10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_rotamer')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_rotamer')
25 _IMP_rotamer = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_rotamer', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_rotamer', fp, pathname, description)
43 _IMP_rotamer = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_ROTAMER_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
126 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)
131 incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
132 incr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
134 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)
139 decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
140 decr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
142 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, x)
151 """equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
152 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, x)
156 """copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
157 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)
161 """next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
162 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)
166 """__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
167 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)
171 """previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
172 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
177 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
182 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
187 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
192 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
197 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
202 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
208 __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
214 IMP_ROTAMER_SwigPyIterator_swigregister = _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister
215 IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)
223 IMP_DEBUG = _IMP_rotamer.IMP_DEBUG
224 IMP_RELEASE = _IMP_rotamer.IMP_RELEASE
225 IMP_SILENT = _IMP_rotamer.IMP_SILENT
226 IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS
227 IMP_TERSE = _IMP_rotamer.IMP_TERSE
228 IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE
229 IMP_MEMORY = _IMP_rotamer.IMP_MEMORY
230 IMP_NONE = _IMP_rotamer.IMP_NONE
231 IMP_USAGE = _IMP_rotamer.IMP_USAGE
232 IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_rotamer.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_rotamer.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_rotamer.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS
245 class _DirectorObjects(object):
246 """@internal Simple class to keep references to director objects
247 to prevent premature deletion."""
250 def register(self, obj):
251 """Take a reference to a director object; will only work for
252 refcounted C++ classes"""
253 if hasattr(obj,
'get_ref_count'):
254 self._objects.append(obj)
256 """Only drop our reference and allow cleanup by Python if no other
257 Python references exist (we hold 3 references: one in self._objects,
258 one in x, and one in the argument list for getrefcount) *and* no
259 other C++ references exist (the Python object always holds one)"""
260 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
261 or x.get_ref_count() > 1]
265 def get_object_count(self):
266 """Get number of director objects (useful for testing only)"""
267 return len(self._objects)
268 _director_objects = _DirectorObjects()
270 class _ostream(object):
271 """Proxy of C++ std::ostream class."""
273 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
275 def __init__(self, *args, **kwargs):
276 raise AttributeError(
"No constructor defined")
277 __repr__ = _swig_repr
279 def write(self, osa_buf):
280 """write(_ostream self, char const * osa_buf)"""
281 return _IMP_rotamer._ostream_write(self, osa_buf)
283 _ostream_swigregister = _IMP_rotamer._ostream_swigregister
284 _ostream_swigregister(_ostream)
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_rotamer.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_rotamer.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_rotamer.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_rotamer.IMP_C_OPEN_BINARY
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_rotamer.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_rotamer.IMPCGAL_SHOW_WARNINGS
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_rotamer.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_rotamer.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS
327 IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL
328 IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL
329 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM
330 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
331 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM
332 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM
333 IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL
334 IMP_CORE_HAS_HDF5 = _IMP_rotamer.IMP_CORE_HAS_HDF5
335 IMP_CORE_HAS_NUMPY = _IMP_rotamer.IMP_CORE_HAS_NUMPY
336 IMPCORE_SHOW_WARNINGS = _IMP_rotamer.IMPCORE_SHOW_WARNINGS
338 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA
339 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL
340 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY
341 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL
342 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
343 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
344 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
345 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM
346 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM
347 IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL
348 IMP_CONTAINER_HAS_HDF5 = _IMP_rotamer.IMP_CONTAINER_HAS_HDF5
349 IMP_CONTAINER_HAS_NUMPY = _IMP_rotamer.IMP_CONTAINER_HAS_NUMPY
350 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_CONTAINER_HAS_PYTHON_IHM
