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IMP Reference Guide  2.15.0
The Integrative Modeling Platform
version 2.15.0
bayesianem/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_bayesianem', [dirname(__file__)])
23  except ImportError:
24  import _IMP_bayesianem
25  return _IMP_bayesianem
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_bayesianem', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_bayesianem = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_bayesianem
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_BAYESIANEM_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_BAYESIANEM_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_bayesianem.delete_IMP_BAYESIANEM_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
125  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
131  incr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
132  """
133  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
139  decr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
140  """
141  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
151  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator"""
156  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
161  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
166  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
171  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
176  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
181  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
186  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
191  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
196  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
201  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator
207  __sub__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_BAYESIANEM_SwigPyIterator_swigregister = _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_swigregister
214 IMP_BAYESIANEM_SwigPyIterator_swigregister(IMP_BAYESIANEM_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_bayesianem.IMP_DEBUG_swigconstant(_IMP_bayesianem)
224 IMP_DEBUG = _IMP_bayesianem.IMP_DEBUG
225 
226 _IMP_bayesianem.IMP_RELEASE_swigconstant(_IMP_bayesianem)
227 IMP_RELEASE = _IMP_bayesianem.IMP_RELEASE
228 
229 _IMP_bayesianem.IMP_SILENT_swigconstant(_IMP_bayesianem)
230 IMP_SILENT = _IMP_bayesianem.IMP_SILENT
231 
232 _IMP_bayesianem.IMP_PROGRESS_swigconstant(_IMP_bayesianem)
233 IMP_PROGRESS = _IMP_bayesianem.IMP_PROGRESS
234 
235 _IMP_bayesianem.IMP_TERSE_swigconstant(_IMP_bayesianem)
236 IMP_TERSE = _IMP_bayesianem.IMP_TERSE
237 
238 _IMP_bayesianem.IMP_VERBOSE_swigconstant(_IMP_bayesianem)
239 IMP_VERBOSE = _IMP_bayesianem.IMP_VERBOSE
240 
241 _IMP_bayesianem.IMP_MEMORY_swigconstant(_IMP_bayesianem)
242 IMP_MEMORY = _IMP_bayesianem.IMP_MEMORY
243 
244 _IMP_bayesianem.IMP_NONE_swigconstant(_IMP_bayesianem)
245 IMP_NONE = _IMP_bayesianem.IMP_NONE
246 
247 _IMP_bayesianem.IMP_USAGE_swigconstant(_IMP_bayesianem)
248 IMP_USAGE = _IMP_bayesianem.IMP_USAGE
249 
250 _IMP_bayesianem.IMP_INTERNAL_swigconstant(_IMP_bayesianem)
251 IMP_INTERNAL = _IMP_bayesianem.IMP_INTERNAL
252 
253 _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_bayesianem)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_bayesianem.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_bayesianem)
257 IMP_COMPILER_HAS_AUTO = _IMP_bayesianem.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_bayesianem)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_bayesianem.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_bayesianem)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_bayesianem.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
269 IMP_KERNEL_HAS_NUMPY = _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_bayesianem)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_bayesianem)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_bayesianem)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_bayesianem._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_bayesianem._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_bayesianem.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_bayesianem)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_bayesianem.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_bayesianem.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_bayesianem)
329 IMP_COMPILER_HAS_FINAL = _IMP_bayesianem.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_bayesianem.IMP_HAS_NOEXCEPT_swigconstant(_IMP_bayesianem)
332 IMP_HAS_NOEXCEPT = _IMP_bayesianem.IMP_HAS_NOEXCEPT
333 
334 _IMP_bayesianem.IMP_C_OPEN_BINARY_swigconstant(_IMP_bayesianem)
335 IMP_C_OPEN_BINARY = _IMP_bayesianem.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM
340 
341 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM
346 
347 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM
349 
350 _IMP_bayesianem.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
351 IMP_CGAL_HAS_NUMPY = _IMP_bayesianem.IMP_CGAL_HAS_NUMPY
352 
353 _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
354 IMPCGAL_SHOW_WARNINGS = _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS
355 import IMP.cgal
356 
357 _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL
359 
360 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
362 
363 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
365 
366 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM
368 
369 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM
371 
372 _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_bayesianem)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL
374 
375 _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_bayesianem)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY
377 
378 _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_bayesianem)
379 IMP_ALGEBRA_HAS_ANN = _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN
380 
381 _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS
383 import IMP.algebra
384 
385 _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
