10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_symmetry')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_symmetry')
25 _IMP_symmetry = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_symmetry', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_symmetry', fp, pathname, description)
43 _IMP_symmetry = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_SYMMETRY_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_SYMMETRY_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_symmetry.delete_IMP_SYMMETRY_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
126 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_value(self)
131 incr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
132 incr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
134 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_incr(self, n)
139 decr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
140 decr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
142 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_distance(self, x)
151 """equal(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
152 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_equal(self, x)
156 """copy(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator"""
157 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_copy(self)
161 """next(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
162 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_next(self)
166 """__next__(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
167 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___next__(self)
171 """previous(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
172 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
177 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
182 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
187 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
192 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
197 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
202 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator
208 __sub__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___sub__(self, *args)
214 IMP_SYMMETRY_SwigPyIterator_swigregister = _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_swigregister
215 IMP_SYMMETRY_SwigPyIterator_swigregister(IMP_SYMMETRY_SwigPyIterator)
223 IMP_DEBUG = _IMP_symmetry.IMP_DEBUG
224 IMP_RELEASE = _IMP_symmetry.IMP_RELEASE
225 IMP_SILENT = _IMP_symmetry.IMP_SILENT
226 IMP_PROGRESS = _IMP_symmetry.IMP_PROGRESS
227 IMP_TERSE = _IMP_symmetry.IMP_TERSE
228 IMP_VERBOSE = _IMP_symmetry.IMP_VERBOSE
229 IMP_MEMORY = _IMP_symmetry.IMP_MEMORY
230 IMP_NONE = _IMP_symmetry.IMP_NONE
231 IMP_USAGE = _IMP_symmetry.IMP_USAGE
232 IMP_INTERNAL = _IMP_symmetry.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_symmetry.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_symmetry.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_symmetry.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_symmetry.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_symmetry.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_symmetry.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_symmetry.IMPKERNEL_SHOW_WARNINGS
245 class _DirectorObjects(object):
246 """@internal Simple class to keep references to director objects
247 to prevent premature deletion."""
250 def register(self, obj):
251 """Take a reference to a director object; will only work for
252 refcounted C++ classes"""
253 if hasattr(obj,
'get_ref_count'):
254 self._objects.append(obj)
256 """Only drop our reference and allow cleanup by Python if no other
257 Python references exist (we hold 3 references: one in self._objects,
258 one in x, and one in the argument list for getrefcount) *and* no
259 other C++ references exist (the Python object always holds one)"""
260 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
261 or x.get_ref_count() > 1]
265 def get_object_count(self):
266 """Get number of director objects (useful for testing only)"""
267 return len(self._objects)
268 _director_objects = _DirectorObjects()
270 class _ostream(object):
271 """Proxy of C++ std::ostream class."""
273 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
275 def __init__(self, *args, **kwargs):
276 raise AttributeError(
"No constructor defined")
277 __repr__ = _swig_repr
279 def write(self, osa_buf):
280 """write(_ostream self, char const * osa_buf)"""
281 return _IMP_symmetry._ostream_write(self, osa_buf)
283 _ostream_swigregister = _IMP_symmetry._ostream_swigregister
284 _ostream_swigregister(_ostream)
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_symmetry.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_symmetry.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_symmetry.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_symmetry.IMP_C_OPEN_BINARY
