mdl, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3205  return _IMP_multifit.load_ensemble(sd, mdl, mapping_data)
3206 class RigidLeavesRefiner(IMP.Refiner):
3207  """Proxy of C++ IMP::multifit::RigidLeavesRefiner class"""
3208  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3209 
3210  def __init__(self, *args):
3211  """
3212  __init__(IMP::multifit::RigidLeavesRefiner self, std::string name) -> RigidLeavesRefiner
3213  __init__(IMP::multifit::RigidLeavesRefiner self) -> RigidLeavesRefiner
3214  """
3215  this = _IMP_multifit.new_RigidLeavesRefiner(*args)
3216  try:
3217  self.this.append(this)
3218  except:
3219  self.this = this
3220 
3221  def do_get_inputs(self, m, pis):
3222  """do_get_inputs(RigidLeavesRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3223  return _IMP_multifit.RigidLeavesRefiner_do_get_inputs(self, m, pis)
3224 
3225 
3226  def get_version_info(self):
3227  """get_version_info(RigidLeavesRefiner self) -> VersionInfo"""
3228  return _IMP_multifit.RigidLeavesRefiner_get_version_info(self)
3229 
3230 
3231  def __str__(self):
3232  """__str__(RigidLeavesRefiner self) -> std::string"""
3233  return _IMP_multifit.RigidLeavesRefiner___str__(self)
3234 
3235 
3236  def __repr__(self):
3237  """__repr__(RigidLeavesRefiner self) -> std::string"""
3238  return _IMP_multifit.RigidLeavesRefiner___repr__(self)
3239 
3240 
3241  @staticmethod
3242  def get_from(o):
3243  return _object_cast_to_RigidLeavesRefiner(o)
3244 
3245 RigidLeavesRefiner_swigregister = _IMP_multifit.RigidLeavesRefiner_swigregister
3246 RigidLeavesRefiner_swigregister(RigidLeavesRefiner)
3247 
3248 
3249 _all_commands = ["param", "anchors", "fit_fft", "cluster", "add_fit_rmsd",
3250  "indexes", "proteomics", "align", "models", "transforms",
3251  "score", "merge_tree", "reference", "refine_fft", "segment"]
3252 
3253 
3254 def get_module_version():
3255  """get_module_version() -> std::string const"""
3256  return _IMP_multifit.get_module_version()
3257 
3258 def get_example_path(fname):
3259  """get_example_path(std::string fname) -> std::string"""
3260  return _IMP_multifit.get_example_path(fname)
3261 
3262 def get_data_path(fname):
3263  """get_data_path(std::string fname) -> std::string"""
3264  return _IMP_multifit.get_data_path(fname)
3265 
3266 from . import _version_check
3267 _version_check.check_version(get_module_version())
3268 __version__ = get_module_version()
3269 
3270 
3271 
IMP::multifit::get_anchor_indices_matching_secondary_structure
IntsList get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
Get lists of anchors that match a sequence of secondary structures.
IMP::multifit::get_close_to_point
FittingSolutionRecords get_close_to_point(const FittingSolutionRecords &fit_sols, atom::Hierarchy mh, IMP::Particle *ap, Float dist)
prune solutions by distance to an anchor point
IMP::modeller::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::multifit::get_connected_components
IntsList get_connected_components(em::DensityMap *dmap, float threshold, float edge_threshold)
Return connected components based on density values.
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::multifit::remove_background
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
IMP::multifit::get_part_of_sampling_space
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
IMP::modeller::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::modeller::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::multifit::get_partial_assembly_setting_data
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::multifit::pca_based_rigid_fitting
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
IMP::statistics
Code to compute statistical measures.
IMP::multifit::add_surface_index
void add_surface_index(core::Hierarchy mhd, Float apix, FloatKey shell_key=FloatKey("surf_ind"), FloatKey radius_key=core::XYZR::get_radius_key(), FloatKey weight_key=atom::Mass::get_mass_key())
Add shell index to leaves.
IMP::domino::get_index
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::multifit::get_anchors_for_density
void get_anchors_for_density(em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
Generate anchors in several formats for a given density map.
IMP::algebra::get_rmsd
double get_rmsd(const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2)
Definition: algebra/distance.h:47
IMP::algebra::get_radius_of_gyration
double get_radius_of_gyration(const Vector3Ds &ps)
Return the radius of gyration of a set of points.
Definition: Vector3D.h:77
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::multifit::write_fitting_solutions
void write_fitting_solutions(const char *fitting_fn, const FittingSolutionRecords &fit_sols, int num_sols=-1)
Write fitting solutions to a file.
IMP::multifit::read_proteomics_data
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
IMP::multifit::create_weighted_excluded_volume_restraint
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
IMP::multifit::get_points_close_to_molecule
algebra::Vector3Ds get_points_close_to_molecule(const atom::Hierarchy &mh, const algebra::Vector3Ds points, Float max_dist)
IMP::multifit::get_segmentation
void get_segmentation(em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
Segment a density map using the anchor graph.
IMP::multifit::write_connolly_surface
void write_connolly_surface(atom::Atoms atoms, TextOutput fn, float density, float probe_radius)
Write the Connolly surface for a set of atoms to a file.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:410
IMP::multifit::fft_based_rigid_fitting
multifit::FittingSolutionRecords fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad)
FFT fit of a molecule in the density.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::multifit::read_paths
IntsList read_paths(const char *txt_filename, int max_paths=INT_MAX)
Read paths.
IMP::multifit::read_fitting_solutions
FittingSolutionRecords read_fitting_solutions(const char *fitting_fn)
Fitting solutions reader.
IMP::Refiner
Abstract class to implement hierarchical methods.
Definition: Refiner.h:34
IMP::atom::get_resolution
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54
IMP::multifit::create_coarse_molecule_from_density
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.