386 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL
387 
388 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
389 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
390 
391 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
392 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
393 
394 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
395 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM
396 
397 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
398 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM
399 
400 _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_bayesianem)
401 IMP_DISPLAY_HAS_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL
402 
403 _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_bayesianem)
404 IMP_DISPLAY_HAS_NUMPY = _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY
405 
406 _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
407 IMPDISPLAY_SHOW_WARNINGS = _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS
408 import IMP.display
409 
410 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
411 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
412 
413 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
414 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
415 
416 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
417 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
418 
419 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
420 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
421 
422 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
423 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
424 
425 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_bayesianem)
426 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL
427 
428 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_bayesianem)
429 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5
430 
431 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_bayesianem)
432 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY
433 
434 _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
435 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS
436 import IMP.score_functor
437 
438 _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
439 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL
440 
441 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
442 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
443 
444 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
445 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
446 
447 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
448 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM
449 
450 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
451 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM
452 
453 _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_bayesianem)
454 IMP_STATISTICS_HAS_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL
455 
456 _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
457 IMP_STATISTICS_HAS_NUMPY = _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY
458 
459 _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
460 IMPSTATISTICS_SHOW_WARNINGS = _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS
461 import IMP.statistics
462 
463 _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
464 IMP_CORE_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL
465 
466 _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
467 IMP_CORE_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL
468 
469 _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
470 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM
471 
472 _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
473 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
474 
475 _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
476 IMP_CORE_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM
477 
478 _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
479 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM
480 
481 _IMP_bayesianem.IMP_CORE_HAS_CGAL_swigconstant(_IMP_bayesianem)
482 IMP_CORE_HAS_CGAL = _IMP_bayesianem.IMP_CORE_HAS_CGAL
483 
484 _IMP_bayesianem.IMP_CORE_HAS_HDF5_swigconstant(_IMP_bayesianem)
485 IMP_CORE_HAS_HDF5 = _IMP_bayesianem.IMP_CORE_HAS_HDF5
486 
487 _IMP_bayesianem.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_bayesianem)
488 IMP_CORE_HAS_NUMPY = _IMP_bayesianem.IMP_CORE_HAS_NUMPY
489 
490 _IMP_bayesianem.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
491 IMPCORE_SHOW_WARNINGS = _IMP_bayesianem.IMPCORE_SHOW_WARNINGS
492 import IMP.core
493 
494 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_bayesianem)
495 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA
496 
497 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
498 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL
499 
500 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
501 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY
502 
503 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
504 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL
505 
506 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
507 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
508 
509 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
510 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
511 
512 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
513 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
514 
515 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
516 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM
517 
518 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
519 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM
520 
521 _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_bayesianem)
522 IMP_CONTAINER_HAS_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL
523 
524 _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_bayesianem)
525 IMP_CONTAINER_HAS_HDF5 = _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5
526 
527 _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_bayesianem)