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_symmetry.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_symmetry.IMPCGAL_SHOW_WARNINGS
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_symmetry.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_symmetry.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_symmetry.IMPALGEBRA_SHOW_WARNINGS
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_symmetry.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_symmetry.IMPDISPLAY_SHOW_WARNINGS
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_symmetry.IMPSCOREFUNCTOR_SHOW_WARNINGS
327 IMP_CORE_HAS_IMP_CGAL = _IMP_symmetry.IMP_CORE_HAS_IMP_CGAL
328 IMP_CORE_HAS_IMP_KERNEL = _IMP_symmetry.IMP_CORE_HAS_IMP_KERNEL
329 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_FILESYSTEM
330 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
331 IMP_CORE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CORE_HAS_BOOST_RANDOM
332 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_SYSTEM
333 IMP_CORE_HAS_CGAL = _IMP_symmetry.IMP_CORE_HAS_CGAL
334 IMP_CORE_HAS_HDF5 = _IMP_symmetry.IMP_CORE_HAS_HDF5
335 IMP_CORE_HAS_NUMPY = _IMP_symmetry.IMP_CORE_HAS_NUMPY
336 IMPCORE_SHOW_WARNINGS = _IMP_symmetry.IMPCORE_SHOW_WARNINGS
338 IMP_SYMMETRY_HAS_IMP_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_CGAL
339 IMP_SYMMETRY_HAS_IMP_DISPLAY = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_DISPLAY
340 IMP_SYMMETRY_HAS_IMP_KERNEL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_KERNEL
341 IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR
342 IMP_SYMMETRY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_FILESYSTEM
343 IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS
344 IMP_SYMMETRY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_RANDOM
345 IMP_SYMMETRY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_SYSTEM
346 IMP_SYMMETRY_HAS_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_CGAL
347 IMP_SYMMETRY_HAS_HDF5 = _IMP_symmetry.IMP_SYMMETRY_HAS_HDF5
348 IMP_SYMMETRY_HAS_NUMPY = _IMP_symmetry.IMP_SYMMETRY_HAS_NUMPY
349 IMP_SYMMETRY_HAS_PYTHON_IHM = _IMP_symmetry.IMP_SYMMETRY_HAS_PYTHON_IHM
350 IMPSYMMETRY_SHOW_WARNINGS = _IMP_symmetry.IMPSYMMETRY_SHOW_WARNINGS
352 _object_types.append(
"BallMover")
355 _object_types.append(
"RigidBodyMover")
358 """Proxy of C++ IMP::symmetry::BallMover class."""
360 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
362 def __init__(self, p, ps, max_tr, ctrs, trs):
363 """__init__(IMP::symmetry::BallMover self, Particle p, IMP::Particles ps, IMP::Float max_tr, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> BallMover"""
364 this = _IMP_symmetry.new_BallMover(p, ps, max_tr, ctrs, trs)
366 self.this.append(this)
367 except __builtin__.Exception:
370 def get_version_info(self):
371 """get_version_info(BallMover self) -> VersionInfo"""
372 return _IMP_symmetry.BallMover_get_version_info(self)
376 """__str__(BallMover self) -> std::string"""
377 return _IMP_symmetry.BallMover___str__(self)
381 """__repr__(BallMover self) -> std::string"""
382 return _IMP_symmetry.BallMover___repr__(self)
387 return _object_cast_to_BallMover(o)
389 BallMover_swigregister = _IMP_symmetry.BallMover_swigregister
390 BallMover_swigregister(BallMover)
393 """Proxy of C++ IMP::symmetry::RigidBodyMover class."""
395 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
397 def __init__(self, d, ps, max_tr, max_ang, ctrs, trs):
398 """__init__(IMP::symmetry::RigidBodyMover self, RigidBody d, IMP::Particles ps, IMP::Float max_tr, IMP::Float max_ang, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> RigidBodyMover"""
399 this = _IMP_symmetry.new_RigidBodyMover(d, ps, max_tr, max_ang, ctrs, trs)
401 self.this.append(this)
402 except __builtin__.Exception:
405 def get_version_info(self):
406 """get_version_info(RigidBodyMover self) -> VersionInfo"""
407 return _IMP_symmetry.RigidBodyMover_get_version_info(self)
411 """__str__(RigidBodyMover self) -> std::string"""
412 return _IMP_symmetry.RigidBodyMover___str__(self)
416 """__repr__(RigidBodyMover self) -> std::string"""
417 return _IMP_symmetry.RigidBodyMover___repr__(self)
422 return _object_cast_to_RigidBodyMover(o)
424 RigidBodyMover_swigregister = _IMP_symmetry.RigidBodyMover_swigregister
425 RigidBodyMover_swigregister(RigidBodyMover)
429 """get_module_version() -> std::string const"""
430 return _IMP_symmetry.get_module_version()
433 """get_example_path(std::string fname) -> std::string"""
434 return _IMP_symmetry.get_example_path(fname)
437 """get_data_path(std::string fname) -> std::string"""
438 return _IMP_symmetry.get_data_path(fname)
440 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
def get_module_version
Return the version of this module, as a string.
def get_example_path
Return the full path to one of this module's example files.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
A base class for classes which perturb particles.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.