IMP Reference Guide
2.14.0
The Integrative Modeling Platform
|
This is the complete list of members for IMP::saxs::Profile, including all inherited members.
add(const Profile *other_profile, double weight=1.0) | IMP::saxs::Profile | |
add(const Vector< Profile * > &profiles, const Vector< double > &weights=Vector< double >()) | IMP::saxs::Profile | |
add_errors() | IMP::saxs::Profile | |
add_noise(double percentage=0.03) | IMP::saxs::Profile | |
add_partial_profiles(const Profile *other_profile, double weight=1.0) | IMP::saxs::Profile | |
add_partial_profiles(const Vector< Profile * > &profiles, const Vector< double > &weights=Vector< double >()) | IMP::saxs::Profile | |
average_radius_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
average_volume_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
background_adjust(double start_q) | IMP::saxs::Profile | |
beam_profile_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
c1_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
c2_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
calculate_I0(const Particles &particles, FormFactorType ff_type=HEAVY_ATOMS) | IMP::saxs::Profile | |
calculate_profile(const Particles &particles, FormFactorType ff_type=HEAVY_ATOMS, bool reciprocal=false) | IMP::saxs::Profile | |
calculate_profile(const Particles &particles1, const Particles &particles2, FormFactorType ff_type=HEAVY_ATOMS) | IMP::saxs::Profile | |
calculate_profile_constant_form_factor(const Particles &particles, double form_factor=1.0) | IMP::saxs::Profile | |
calculate_profile_partial(const Particles &particles, const Vector< double > &surface=Vector< double >(), FormFactorType ff_type=HEAVY_ATOMS) | IMP::saxs::Profile | |
calculate_profile_partial(const Particles &particles1, const Particles &particles2, const Vector< double > &surface1=Vector< double >(), const Vector< double > &surface2=Vector< double >(), FormFactorType ff_type=HEAVY_ATOMS) | IMP::saxs::Profile | |
calculate_profile_reciprocal_partial(const Particles &particles, const Vector< double > &surface=Vector< double >(), FormFactorType ff_type=HEAVY_ATOMS) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
calculate_profile_symmetric(const Particles &particles, unsigned int n, FormFactorType ff_type=HEAVY_ATOMS) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
clear_caches() | IMP::Object | virtual |
copy_errors(const Profile *exp_profile) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
delta_q_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
distribution_2_profile(const RadialDistributionFunction &r_dist) | IMP::saxs::Profile | |
do_destroy() | IMP::Object | protectedvirtual |
downsample(Profile *downsampled_profile, unsigned int point_number) const | IMP::saxs::Profile | |
error_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
experimental_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
ff_table_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
get_average_radius() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_delta_q() const | IMP::saxs::Profile | |
get_error(unsigned int i) const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_errors() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_id() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_intensities() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_intensity(unsigned int i) const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_max_q() const | IMP::saxs::Profile | |
get_min_q() const | IMP::saxs::Profile | |
get_name() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_q(unsigned int i) const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_qs() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
get_type_name() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | virtual |
get_version_info() const | IMP::saxs::Profile | virtual |
get_weight(unsigned int i) const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
id_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
init(unsigned int size=0, unsigned int partial_profiles_size=0) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
intensity_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
is_partial_profile() const (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
is_uniform_sampling() const | IMP::saxs::Profile | |
max_q_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
mean_intensity() const | IMP::saxs::Profile | |
min_q_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
modulation_function_parameter_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | static |
name_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
offset(double c) | IMP::saxs::Profile | |
partial_profiles_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
Profile(const std::string &file_name, bool fit_file=false, double max_q=0.0, int units=1) | IMP::saxs::Profile | |
Profile(double qmin=0.0, double qmax=0.5, double delta=0.005) | IMP::saxs::Profile | |
profile_2_distribution(RadialDistributionFunction &rd, double max_distance) const | IMP::saxs::Profile | |
q_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
q_mapping_ (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protected |
radius_of_gyration(double end_q_rg=1.3) const | IMP::saxs::Profile | |
read_partial_profiles(const std::string &file_name) | IMP::saxs::Profile | |
read_SAXS_file(const std::string &file_name, bool fit_file=false, double max_q=0.0, int units=1) | IMP::saxs::Profile | |
resample(const Profile *exp_profile, Profile *resampled_profile) const | IMP::saxs::Profile | |
scale(double c) | IMP::saxs::Profile | |
set_average_radius(double r) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_average_volume(double v) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_beam_profile(std::string beam_profile_file) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_check_level(CheckLevel l) | IMP::Object | |
set_errors(const Eigen::VectorXf &e) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_ff_table(FormFactorTable *ff_table) | IMP::saxs::Profile | |
set_id(unsigned int id) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_intensities(const Eigen::VectorXf &i) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_intensity(unsigned int i, double iq) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_log_level(LogLevel l) | IMP::Object | |
set_name(std::string name) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_qs(const Eigen::VectorXf &q) (defined in IMP::saxs::Profile) | IMP::saxs::Profile | |
set_was_used(bool tf) const | IMP::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
size() const | IMP::saxs::Profile | |
sum_partial_profiles(double c1, double c2, bool check_cashed=true) | IMP::saxs::Profile | |
write_partial_profiles(const std::string &file_name) const | IMP::saxs::Profile | |
write_SAXS_file(const std::string &file_name, double max_q=0.0) const | IMP::saxs::Profile | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |
~Profile() (defined in IMP::saxs::Profile) | IMP::saxs::Profile | protectedvirtual |