528 IMP_CONTAINER_HAS_NUMPY = _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY
529 
530 _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
531 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM
532 
533 _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_bayesianem)
534 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
535 
536 _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_bayesianem)
537 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP
538 
539 _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
540 IMPCONTAINER_SHOW_WARNINGS = _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS
541 import IMP.container
542 
543 _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
544 IMP_ATOM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL
545 
546 _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
547 IMP_ATOM_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL
548 
549 _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
550 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
551 
552 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
553 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
554 
555 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
556 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM
557 
558 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
559 IMP_ATOM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX
560 
561 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
562 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM
563 
564 _IMP_bayesianem.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_bayesianem)
565 IMP_ATOM_HAS_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_CGAL
566 
567 _IMP_bayesianem.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_bayesianem)
568 IMP_ATOM_HAS_HDF5 = _IMP_bayesianem.IMP_ATOM_HAS_HDF5
569 
570 _IMP_bayesianem.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
571 IMP_ATOM_HAS_NUMPY = _IMP_bayesianem.IMP_ATOM_HAS_NUMPY
572 
573 _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
574 IMP_ATOM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM
575 
576 _IMP_bayesianem.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
577 IMPATOM_SHOW_WARNINGS = _IMP_bayesianem.IMPATOM_SHOW_WARNINGS
578 
579 _IMP_bayesianem.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_bayesianem)
580 IMP_ATOM_TYPE_INDEX = _IMP_bayesianem.IMP_ATOM_TYPE_INDEX
581 
582 _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_bayesianem)
583 IMP_RESIDUE_TYPE_INDEX = _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX
584 
585 _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_bayesianem)
586 IMP_HIERARCHY_TYPE_INDEX = _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX
587 
588 _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_bayesianem)
589 IMP_CHAIN_TYPE_INDEX = _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX
590 import IMP.atom
591 
592 _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
593 IMP_EM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL
594 
595 _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
596 IMP_EM_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER
597 
598 _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
599 IMP_EM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY
600 
601 _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
602 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR
603 
604 _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
605 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM
606 
607 _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
608 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
609 
610 _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
611 IMP_EM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM
612 
613 _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
614 IMP_EM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX
615 
616 _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
617 IMP_EM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM
618 
619 _IMP_bayesianem.IMP_EM_HAS_CGAL_swigconstant(_IMP_bayesianem)
620 IMP_EM_HAS_CGAL = _IMP_bayesianem.IMP_EM_HAS_CGAL
621 
622 _IMP_bayesianem.IMP_EM_HAS_HDF5_swigconstant(_IMP_bayesianem)
623 IMP_EM_HAS_HDF5 = _IMP_bayesianem.IMP_EM_HAS_HDF5
624 
625 _IMP_bayesianem.IMP_EM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
626 IMP_EM_HAS_NUMPY = _IMP_bayesianem.IMP_EM_HAS_NUMPY
627 
628 _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
629 IMP_EM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM
630 
631 _IMP_bayesianem.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
632 IMPEM_SHOW_WARNINGS = _IMP_bayesianem.IMPEM_SHOW_WARNINGS
633 import IMP.em
634 
635 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
636 IMP_SAXS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL
637 
638 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
639 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER
640 
641 _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
642 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY
643 
644 _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
645 IMP_SAXS_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL
646 
647 _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
648 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
649 
650 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
651 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM
652 
653 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
654 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
655 
656 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
657 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM
658 
659 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
660 IMP_SAXS_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX
661 
662 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
663 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM
664 
665 _IMP_bayesianem.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_bayesianem)
