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IMP Reference Guide  2.16.0
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
23  except ImportError:
24  import _IMP_gsl
25  return _IMP_gsl
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_gsl = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_gsl
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_GSL_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
131  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
132  """
133  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
139  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
140  """
141  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
151  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
156  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
161  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
166  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
171  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
176  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
181  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
186  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
191  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
196  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
201  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
207  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
214 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
224 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
225 
226 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
227 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
228 
229 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
230 IMP_SILENT = _IMP_gsl.IMP_SILENT
231 
232 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
233 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
234 
235 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
236 IMP_TERSE = _IMP_gsl.IMP_TERSE
237 
238 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
239 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
240 
241 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
242 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
243 
244 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
245 IMP_NONE = _IMP_gsl.IMP_NONE
246 
247 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
248 IMP_USAGE = _IMP_gsl.IMP_USAGE
249 
250 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
251 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
252 
253 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_gsl.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_gsl)
257 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_gsl)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_gsl.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_gsl)
269 IMP_KERNEL_HAS_NUMPY = _IMP_gsl.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_gsl._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_gsl._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_gsl)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_gsl.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_gsl)
329 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
332 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
333 
334 _IMP_gsl.IMP_C_OPEN_BINARY_swigconstant(_IMP_gsl)
335 IMP_C_OPEN_BINARY = _IMP_gsl.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
340 
341 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
346 
347 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
349 
350 _IMP_gsl.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_gsl)
351 IMP_CGAL_HAS_NUMPY = _IMP_gsl.IMP_CGAL_HAS_NUMPY
352 
353 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
354 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
355 import IMP.cgal
356 
357 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
359 
360 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
362 
363 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
365 
366 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
368 
369 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
371 
372 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
374 
375 _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_gsl)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY
377 
378 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
379 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
380 
381 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
383 import IMP.algebra
384 
385 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
386 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
387 
388 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
389 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
390 
391 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
392 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
393 
394 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
395 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
396 
397 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
398 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
399 
400 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
401 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
402 
403 _IMP_gsl.IMP_GSL_HAS_NUMPY_swigconstant(_IMP_gsl)
404 IMP_GSL_HAS_NUMPY = _IMP_gsl.IMP_GSL_HAS_NUMPY
405 
406 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
407 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
408 
409 _object_types.append("GSLOptimizer")
410 
411 
412 def _object_cast_to_GSLOptimizer(o):
413  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
414  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
415 
416 _object_types.append("ConjugateGradients")
417 
418 
419 def _object_cast_to_ConjugateGradients(o):
420  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
421  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
422 
423 _object_types.append("QuasiNewton")
424 
425 
426 def _object_cast_to_QuasiNewton(o):
427  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
428  return _IMP_gsl._object_cast_to_QuasiNewton(o)
429 
430 _object_types.append("Simplex")
431 
432 
433 def _object_cast_to_Simplex(o):
434  """_object_cast_to_Simplex(Object o) -> Simplex"""
435  return _IMP_gsl._object_cast_to_Simplex(o)
436 class GSLOptimizer(IMP.AttributeOptimizer):
437  """Proxy of C++ IMP::gsl::GSLOptimizer class"""
438  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
439 
440  def __init__(self, m):
441  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
442  if self.__class__ == GSLOptimizer:
443  _self = None
444  else:
445  _self = self
446  this = _IMP_gsl.new_GSLOptimizer(_self, m)
447  try:
448  self.this.append(this)
449  except:
450  self.this = this
451 
452  if self.__class__ != GSLOptimizer:
453  _director_objects.register(self)
454 
455 
456 
457  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
458  __del__ = lambda self: None
459 
460  def set_stop_score(self, d):
461  """set_stop_score(GSLOptimizer self, double d)"""
462  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
463 
464 
465  def __str__(self):
466  """__str__(GSLOptimizer self) -> std::string"""
