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IMP Reference Guide  2.15.0
The Integrative Modeling Platform
foxs/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_foxs', [dirname(__file__)])
23  except ImportError:
24  import _IMP_foxs
25  return _IMP_foxs
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_foxs', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_foxs = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_foxs
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_FOXS_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_FOXS_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_foxs.delete_IMP_FOXS_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
125  return _IMP_foxs.IMP_FOXS_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_FOXS_SwigPyIterator self, size_t n=1) -> IMP_FOXS_SwigPyIterator
131  incr(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator
132  """
133  return _IMP_foxs.IMP_FOXS_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_FOXS_SwigPyIterator self, size_t n=1) -> IMP_FOXS_SwigPyIterator
139  decr(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator
140  """
141  return _IMP_foxs.IMP_FOXS_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_foxs.IMP_FOXS_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
151  return _IMP_foxs.IMP_FOXS_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_FOXS_SwigPyIterator self) -> IMP_FOXS_SwigPyIterator"""
156  return _IMP_foxs.IMP_FOXS_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
161  return _IMP_foxs.IMP_FOXS_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
166  return _IMP_foxs.IMP_FOXS_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_FOXS_SwigPyIterator self) -> PyObject *"""
171  return _IMP_foxs.IMP_FOXS_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
176  return _IMP_foxs.IMP_FOXS_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
181  return _IMP_foxs.IMP_FOXS_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> bool"""
186  return _IMP_foxs.IMP_FOXS_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
191  return _IMP_foxs.IMP_FOXS_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
196  return _IMP_foxs.IMP_FOXS_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator"""
201  return _IMP_foxs.IMP_FOXS_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_FOXS_SwigPyIterator self, ptrdiff_t n) -> IMP_FOXS_SwigPyIterator
207  __sub__(IMP_FOXS_SwigPyIterator self, IMP_FOXS_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_foxs.IMP_FOXS_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_FOXS_SwigPyIterator_swigregister = _IMP_foxs.IMP_FOXS_SwigPyIterator_swigregister
214 IMP_FOXS_SwigPyIterator_swigregister(IMP_FOXS_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_foxs.IMP_DEBUG_swigconstant(_IMP_foxs)
224 IMP_DEBUG = _IMP_foxs.IMP_DEBUG
225 
226 _IMP_foxs.IMP_RELEASE_swigconstant(_IMP_foxs)
227 IMP_RELEASE = _IMP_foxs.IMP_RELEASE
228 
229 _IMP_foxs.IMP_SILENT_swigconstant(_IMP_foxs)
230 IMP_SILENT = _IMP_foxs.IMP_SILENT
231 
232 _IMP_foxs.IMP_PROGRESS_swigconstant(_IMP_foxs)
233 IMP_PROGRESS = _IMP_foxs.IMP_PROGRESS
234 
235 _IMP_foxs.IMP_TERSE_swigconstant(_IMP_foxs)
236 IMP_TERSE = _IMP_foxs.IMP_TERSE
237 
238 _IMP_foxs.IMP_VERBOSE_swigconstant(_IMP_foxs)
239 IMP_VERBOSE = _IMP_foxs.IMP_VERBOSE
240 
241 _IMP_foxs.IMP_MEMORY_swigconstant(_IMP_foxs)
242 IMP_MEMORY = _IMP_foxs.IMP_MEMORY
243 
244 _IMP_foxs.IMP_NONE_swigconstant(_IMP_foxs)
245 IMP_NONE = _IMP_foxs.IMP_NONE
246 
247 _IMP_foxs.IMP_USAGE_swigconstant(_IMP_foxs)
248 IMP_USAGE = _IMP_foxs.IMP_USAGE
249 
250 _IMP_foxs.IMP_INTERNAL_swigconstant(_IMP_foxs)
251 IMP_INTERNAL = _IMP_foxs.IMP_INTERNAL
252 
253 _IMP_foxs.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_foxs)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_foxs.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_foxs.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_foxs)
257 IMP_COMPILER_HAS_AUTO = _IMP_foxs.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_foxs.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_foxs)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_foxs.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_foxs.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_foxs)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_foxs.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_foxs.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_foxs.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_foxs.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_foxs)