666 IMP_SAXS_HAS_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_CGAL
667 
668 _IMP_bayesianem.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_bayesianem)
669 IMP_SAXS_HAS_HDF5 = _IMP_bayesianem.IMP_SAXS_HAS_HDF5
670 
671 _IMP_bayesianem.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
672 IMP_SAXS_HAS_NUMPY = _IMP_bayesianem.IMP_SAXS_HAS_NUMPY
673 
674 _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
675 IMP_SAXS_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM
676 
677 _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
678 IMPSAXS_SHOW_WARNINGS = _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS
679 import IMP.saxs
680 
681 _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
682 IMP_ISD_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL
683 
684 _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
685 IMP_ISD_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY
686 
687 _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
688 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
689 
690 _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
691 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM
692 
693 _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
694 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
695 
696 _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
697 IMP_ISD_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM
698 
699 _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
700 IMP_ISD_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX
701 
702 _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
703 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM
704 
705 _IMP_bayesianem.IMP_ISD_HAS_CGAL_swigconstant(_IMP_bayesianem)
706 IMP_ISD_HAS_CGAL = _IMP_bayesianem.IMP_ISD_HAS_CGAL
707 
708 _IMP_bayesianem.IMP_ISD_HAS_HDF5_swigconstant(_IMP_bayesianem)
709 IMP_ISD_HAS_HDF5 = _IMP_bayesianem.IMP_ISD_HAS_HDF5
710 
711 _IMP_bayesianem.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_bayesianem)
712 IMP_ISD_HAS_NUMPY = _IMP_bayesianem.IMP_ISD_HAS_NUMPY
713 
714 _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
715 IMP_ISD_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM
716 
717 _IMP_bayesianem.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
718 IMPISD_SHOW_WARNINGS = _IMP_bayesianem.IMPISD_SHOW_WARNINGS
719 import IMP.isd
720 
721 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
722 IMP_BAYESIANEM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL
723 
724 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
725 IMP_BAYESIANEM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY
726 
727 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
728 IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR
729 
730 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
731 IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM
732 
733 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
734 IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS
735 
736 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
737 IMP_BAYESIANEM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM
738 
739 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
740 IMP_BAYESIANEM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX
741 
742 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
743 IMP_BAYESIANEM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM
744 
745 _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL_swigconstant(_IMP_bayesianem)
746 IMP_BAYESIANEM_HAS_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL
747 
748 _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5_swigconstant(_IMP_bayesianem)
749 IMP_BAYESIANEM_HAS_HDF5 = _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5
750 
751 _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
752 IMP_BAYESIANEM_HAS_NUMPY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY
753 
754 _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
755 IMP_BAYESIANEM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM
756 
757 _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
758 IMPBAYESIANEM_SHOW_WARNINGS = _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS
759 
760 _object_types.append("GaussianEMRestraint")
761 
762 class GaussianEMRestraint(IMP.Restraint):
763  """Proxy of C++ IMP::bayesianem::GaussianEMRestraint class"""
764  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
765 
766  def __init__(self, *args):
767  """
768  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False, std::string name) -> GaussianEMRestraint
769  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False) -> GaussianEMRestraint
770  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True) -> GaussianEMRestraint
771  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope) -> GaussianEMRestraint
772  """
773  this = _IMP_bayesianem.new_GaussianEMRestraint(*args)
774  try:
775  self.this.append(this)
776  except:
777  self.this = this
778 
779  def get_probability(self):
780  """get_probability(GaussianEMRestraint self) -> double"""
781  return _IMP_bayesianem.GaussianEMRestraint_get_probability(self)
782 
783 
784  def set_density_filename(self, density_fn):
785  """set_density_filename(GaussianEMRestraint self, std::string density_fn)"""
786  return _IMP_bayesianem.GaussianEMRestraint_set_density_filename(self, density_fn)
787 
788 
789  def compute_initial_scores(self):
790  """compute_initial_scores(GaussianEMRestraint self)"""
791  return _IMP_bayesianem.GaussianEMRestraint_compute_initial_scores(self)
792 
793 
794  def get_indexes(self):
795  """get_indexes(GaussianEMRestraint self) -> IMP::ParticleIndexes const"""
796  return _IMP_bayesianem.GaussianEMRestraint_get_indexes(self)
797 
798 
799  def get_log2(self):
800  """get_log2(GaussianEMRestraint self) -> IMP::Floats const"""
801  return _IMP_bayesianem.GaussianEMRestraint_get_log2(self)
802 
803 
804  def debug(self):
805  """debug(GaussianEMRestraint self)"""
806  return _IMP_bayesianem.GaussianEMRestraint_debug(self)
807 
808 
809  def set_slope(self, s):