467  return _IMP_gsl.GSLOptimizer___str__(self)
468 
469 
470  def __repr__(self):
471  """__repr__(GSLOptimizer self) -> std::string"""
472  return _IMP_gsl.GSLOptimizer___repr__(self)
473 
474 
475  @staticmethod
476  def get_from(o):
477  return _object_cast_to_GSLOptimizer(o)
478 
479 
480  def get_type_name(self):
481  return self.__class__.__name__
482  def do_show(self, out):
483  pass
484  def get_version_info(self):
485  if"IMP::gsl" == "IMP":
486  return VersionInfo(self.__module__,
487  __import__(self.__module__).get_module_version())
488  else:
489  return IMP.VersionInfo(self.__module__,
490  __import__(self.__module__).get_module_version())
491  @staticmethod
492  def get_from(o):
493  return _object_cast_to_GSLOptimizer(o)
494 
495  def __disown__(self):
496  self.this.disown()
497  _IMP_gsl.disown_GSLOptimizer(self)
498  return weakref_proxy(self)
499 
500  def do_destroy(self):
501  """do_destroy(GSLOptimizer self)"""
502  return _IMP_gsl.GSLOptimizer_do_destroy(self)
503 
504 
505  def handle_set_has_required_score_states(self, arg0):
506  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
507  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
508 
509 
510  def do_get_inputs(self):
511  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
512  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
513 
514 
515  def do_get_outputs(self):
516  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
517  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
518 
519 
520  def do_get_interactions(self):
521  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
522  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
523 
524 
525  def do_optimize(self, ns):
526  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
527  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
528 
529 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
530 GSLOptimizer_swigregister(GSLOptimizer)
531 
532 class ConjugateGradients(GSLOptimizer):
533  """Proxy of C++ IMP::gsl::ConjugateGradients class"""
534  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
535 
536  def __init__(self, m):
537  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
538  this = _IMP_gsl.new_ConjugateGradients(m)
539  try:
540  self.this.append(this)
541  except:
542  self.this = this
543 
544  def set_threshold(self, mg):
545  """set_threshold(ConjugateGradients self, double mg)"""
546  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
547 
548 
549  def do_optimize(self, max_steps):
550  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
551  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
552 
553 
554  def get_version_info(self):
555  """get_version_info(ConjugateGradients self) -> VersionInfo"""
556  return _IMP_gsl.ConjugateGradients_get_version_info(self)
557 
558 
559  def __str__(self):
560  """__str__(ConjugateGradients self) -> std::string"""
561  return _IMP_gsl.ConjugateGradients___str__(self)
562 
563 
564  def __repr__(self):
565  """__repr__(ConjugateGradients self) -> std::string"""
566  return _IMP_gsl.ConjugateGradients___repr__(self)
567 
568 
569  @staticmethod
570  def get_from(o):
571  return _object_cast_to_ConjugateGradients(o)
572 
573 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
574 ConjugateGradients_swigregister(ConjugateGradients)
575 
576 class QuasiNewton(GSLOptimizer):
577  """Proxy of C++ IMP::gsl::QuasiNewton class"""
578  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
579 
580  def __init__(self, m):
581  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
582  this = _IMP_gsl.new_QuasiNewton(m)
583  try:
584  self.this.append(this)
585  except:
586  self.this = this
587 
588  def set_initial_step(self, length):
589  """set_initial_step(QuasiNewton self, double length)"""
590  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
591 
592 
593  def set_line_step(self, d):
594  """set_line_step(QuasiNewton self, double d)"""
595  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
596 
597 
598  def set_minimum_gradient(self, d):
599  """set_minimum_gradient(QuasiNewton self, double d)"""
600  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
601 
602 
603  def do_optimize(self, max_steps):
604  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
605  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
606 
607 
608  def get_version_info(self):
609  """get_version_info(QuasiNewton self) -> VersionInfo"""
610  return _IMP_gsl.QuasiNewton_get_version_info(self)
611 
612 
613  def __str__(self):
614  """__str__(QuasiNewton self) -> std::string"""
615  return _IMP_gsl.QuasiNewton___str__(self)
616 
617 
618  def __repr__(self):
619  """__repr__(QuasiNewton self) -> std::string"""
620  return _IMP_gsl.QuasiNewton___repr__(self)
621 
622 
623  @staticmethod
624  def get_from(o):
625  return _object_cast_to_QuasiNewton(o)
626 
627 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
628 QuasiNewton_swigregister(QuasiNewton)
629 
630 class Simplex(GSLOptimizer):
631  """Proxy of C++ IMP::gsl::Simplex class"""
632  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
633 
634  def __init__(self, m):
635  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
636  this = _IMP_gsl.new_Simplex(m)
637  try:
638  self.this.append(this)
639  except:
640  self.this = this
641 
642  def set_initial_length(self, length):
643  """set_initial_length(Simplex self, double length)"""
644  return _IMP_gsl.Simplex_set_initial_length(self, length)
645 
646 
647  def set_minimum_size(self, d):
648  """set_minimum_size(Simplex self, double d)"""
649  return _IMP_gsl.Simplex_set_minimum_size(self, d)
650 
651 
652  def do_optimize(self, max_steps):
653  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
654  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
655 
656 
657  def get_version_info(self):
658  """get_version_info(Simplex self) -> VersionInfo"""
659  return _IMP_gsl.Simplex_get_version_info(self)
660 
661 
662  def __str__(self):
663  """__str__(Simplex self) -> std::string"""
664  return _IMP_gsl.Simplex___str__(self)
665 
666 
667  def __repr__(self):
668  """__repr__(Simplex self) -> std::string"""
669  return _IMP_gsl.Simplex___repr__(self)
670 
671 
672  @staticmethod
673  def get_from(o):
674  return _object_cast_to_Simplex(o)
675 
676 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
677 Simplex_swigregister(Simplex)
678 
679 
680 def get_module_version():
681  """get_module_version() -> std::string const"""
682  return _IMP_gsl.get_module_version()
683 
684 def get_example_path(fname):
685  """get_example_path(std::string fname) -> std::string"""
686  return _IMP_gsl.get_example_path(fname)
687 
688 def get_data_path(fname):
689  """get_data_path(std::string fname) -> std::string"""
690  return _IMP_gsl.get_data_path(fname)
691 
692 from . import _version_check
693 _version_check.check_version(get_module_version())
694 __version__ = get_module_version()
695 
696 
697 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Version and module information for Objects.
Definition: VersionInfo.h:28
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.