269 IMP_KERNEL_HAS_NUMPY = _IMP_foxs.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_foxs.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_foxs)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_foxs.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_foxs)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_foxs)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_foxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_foxs.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_foxs)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_foxs.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_foxs._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_foxs._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_foxs.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_foxs)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_foxs.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_foxs.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_foxs)
329 IMP_COMPILER_HAS_FINAL = _IMP_foxs.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_foxs.IMP_HAS_NOEXCEPT_swigconstant(_IMP_foxs)
332 IMP_HAS_NOEXCEPT = _IMP_foxs.IMP_HAS_NOEXCEPT
333 
334 _IMP_foxs.IMP_C_OPEN_BINARY_swigconstant(_IMP_foxs)
335 IMP_C_OPEN_BINARY = _IMP_foxs.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
339 IMP_BENCHMARK_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_FILESYSTEM
340 
341 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
342 IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
345 IMP_BENCHMARK_HAS_BOOST_RANDOM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_RANDOM
346 
347 _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
348 IMP_BENCHMARK_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_BENCHMARK_HAS_BOOST_SYSTEM
349 
350 _IMP_foxs.IMP_BENCHMARK_HAS_NUMPY_swigconstant(_IMP_foxs)
351 IMP_BENCHMARK_HAS_NUMPY = _IMP_foxs.IMP_BENCHMARK_HAS_NUMPY
352 
353 _IMP_foxs.IMPBENCHMARK_SHOW_WARNINGS_swigconstant(_IMP_foxs)
354 IMPBENCHMARK_SHOW_WARNINGS = _IMP_foxs.IMPBENCHMARK_SHOW_WARNINGS
355 import IMP.benchmark
356 
357 _IMP_foxs.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
358 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CGAL_HAS_BOOST_FILESYSTEM
359 
360 _IMP_foxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
361 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
362 
363 _IMP_foxs.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
364 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CGAL_HAS_BOOST_RANDOM
365 
366 _IMP_foxs.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
367 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CGAL_HAS_BOOST_SYSTEM
368 
369 _IMP_foxs.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_foxs)
370 IMP_CGAL_HAS_NUMPY = _IMP_foxs.IMP_CGAL_HAS_NUMPY
371 
372 _IMP_foxs.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_foxs)
373 IMPCGAL_SHOW_WARNINGS = _IMP_foxs.IMPCGAL_SHOW_WARNINGS
374 import IMP.cgal
375 
376 _IMP_foxs.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
377 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_foxs.IMP_ALGEBRA_HAS_IMP_CGAL
378 
379 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
380 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
381 
382 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
383 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
384 
385 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
386 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_RANDOM
387 
388 _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
389 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM
390 
391 _IMP_foxs.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_foxs)
392 IMP_ALGEBRA_HAS_CGAL = _IMP_foxs.IMP_ALGEBRA_HAS_CGAL
393 
394 _IMP_foxs.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_foxs)
395 IMP_ALGEBRA_HAS_NUMPY = _IMP_foxs.IMP_ALGEBRA_HAS_NUMPY
396 
397 _IMP_foxs.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_foxs)
398 IMP_ALGEBRA_HAS_ANN = _IMP_foxs.IMP_ALGEBRA_HAS_ANN
399 
400 _IMP_foxs.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_foxs)
401 IMPALGEBRA_SHOW_WARNINGS = _IMP_foxs.IMPALGEBRA_SHOW_WARNINGS
402 import IMP.algebra
403 
