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IMP Reference Guide  2.14.0
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2020 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_gsl')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_gsl')
25  _IMP_gsl = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
34  except ImportError:
35  import _IMP_gsl
36  return _IMP_gsl
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_gsl = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_gsl
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_GSL_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
126  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
132  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
133  """
134  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
140  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
141  """
142  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
152  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
157  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
162  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
167  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
172  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
177  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
182  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
187  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
192  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
197  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
202  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
208  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
215 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
224 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
225 IMP_SILENT = _IMP_gsl.IMP_SILENT
226 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
227 IMP_TERSE = _IMP_gsl.IMP_TERSE
228 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
229 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
230 IMP_NONE = _IMP_gsl.IMP_NONE
231 IMP_USAGE = _IMP_gsl.IMP_USAGE
232 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_gsl.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_gsl.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_gsl._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_gsl._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_gsl.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_gsl.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
309 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
310 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
311 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
312 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
313 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
314 IMP_GSL_HAS_NUMPY = _IMP_gsl.IMP_GSL_HAS_NUMPY
315 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
316 
317 _object_types.append("GSLOptimizer")
318 
319 
320 def _object_cast_to_GSLOptimizer(o):
321  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
322  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
323 
324 _object_types.append("ConjugateGradients")
325 
326 
327 def _object_cast_to_ConjugateGradients(o):
328  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
329  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
330 
331 _object_types.append("QuasiNewton")
332 
333 
334 def _object_cast_to_QuasiNewton(o):
335  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
336  return _IMP_gsl._object_cast_to_QuasiNewton(o)
337 
338 _object_types.append("Simplex")
339 
340 
341 def _object_cast_to_Simplex(o):
342  """_object_cast_to_Simplex(Object o) -> Simplex"""
343  return _IMP_gsl._object_cast_to_Simplex(o)
344 class GSLOptimizer(IMP.AttributeOptimizer):
345  """Proxy of C++ IMP::gsl::GSLOptimizer class."""
346 
347  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
348 
349  def __init__(self, m):
350  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
351  if self.__class__ == GSLOptimizer:
352  _self = None
353  else:
354  _self = self
355  this = _IMP_gsl.new_GSLOptimizer(_self, m)
356  try:
357  self.this.append(this)
358  except __builtin__.Exception:
359  self.this = this
360 
361  if self.__class__ != GSLOptimizer:
362  _director_objects.register(self)
363 
364 
365 
366  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
367  __del__ = lambda self: None
368 
369  def set_stop_score(self, d):
370  """set_stop_score(GSLOptimizer self, double d)"""
371  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
372 
373 
374  def __str__(self):
375  """__str__(GSLOptimizer self) -> std::string"""
376  return _IMP_gsl.GSLOptimizer___str__(self)
377 
378 
379  def __repr__(self):
380  """__repr__(GSLOptimizer self) -> std::string"""
381  return _IMP_gsl.GSLOptimizer___repr__(self)
382 
383 
384  @staticmethod
385  def get_from(o):
386  return _object_cast_to_GSLOptimizer(o)
387 
388 
389  def get_type_name(self):
390  return self.__class__.__name__
391  def do_show(self, out):
392  pass
393  def get_version_info(self):
394  if"IMP::gsl" == "IMP":
395  return VersionInfo(self.__module__,
396  __import__(self.__module__).get_module_version())
397  else:
398  return IMP.VersionInfo(self.__module__,
399  __import__(self.__module__).get_module_version())
400  @staticmethod
401  def get_from(o):
402  return _object_cast_to_GSLOptimizer(o)
403 
404  def __disown__(self):
405  self.this.disown()
406  _IMP_gsl.disown_GSLOptimizer(self)
407  return weakref_proxy(self)
408 
409  def do_destroy(self):
410  """do_destroy(GSLOptimizer self)"""
411  return _IMP_gsl.GSLOptimizer_do_destroy(self)
412 
413 
414  def handle_set_has_required_score_states(self, arg0):
415  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
416  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
417 
418 
419  def do_get_inputs(self):
420  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
421  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
422 
423 
424  def do_get_outputs(self):
425  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
426  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
427 
428 
429  def do_get_interactions(self):
430  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
431  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
432 
433 
434  def do_optimize(self, ns):
435  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
436  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
437 
438 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
439 GSLOptimizer_swigregister(GSLOptimizer)
440 
441 class ConjugateGradients(GSLOptimizer):
442  """Proxy of C++ IMP::gsl::ConjugateGradients class."""
