IMP Reference Guide
2.14.0
The Integrative Modeling Platform
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This is the complete list of members for IMP::npctransport::SitesPairScore, including all inherited members.
Argument typedef (defined in IMP::PairScore) | IMP::PairScore | |
clear_caches() | IMP::Object | virtual |
create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | |
do_create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | protectedvirtual |
do_destroy() | IMP::Object | protectedvirtual |
do_get_inputs(Model *m, const ParticleIndexes &pis) const | IMP::npctransport::SitesPairScore | virtual |
evaluate_if_good_index(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | |
IMP::PairScore::evaluate_if_good_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::PairScore | virtual |
evaluate_if_good_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const | IMP::npctransport::SitesPairScore | virtual |
evaluate_index(Model *m, const ParticleIndexPair &p, DerivativeAccumulator *da) const | IMP::npctransport::SitesPairScore | virtual |
IMP::npctransport::LinearInteractionPairScore::evaluate_index(algebra::Sphere3D const &s0, algebra::Sphere3D const &s1, algebra::Sphere3D &ds0, algebra::Sphere3D &ds1, DerivativeAccumulator *da) const | IMP::npctransport::LinearInteractionPairScore | protected |
evaluate_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const | IMP::npctransport::SitesPairScore | virtual |
evaluate_site_contributions(Model *m, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int >, bool >(*contacts_accumulator)) const | IMP::npctransport::SitesPairScore | |
evaluate_site_contributions_with_internal_tables(algebra::Sphere3D const *spheres_table, double const **quaternions_tables, algebra::Sphere3D *sphere_derivatives_table, double **torques_tables, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int >, bool >(*contacts_accumulator)=nullptr) const | IMP::npctransport::SitesPairScore | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_evaluation_cache() const (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | |
get_inputs(Model *m, const ParticleIndexes &pis) const | IMP::ParticleInputs | |
get_k_attraction() const | IMP::npctransport::LinearInteractionPairScore | |
get_k_repulsion() const | IMP::npctransport::LinearInteractionPairScore | |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_parameters() const (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
get_range_attraction() const | IMP::npctransport::LinearInteractionPairScore | |
get_sites_k() const | IMP::npctransport::SitesPairScore | |
get_sites_range() const | IMP::npctransport::SitesPairScore | |
get_type_name() const (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | virtual |
get_version_info() const | IMP::npctransport::SitesPairScore | virtual |
IndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
LinearInteractionPairScore(double k_rep, double range_attr, double k_attr, std::string name="LinearIDPairScore%1%") | IMP::npctransport::LinearInteractionPairScore | |
Modifier typedef (defined in IMP::PairScore) | IMP::PairScore | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
PairScore(std::string name="PairScore %1%") (defined in IMP::PairScore) | IMP::PairScore | |
PassArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
PassIndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
set_check_level(CheckLevel l) | IMP::Object | |
set_k_attraction(double k_attr) | IMP::npctransport::LinearInteractionPairScore | |
set_k_repulsion(double k_rep) | IMP::npctransport::LinearInteractionPairScore | |
set_log_level(LogLevel l) | IMP::Object | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_sites(const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
set_sites0(const algebra::Sphere3Ds &sites0) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
set_sites1(const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
set_was_used(bool tf) const | IMP::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
SitesPairScore(double range, double k, double sigma0_deg, double sigma1_deg, double range_nonspec_attraction, double k_nonspec_attraction, double k_nonspec_repulsion, const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1) | IMP::npctransport::SitesPairScore | |
~LinearInteractionPairScore() (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | protectedvirtual |
~Object() (defined in IMP::Object) | IMP::Object | virtual |
~ParticleInputs() (defined in IMP::ParticleInputs) | IMP::ParticleInputs | protectedvirtual |
~SitesPairScore() (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | protectedvirtual |