404 _IMP_foxs.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
405 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_foxs.IMP_DISPLAY_HAS_IMP_CGAL
406 
407 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
408 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
409 
410 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
411 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
412 
413 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
414 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_RANDOM
415 
416 _IMP_foxs.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
417 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_DISPLAY_HAS_BOOST_SYSTEM
418 
419 _IMP_foxs.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_foxs)
420 IMP_DISPLAY_HAS_CGAL = _IMP_foxs.IMP_DISPLAY_HAS_CGAL
421 
422 _IMP_foxs.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_foxs)
423 IMP_DISPLAY_HAS_NUMPY = _IMP_foxs.IMP_DISPLAY_HAS_NUMPY
424 
425 _IMP_foxs.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_foxs)
426 IMPDISPLAY_SHOW_WARNINGS = _IMP_foxs.IMPDISPLAY_SHOW_WARNINGS
427 import IMP.display
428 
429 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
430 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
431 
432 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
433 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
434 
435 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
436 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
437 
438 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
439 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
440 
441 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
442 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
443 
444 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_foxs)
445 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_CGAL
446 
447 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_foxs)
448 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_HDF5
449 
450 _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_foxs)
451 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_foxs.IMP_SCORE_FUNCTOR_HAS_NUMPY
452 
453 _IMP_foxs.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_foxs)
454 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_foxs.IMPSCOREFUNCTOR_SHOW_WARNINGS
455 import IMP.score_functor
456 
457 _IMP_foxs.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
458 IMP_CORE_HAS_IMP_CGAL = _IMP_foxs.IMP_CORE_HAS_IMP_CGAL
459 
460 _IMP_foxs.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
461 IMP_CORE_HAS_IMP_KERNEL = _IMP_foxs.IMP_CORE_HAS_IMP_KERNEL
462 
463 _IMP_foxs.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
464 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CORE_HAS_BOOST_FILESYSTEM
465 
466 _IMP_foxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
467 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
468 
469 _IMP_foxs.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
470 IMP_CORE_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CORE_HAS_BOOST_RANDOM
471 
472 _IMP_foxs.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
473 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CORE_HAS_BOOST_SYSTEM
474 
475 _IMP_foxs.IMP_CORE_HAS_CGAL_swigconstant(_IMP_foxs)
476 IMP_CORE_HAS_CGAL = _IMP_foxs.IMP_CORE_HAS_CGAL
477 
478 _IMP_foxs.IMP_CORE_HAS_HDF5_swigconstant(_IMP_foxs)
479 IMP_CORE_HAS_HDF5 = _IMP_foxs.IMP_CORE_HAS_HDF5
480 
481 _IMP_foxs.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_foxs)
482 IMP_CORE_HAS_NUMPY = _IMP_foxs.IMP_CORE_HAS_NUMPY
483 
484 _IMP_foxs.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_foxs)
485 IMPCORE_SHOW_WARNINGS = _IMP_foxs.IMPCORE_SHOW_WARNINGS
486 import IMP.core
487 
488 _IMP_foxs.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_foxs)
489 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_foxs.IMP_CONTAINER_HAS_IMP_ALGEBRA
490 
491 _IMP_foxs.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
492 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_foxs.IMP_CONTAINER_HAS_IMP_CGAL
493 
494 _IMP_foxs.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
495 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_foxs.IMP_CONTAINER_HAS_IMP_DISPLAY
496 
497 _IMP_foxs.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
498 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_foxs.IMP_CONTAINER_HAS_IMP_KERNEL
