spb: This is the main executable for running sampling using Well-Tempered Ensemble Replica Exchange, based on FRET, yeast two-hybrid and other restraints.
spb_analysis: After running sampling, we need to rescore the final ensemble (all models at 1 K) based on the EM2D score.
spb_cluster: Models are clustered taking their weight into account. Distance threshold-based clustering is performed with a 1.5 nm threshold.
spb_density_perbead: To better localize the protein termini, localization density is calculated per bead per protein for a given cluster.
spb_test_score: Code to output the restraint values of a model. Takes 2 RMFs as input: one containing structural coordinations and another containing ISD values.