351 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
352 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_ROBIN_MAP
353 IMPCONTAINER_SHOW_WARNINGS = _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS
355 IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL
356 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL
357 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
358 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
359 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM
360 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX
361 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM
362 IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL
363 IMP_ATOM_HAS_HDF5 = _IMP_rotamer.IMP_ATOM_HAS_HDF5
364 IMP_ATOM_HAS_NUMPY = _IMP_rotamer.IMP_ATOM_HAS_NUMPY
365 IMP_ATOM_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ATOM_HAS_PYTHON_IHM
366 IMPATOM_SHOW_WARNINGS = _IMP_rotamer.IMPATOM_SHOW_WARNINGS
367 IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX
368 IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX
369 IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX
370 IMP_CHAIN_TYPE_INDEX = _IMP_rotamer.IMP_CHAIN_TYPE_INDEX
372 IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA
373 IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL
374 IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER
375 IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY
376 IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL
377 IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR
378 IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM
379 IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS
380 IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM
381 IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX
382 IMP_ROTAMER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM
383 IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL
384 IMP_ROTAMER_HAS_HDF5 = _IMP_rotamer.IMP_ROTAMER_HAS_HDF5
385 IMP_ROTAMER_HAS_NUMPY = _IMP_rotamer.IMP_ROTAMER_HAS_NUMPY
386 IMP_ROTAMER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ROTAMER_HAS_PYTHON_IHM
387 IMPROTAMER_SHOW_WARNINGS = _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS
389 RotamerAngleTuples=list
390 _plural_types.append(
"RotamerAngleTuples")
391 _value_types.append(
"RotamerAngleTuple")
395 _plural_types.append(
"ResidueRotamers")
396 _value_types.append(
"ResidueRotamer")
399 _object_types.append(
"RotamerLibrary")
402 def _object_cast_to_RotamerLibrary(o):
403 """_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
404 return _IMP_rotamer._object_cast_to_RotamerLibrary(o)
406 _object_types.append(
"RotamerCalculator")
409 def _object_cast_to_RotamerCalculator(o):
410 """_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
411 return _IMP_rotamer._object_cast_to_RotamerCalculator(o)
412 class RotamerAngleTuple(object):
413 """Proxy of C++ IMP::rotamer::RotamerAngleTuple class."""
415 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
417 def __init__(self, *args):
419 __init__(IMP::rotamer::RotamerAngleTuple self) -> RotamerAngleTuple
420 __init__(IMP::rotamer::RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
422 this = _IMP_rotamer.new_RotamerAngleTuple(*args)
424 self.this.append(this)
425 except __builtin__.Exception:
429 """get_chi1(RotamerAngleTuple self) -> float"""
430 return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)
434 """get_chi2(RotamerAngleTuple self) -> float"""
435 return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)
439 """get_chi3(RotamerAngleTuple self) -> float"""
440 return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)
444 """get_chi4(RotamerAngleTuple self) -> float"""
445 return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)
448 def get_probability(self):
449 """get_probability(RotamerAngleTuple self) -> float"""
450 return _IMP_rotamer.RotamerAngleTuple_get_probability(self)
453 def show(self, *args):
455 show(RotamerAngleTuple self, _ostream out)
456 show(RotamerAngleTuple self)
458 return _IMP_rotamer.RotamerAngleTuple_show(self, *args)
462 """__str__(RotamerAngleTuple self) -> std::string"""
463 return _IMP_rotamer.RotamerAngleTuple___str__(self)
467 """__repr__(RotamerAngleTuple self) -> std::string"""
468 return _IMP_rotamer.RotamerAngleTuple___repr__(self)
470 __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple
471 __del__ =
lambda self:
None
472 RotamerAngleTuple_swigregister = _IMP_rotamer.RotamerAngleTuple_swigregister
473 RotamerAngleTuple_swigregister(RotamerAngleTuple)
476 """Proxy of C++ IMP::rotamer::RotamerLibrary class."""
478 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
480 def __init__(self, angle_step=10):
482 __init__(IMP::rotamer::RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary
483 __init__(IMP::rotamer::RotamerLibrary self) -> RotamerLibrary
485 this = _IMP_rotamer.new_RotamerLibrary(angle_step)
487 self.this.append(this)
488 except __builtin__.Exception:
491 def get_rotamers(self, residue, phi, psi, probability_thr):
492 """get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
493 return _IMP_rotamer.RotamerLibrary_get_rotamers(self, residue, phi, psi, probability_thr)
496 def read_library_file(self, lib_file_name):
497 """read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
498 return _IMP_rotamer.RotamerLibrary_read_library_file(self, lib_file_name)
501 def get_version_info(self):
502 """get_version_info(RotamerLibrary self) -> VersionInfo"""
503 return _IMP_rotamer.RotamerLibrary_get_version_info(self)
507 """__str__(RotamerLibrary self) -> std::string"""
508 return _IMP_rotamer.RotamerLibrary___str__(self)
512 """__repr__(RotamerLibrary self) -> std::string"""
513 return _IMP_rotamer.RotamerLibrary___repr__(self)
518 return _object_cast_to_RotamerLibrary(o)
520 RotamerLibrary_swigregister = _IMP_rotamer.RotamerLibrary_swigregister
521 RotamerLibrary_swigregister(RotamerLibrary)
523 class ResidueRotamer(object):
524 """Proxy of C++ IMP::rotamer::ResidueRotamer class."""