499 
500 _IMP_foxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
501 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
502 
503 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
504 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
505 
506 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
507 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
508 
509 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
510 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_RANDOM
511 
512 _IMP_foxs.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
513 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_CONTAINER_HAS_BOOST_SYSTEM
514 
515 _IMP_foxs.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_foxs)
516 IMP_CONTAINER_HAS_CGAL = _IMP_foxs.IMP_CONTAINER_HAS_CGAL
517 
518 _IMP_foxs.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_foxs)
519 IMP_CONTAINER_HAS_HDF5 = _IMP_foxs.IMP_CONTAINER_HAS_HDF5
520 
521 _IMP_foxs.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_foxs)
522 IMP_CONTAINER_HAS_NUMPY = _IMP_foxs.IMP_CONTAINER_HAS_NUMPY
523 
524 _IMP_foxs.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_foxs)
525 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_foxs.IMP_CONTAINER_HAS_PYTHON_IHM
526 
527 _IMP_foxs.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_foxs)
528 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_foxs.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
529 
530 _IMP_foxs.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_foxs)
531 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_foxs.IMP_CONTAINER_HAS_ROBIN_MAP
532 
533 _IMP_foxs.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_foxs)
534 IMPCONTAINER_SHOW_WARNINGS = _IMP_foxs.IMPCONTAINER_SHOW_WARNINGS
535 import IMP.container
536 
537 _IMP_foxs.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
538 IMP_ATOM_HAS_IMP_CGAL = _IMP_foxs.IMP_ATOM_HAS_IMP_CGAL
539 
540 _IMP_foxs.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
541 IMP_ATOM_HAS_IMP_KERNEL = _IMP_foxs.IMP_ATOM_HAS_IMP_KERNEL
542 
543 _IMP_foxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
544 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
545 
546 _IMP_foxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
547 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
548 
549 _IMP_foxs.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
550 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_foxs.IMP_ATOM_HAS_BOOST_RANDOM
551 
552 _IMP_foxs.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
553 IMP_ATOM_HAS_BOOST_REGEX = _IMP_foxs.IMP_ATOM_HAS_BOOST_REGEX
554 
555 _IMP_foxs.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
556 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_ATOM_HAS_BOOST_SYSTEM
557 
558 _IMP_foxs.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_foxs)
559 IMP_ATOM_HAS_CGAL = _IMP_foxs.IMP_ATOM_HAS_CGAL
560 
561 _IMP_foxs.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_foxs)
562 IMP_ATOM_HAS_HDF5 = _IMP_foxs.IMP_ATOM_HAS_HDF5
563 
564 _IMP_foxs.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_foxs)
565 IMP_ATOM_HAS_NUMPY = _IMP_foxs.IMP_ATOM_HAS_NUMPY
566 
567 _IMP_foxs.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_foxs)
568 IMP_ATOM_HAS_PYTHON_IHM = _IMP_foxs.IMP_ATOM_HAS_PYTHON_IHM
569 
570 _IMP_foxs.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_foxs)
571 IMPATOM_SHOW_WARNINGS = _IMP_foxs.IMPATOM_SHOW_WARNINGS
572 
573 _IMP_foxs.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_foxs)
574 IMP_ATOM_TYPE_INDEX = _IMP_foxs.IMP_ATOM_TYPE_INDEX
575 
576 _IMP_foxs.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_foxs)
577 IMP_RESIDUE_TYPE_INDEX = _IMP_foxs.IMP_RESIDUE_TYPE_INDEX
578 
579 _IMP_foxs.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_foxs)
580 IMP_HIERARCHY_TYPE_INDEX = _IMP_foxs.IMP_HIERARCHY_TYPE_INDEX
581 
582 _IMP_foxs.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_foxs)
583 IMP_CHAIN_TYPE_INDEX = _IMP_foxs.IMP_CHAIN_TYPE_INDEX
584 import IMP.atom
585 
586 _IMP_foxs.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
587 IMP_SAXS_HAS_IMP_CGAL = _IMP_foxs.IMP_SAXS_HAS_IMP_CGAL
588 
589 _IMP_foxs.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_foxs)
590 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_foxs.IMP_SAXS_HAS_IMP_CONTAINER
591 
592 _IMP_foxs.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
