CoarseCC.h File Reference

Perform coarse fitting between two density objects. More...

#include <IMP/em/em_config.h>
#include "exp.h"
#include "DensityMap.h"
#include "SampledDensityMap.h"
#include "SurfaceShellDensityMap.h"
#include "def.h"
#include <vector>
#include <IMP/core/rigid_bodies.h>
#include <IMP/Refiner.h>
#include "masking.h"

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Classes
class	IMP::em::CoarseCC
	Responsible for performing coarse fitting between two density objects. More...

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::em
	Basic utilities for handling cryo-electron microscopy 3D density maps.

Functions
double	IMP::em::get_coarse_cc_coefficient (const DensityMap *grid1, const DensityMap *grid2, double grid2_voxel_data_threshold, bool allow_padding=false, FloatPair norm_factors=FloatPair(0., 0.))
	Calculates the cross correlation coefficient between two maps. More...
double	IMP::em::get_coarse_cc_local_coefficient (const DensityMap *em_map, DensityMap *model_map, double voxel_data_threshold)
	Local cross correlation function. More...
double	IMP::em::get_coarse_cc_score (DensityMap *data, SampledDensityMap *model_map, double scalefactor, bool recalc_rms=true, bool resample=true, FloatPair norm_factors=FloatPair(0., 0.))
	Calculates the value of the EM fitting term. More...

Detailed Description

Perform coarse fitting between two density objects.

Copyright 2007-2021 IMP Inventors. All rights reserved.

Definition in file CoarseCC.h.