443 
444  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
445 
446  def __init__(self, m):
447  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
448  this = _IMP_gsl.new_ConjugateGradients(m)
449  try:
450  self.this.append(this)
451  except __builtin__.Exception:
452  self.this = this
453 
454  def set_threshold(self, mg):
455  """set_threshold(ConjugateGradients self, double mg)"""
456  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
457 
458 
459  def do_optimize(self, max_steps):
460  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
461  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
462 
463 
464  def get_version_info(self):
465  """get_version_info(ConjugateGradients self) -> VersionInfo"""
466  return _IMP_gsl.ConjugateGradients_get_version_info(self)
467 
468 
469  def __str__(self):
470  """__str__(ConjugateGradients self) -> std::string"""
471  return _IMP_gsl.ConjugateGradients___str__(self)
472 
473 
474  def __repr__(self):
475  """__repr__(ConjugateGradients self) -> std::string"""
476  return _IMP_gsl.ConjugateGradients___repr__(self)
477 
478 
479  @staticmethod
480  def get_from(o):
481  return _object_cast_to_ConjugateGradients(o)
482 
483 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
484 ConjugateGradients_swigregister(ConjugateGradients)
485 
486 class QuasiNewton(GSLOptimizer):
487  """Proxy of C++ IMP::gsl::QuasiNewton class."""
488 
489  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
490 
491  def __init__(self, m):
492  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
493  this = _IMP_gsl.new_QuasiNewton(m)
494  try:
495  self.this.append(this)
496  except __builtin__.Exception:
497  self.this = this
498 
499  def set_initial_step(self, length):
500  """set_initial_step(QuasiNewton self, double length)"""
501  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
502 
503 
504  def set_line_step(self, d):
505  """set_line_step(QuasiNewton self, double d)"""
506  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
507 
508 
509  def set_minimum_gradient(self, d):
510  """set_minimum_gradient(QuasiNewton self, double d)"""
511  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
512 
513 
514  def do_optimize(self, max_steps):
515  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
516  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
517 
518 
519  def get_version_info(self):
520  """get_version_info(QuasiNewton self) -> VersionInfo"""
521  return _IMP_gsl.QuasiNewton_get_version_info(self)
522 
523 
524  def __str__(self):
525  """__str__(QuasiNewton self) -> std::string"""
526  return _IMP_gsl.QuasiNewton___str__(self)
527 
528 
529  def __repr__(self):
530  """__repr__(QuasiNewton self) -> std::string"""
531  return _IMP_gsl.QuasiNewton___repr__(self)
532 
533 
534  @staticmethod
535  def get_from(o):
536  return _object_cast_to_QuasiNewton(o)
537 
538 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
539 QuasiNewton_swigregister(QuasiNewton)
540 
541 class Simplex(GSLOptimizer):
542  """Proxy of C++ IMP::gsl::Simplex class."""
543 
544  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
545 
546  def __init__(self, m):
547  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
548  this = _IMP_gsl.new_Simplex(m)
549  try:
550  self.this.append(this)
551  except __builtin__.Exception:
552  self.this = this
553 
554  def set_initial_length(self, length):
555  """set_initial_length(Simplex self, double length)"""
556  return _IMP_gsl.Simplex_set_initial_length(self, length)
557 
558 
559  def set_minimum_size(self, d):
560  """set_minimum_size(Simplex self, double d)"""
561  return _IMP_gsl.Simplex_set_minimum_size(self, d)
562 
563 
564  def do_optimize(self, max_steps):
565  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
566  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
567 
568 
569  def get_version_info(self):
570  """get_version_info(Simplex self) -> VersionInfo"""
571  return _IMP_gsl.Simplex_get_version_info(self)
572 
573 
574  def __str__(self):
575  """__str__(Simplex self) -> std::string"""
576  return _IMP_gsl.Simplex___str__(self)
577 
578 
579  def __repr__(self):
580  """__repr__(Simplex self) -> std::string"""
581  return _IMP_gsl.Simplex___repr__(self)
582 
583 
584  @staticmethod
585  def get_from(o):
586  return _object_cast_to_Simplex(o)
587 
588 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
589 Simplex_swigregister(Simplex)
590 
591 
592 def get_module_version():
593  """get_module_version() -> std::string const"""
594  return _IMP_gsl.get_module_version()
595 
596 def get_example_path(fname):
597  """get_example_path(std::string fname) -> std::string"""
598  return _IMP_gsl.get_example_path(fname)
599 
600 def get_data_path(fname):
601  """get_data_path(std::string fname) -> std::string"""
602  return _IMP_gsl.get_data_path(fname)
603 
604 from . import _version_check
605 _version_check.check_version(get_module_version())
606 __version__ = get_module_version()
607 
608 
609 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Version and module information for Objects.
Definition: VersionInfo.h:28
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.