526 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
528 def __init__(self, *args):
530 __init__(IMP::rotamer::ResidueRotamer self, ResidueType rt) -> ResidueRotamer
531 __init__(IMP::rotamer::ResidueRotamer self) -> ResidueRotamer
533 this = _IMP_rotamer.new_ResidueRotamer(*args)
535 self.this.append(this)
536 except __builtin__.Exception:
539 def get_coordinates(self, index, at):
540 """get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
541 return _IMP_rotamer.ResidueRotamer_get_coordinates(self, index, at)
544 def get_number_of_cases(self, at):
545 """get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
546 return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, at)
549 def get_atom_exists(self, at):
550 """get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
551 return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, at)
555 """get_size(ResidueRotamer self) -> unsigned int"""
556 return _IMP_rotamer.ResidueRotamer_get_size(self)
559 def get_probability(self, index):
560 """get_probability(ResidueRotamer self, unsigned int index) -> double"""
561 return _IMP_rotamer.ResidueRotamer_get_probability(self, index)
564 def show(self, *args):
566 show(ResidueRotamer self, _ostream out)
567 show(ResidueRotamer self)
569 return _IMP_rotamer.ResidueRotamer_show(self, *args)
573 """__str__(ResidueRotamer self) -> std::string"""
574 return _IMP_rotamer.ResidueRotamer___str__(self)
578 """__repr__(ResidueRotamer self) -> std::string"""
579 return _IMP_rotamer.ResidueRotamer___repr__(self)
581 __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer
582 __del__ =
lambda self:
None
583 ResidueRotamer_swigregister = _IMP_rotamer.ResidueRotamer_swigregister
584 ResidueRotamer_swigregister(ResidueRotamer)
587 """Proxy of C++ IMP::rotamer::RotamerCalculator class."""
589 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
591 def __init__(self, rl):
592 """__init__(IMP::rotamer::RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
593 this = _IMP_rotamer.new_RotamerCalculator(rl)
595 self.this.append(this)
596 except __builtin__.Exception:
599 def get_rotamer(self, rd, thr):
600 """get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
601 return _IMP_rotamer.RotamerCalculator_get_rotamer(self, rd, thr)
604 def get_version_info(self):
605 """get_version_info(RotamerCalculator self) -> VersionInfo"""
606 return _IMP_rotamer.RotamerCalculator_get_version_info(self)
609 def transform(self, protein, score, thr, K, num_iter):
610 """transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
611 return _IMP_rotamer.RotamerCalculator_transform(self, protein, score, thr, K, num_iter)
615 """__str__(RotamerCalculator self) -> std::string"""
616 return _IMP_rotamer.RotamerCalculator___str__(self)
620 """__repr__(RotamerCalculator self) -> std::string"""
621 return _IMP_rotamer.RotamerCalculator___repr__(self)
626 return _object_cast_to_RotamerCalculator(o)
628 RotamerCalculator_swigregister = _IMP_rotamer.RotamerCalculator_swigregister
629 RotamerCalculator_swigregister(RotamerCalculator)
633 """get_module_version() -> std::string const"""
634 return _IMP_rotamer.get_module_version()
637 """get_example_path(std::string fname) -> std::string"""
638 return _IMP_rotamer.get_example_path(fname)
641 """get_data_path(std::string fname) -> std::string"""
642 return _IMP_rotamer.get_data_path(fname)
644 from .
import _version_check
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_module_version()
Return the version of this module, as a string.
void transform(Hierarchy h, const algebra::Transformation3D &tr)
Transform a hierarchy. This is aware of rigid bodies.
Common base class for heavy weight IMP objects.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.