593 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_foxs.IMP_SAXS_HAS_IMP_DISPLAY
594 
595 _IMP_foxs.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_foxs)
596 IMP_SAXS_HAS_IMP_KERNEL = _IMP_foxs.IMP_SAXS_HAS_IMP_KERNEL
597 
598 _IMP_foxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
599 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
600 
601 _IMP_foxs.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
602 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_SAXS_HAS_BOOST_FILESYSTEM
603 
604 _IMP_foxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_foxs)
605 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_foxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
606 
607 _IMP_foxs.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
608 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_foxs.IMP_SAXS_HAS_BOOST_RANDOM
609 
610 _IMP_foxs.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
611 IMP_SAXS_HAS_BOOST_REGEX = _IMP_foxs.IMP_SAXS_HAS_BOOST_REGEX
612 
613 _IMP_foxs.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
614 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_SAXS_HAS_BOOST_SYSTEM
615 
616 _IMP_foxs.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_foxs)
617 IMP_SAXS_HAS_CGAL = _IMP_foxs.IMP_SAXS_HAS_CGAL
618 
619 _IMP_foxs.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_foxs)
620 IMP_SAXS_HAS_HDF5 = _IMP_foxs.IMP_SAXS_HAS_HDF5
621 
622 _IMP_foxs.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_foxs)
623 IMP_SAXS_HAS_NUMPY = _IMP_foxs.IMP_SAXS_HAS_NUMPY
624 
625 _IMP_foxs.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_foxs)
626 IMP_SAXS_HAS_PYTHON_IHM = _IMP_foxs.IMP_SAXS_HAS_PYTHON_IHM
627 
628 _IMP_foxs.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_foxs)
629 IMPSAXS_SHOW_WARNINGS = _IMP_foxs.IMPSAXS_SHOW_WARNINGS
630 import IMP.saxs
631 
632 _IMP_foxs.IMP_FOXS_HAS_IMP_CGAL_swigconstant(_IMP_foxs)
633 IMP_FOXS_HAS_IMP_CGAL = _IMP_foxs.IMP_FOXS_HAS_IMP_CGAL
634 
635 _IMP_foxs.IMP_FOXS_HAS_IMP_CONTAINER_swigconstant(_IMP_foxs)
636 IMP_FOXS_HAS_IMP_CONTAINER = _IMP_foxs.IMP_FOXS_HAS_IMP_CONTAINER
637 
638 _IMP_foxs.IMP_FOXS_HAS_IMP_DISPLAY_swigconstant(_IMP_foxs)
639 IMP_FOXS_HAS_IMP_DISPLAY = _IMP_foxs.IMP_FOXS_HAS_IMP_DISPLAY
640 
641 _IMP_foxs.IMP_FOXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_foxs)
642 IMP_FOXS_HAS_IMP_SCORE_FUNCTOR = _IMP_foxs.IMP_FOXS_HAS_IMP_SCORE_FUNCTOR
643 
644 _IMP_foxs.IMP_FOXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_foxs)
645 IMP_FOXS_HAS_BOOST_FILESYSTEM = _IMP_foxs.IMP_FOXS_HAS_BOOST_FILESYSTEM
646 
647 _IMP_foxs.IMP_FOXS_HAS_BOOST_RANDOM_swigconstant(_IMP_foxs)
648 IMP_FOXS_HAS_BOOST_RANDOM = _IMP_foxs.IMP_FOXS_HAS_BOOST_RANDOM
649 
650 _IMP_foxs.IMP_FOXS_HAS_BOOST_REGEX_swigconstant(_IMP_foxs)
651 IMP_FOXS_HAS_BOOST_REGEX = _IMP_foxs.IMP_FOXS_HAS_BOOST_REGEX
652 
653 _IMP_foxs.IMP_FOXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_foxs)
654 IMP_FOXS_HAS_BOOST_SYSTEM = _IMP_foxs.IMP_FOXS_HAS_BOOST_SYSTEM
655 
656 _IMP_foxs.IMP_FOXS_HAS_CGAL_swigconstant(_IMP_foxs)
657 IMP_FOXS_HAS_CGAL = _IMP_foxs.IMP_FOXS_HAS_CGAL
658 
659 _IMP_foxs.IMP_FOXS_HAS_HDF5_swigconstant(_IMP_foxs)
660 IMP_FOXS_HAS_HDF5 = _IMP_foxs.IMP_FOXS_HAS_HDF5
661 
662 _IMP_foxs.IMP_FOXS_HAS_NUMPY_swigconstant(_IMP_foxs)
663 IMP_FOXS_HAS_NUMPY = _IMP_foxs.IMP_FOXS_HAS_NUMPY
664 
665 _IMP_foxs.IMP_FOXS_HAS_PYTHON_IHM_swigconstant(_IMP_foxs)
666 IMP_FOXS_HAS_PYTHON_IHM = _IMP_foxs.IMP_FOXS_HAS_PYTHON_IHM
667 
668 _IMP_foxs.IMPFOXS_SHOW_WARNINGS_swigconstant(_IMP_foxs)
669 IMPFOXS_SHOW_WARNINGS = _IMP_foxs.IMPFOXS_SHOW_WARNINGS
670 
671 def get_module_version():
672  """get_module_version() -> std::string const"""
673  return _IMP_foxs.get_module_version()
674 
675 def get_example_path(fname):
676  """get_example_path(std::string fname) -> std::string"""
677  return _IMP_foxs.get_example_path(fname)
678 
679 def get_data_path(fname):
680  """get_data_path(std::string fname) -> std::string"""
681  return _IMP_foxs.get_data_path(fname)
682 
683 from . import _version_check
684 _version_check.check_version(get_module_version())
685 __version__ = get_module_version()
686 
687 
688 
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for developing and analyzing benchmarks of IMP code.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Support for small angle X-ray scattering (SAXS) data.