810  """set_slope(GaussianEMRestraint self, IMP::Float s)"""
811  return _IMP_bayesianem.GaussianEMRestraint_set_slope(self, s)
812 
813 
814  def get_slope(self):
815  """get_slope(GaussianEMRestraint self) -> IMP::Float"""
816  return _IMP_bayesianem.GaussianEMRestraint_get_slope(self)
817 
818 
819  def do_get_inputs(self):
820  """do_get_inputs(GaussianEMRestraint self) -> IMP::ModelObjectsTemp"""
821  return _IMP_bayesianem.GaussianEMRestraint_do_get_inputs(self)
822 
823 
824  def show(self, out):
825  """show(GaussianEMRestraint self, _ostream out)"""
826  return _IMP_bayesianem.GaussianEMRestraint_show(self, out)
827 
828 
829  def get_version_info(self):
830  """get_version_info(GaussianEMRestraint self) -> VersionInfo"""
831  return _IMP_bayesianem.GaussianEMRestraint_get_version_info(self)
832 
833 
834  def __str__(self):
835  """__str__(GaussianEMRestraint self) -> std::string"""
836  return _IMP_bayesianem.GaussianEMRestraint___str__(self)
837 
838 
839  def __repr__(self):
840  """__repr__(GaussianEMRestraint self) -> std::string"""
841  return _IMP_bayesianem.GaussianEMRestraint___repr__(self)
842 
843 
844  @staticmethod
845  def get_from(o):
846  return _object_cast_to_GaussianEMRestraint(o)
847 
848 GaussianEMRestraint_swigregister = _IMP_bayesianem.GaussianEMRestraint_swigregister
849 GaussianEMRestraint_swigregister(GaussianEMRestraint)
850 
851 
852 def get_rmsd_excluding_higher_than(m1, m2, t):
853  """get_rmsd_excluding_higher_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
854  return _IMP_bayesianem.get_rmsd_excluding_higher_than(m1, m2, t)
855 
856 def get_percentage_closer_than(m1, m2, t):
857  """get_percentage_closer_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
858  return _IMP_bayesianem.get_percentage_closer_than(m1, m2, t)
859 
860 def get_transformation_aligning_first_to_second(s1, s2):
861  """get_transformation_aligning_first_to_second(Selection s1, Selection s2) -> Transformation3D"""
862  return _IMP_bayesianem.get_transformation_aligning_first_to_second(s1, s2)
863 
864 def get_rmsd_of_best_population(*args):
865  """
866  get_rmsd_of_best_population(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const percentage) -> double
867  get_rmsd_of_best_population(Selection s1, Selection s2, double const percentage) -> double
868  get_rmsd_of_best_population(IMP::algebra::Vector3Ds const & m1, IMP::algebra::Vector3Ds const & m2, double const percentage) -> double
869  """
870  return _IMP_bayesianem.get_rmsd_of_best_population(*args)
871 
872 def gem_score_cc(model_ps, density_ps):
873  """gem_score_cc(IMP::Particles model_ps, IMP::Particles density_ps) -> double"""
874  return _IMP_bayesianem.gem_score_cc(model_ps, density_ps)
875 
876 def get_grid(arg1):
877  """get_grid(DensityMap arg1) -> DenseDoubleGrid3D"""
878  return _IMP_bayesianem.get_grid(arg1)
879 
880 def get_masked_map(gmm, weights, densitymap, threshold):
881  """get_masked_map(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap densitymap, double threshold) -> DensityMap"""
882  return _IMP_bayesianem.get_masked_map(gmm, weights, densitymap, threshold)
883 
884 def get_sub_map(dm, sub_gmm, gmm):
885  """get_sub_map(DensityMap dm, DensityMap sub_gmm, DensityMap gmm) -> DensityMap"""
886  return _IMP_bayesianem.get_sub_map(dm, sub_gmm, gmm)
887 
888 def get_overlap_fast(gmm, weights, dm, factor=2.5):
889  """
890  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> double
891  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> double
892  """
893  return _IMP_bayesianem.get_overlap_fast(gmm, weights, dm, factor)
894 
895 def get_overlap_binned(gmm, weights, dm, factor=2.5, Nbin=100):
896  """
897  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5, int Nbin=100) -> IMP::algebra::Vector3Ds
898  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> IMP::algebra::Vector3Ds
899  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> IMP::algebra::Vector3Ds
900  """
901  return _IMP_bayesianem.get_overlap_binned(gmm, weights, dm, factor, Nbin)
902 
903 def get_rotation_matrix(x, y):
904  """get_rotation_matrix(Vector3D x, Vector3D y) -> Rotation3D"""
905  return _IMP_bayesianem.get_rotation_matrix(x, y)
906 
907 def sgn(v):
908  """sgn(double v) -> float"""
909  return _IMP_bayesianem.sgn(v)
910 
911 def NormalizePCA(pca, ps):
912  """NormalizePCA(PrincipalComponentAnalysis3D pca, IMP::Particles const & ps) -> PrincipalComponentAnalysis3D"""
913  return _IMP_bayesianem.NormalizePCA(pca, ps)
914 
915 def PCAalign(pca1, pca2):
916  """PCAalign(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2) -> IMP::algebra::Transformation3Ds"""
917  return _IMP_bayesianem.PCAalign(pca1, pca2)
918 
919 def get_module_version():
920  """get_module_version() -> std::string const"""
921  return _IMP_bayesianem.get_module_version()
922 
923 def get_example_path(fname):
924  """get_example_path(std::string fname) -> std::string"""
925  return _IMP_bayesianem.get_example_path(fname)
926 
927 def get_data_path(fname):
928  """get_data_path(std::string fname) -> std::string"""
929  return _IMP_bayesianem.get_data_path(fname)
930 
931 from . import _version_check
932 _version_check.check_version(get_module_version())
933 __version__ = get_module_version()
934 
935 
936 
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::algebra::get_transformation_aligning_first_to_second
IMP::algebra::Transformation3D get_transformation_aligning_first_to_second(const Vector3DsOrXYZs0 &source, const Vector3DsOrXYZs1 &target)
Compute the rigid transform bringing the first point set to the second.
Definition: geometric_alignment.h:45
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:397
IMP::bayesianem::get_grid
DensityGrid get_grid(IMP::em::DensityMap *in)
Return a dense grid containing the voxels of the passed density map.
Definition: bayesianem/utilities.h:174
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::get_indexes
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Get the indexes from a list of particles.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54