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IMP Reference Guide  2.14.0
The Integrative Modeling Platform
IMP::npctransport::Scoring Member List

This is the complete list of members for IMP::npctransport::Scoring, including all inherited members.

add_chain_restraints(FGChain *chain)IMP::npctransport::Scoring
add_custom_restraint(IMP::Restraint *r) (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
add_custom_restraints(IMP::Restraints R) (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
add_interaction(const ::npctransport_proto::Assignment_InteractionAssignment &idata)IMP::npctransport::Scoring
add_restrained_anchor_bead(IMP::Particle *p)IMP::npctransport::Scoring
add_z_bias_restraint(SingletonContainerAdaptor ps, double k)IMP::npctransport::Scoring
add_z_bias_restraint(Particle *p, double k)IMP::npctransport::Scoring
clear_caches()IMP::Objectvirtual
clear_custom_restraints() (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
create_backbone_restraint(double rest_length_factor, double backbone_k, ParticlesTemp beads, std::string name) const IMP::npctransport::Scoring
create_bounding_volume_restraint(SingletonContainerAdaptor beads) const IMP::npctransport::Scoring
create_close_beads_container(SingletonContainerAdaptor non_optimiziable_beads, SingletonContainerAdaptor optimizable_beads) const IMP::npctransport::Scoring
create_close_beads_container(ParticleIndexes non_optimizable_beads, SingletonContainerAdaptor optimizable_beads) const IMP::npctransport::Scoring
create_predicates_pair_restraint(PairContainer *bead_pairs, bool is_attr_interactions_on=true) const IMP::npctransport::Scoring
create_slab_restraint(SingletonContainerAdaptor beads) const IMP::npctransport::Scoring
create_z_bias_restraint(SingletonContainerAdaptor ps, double k) const IMP::npctransport::Scoring
do_destroy()IMP::Objectprotectedvirtual
get_all_chain_restraints() const IMP::npctransport::Scoring
get_bounding_volume_restraint(bool update=false)IMP::npctransport::Scoring
get_chain_restraints_on(SingletonContainerAdaptor beads) const IMP::npctransport::Scoring
get_check_level() const (defined in IMP::Object)IMP::Object
get_close_beads_container(bool update=false)IMP::npctransport::Scoring
get_custom_restraints() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_custom_scoring_function(const RestraintsTemp &extra_restraints, SingletonContainerAdaptor non_optimizable_beads, SingletonContainerAdaptor optimizable_beads, bool is_attr_interactions_on=true) const IMP::npctransport::Scoring
get_custom_scoring_function(const RestraintsTemp &extra_restraints, ParticleIndexes non_optimizable_beads, SingletonContainerAdaptor optimizable_beads, bool is_attr_interactions_on=true) const IMP::npctransport::Scoring
get_default_backbone_k() const IMP::npctransport::Scoring
get_excluded_volume_k() const IMP::npctransport::Scoring
get_fg_chains()IMP::npctransport::Scoring
get_has_bounding_box() const IMP::npctransport::Scoring
get_has_bounding_sphere() const IMP::npctransport::Scoring
get_has_bounding_volume() const IMP::npctransport::Scoring
get_interaction_k() const IMP::npctransport::Scoring
get_interaction_range_for(core::ParticleType t1, core::ParticleType t2, bool site_specific=true, bool non_specific=false) const IMP::npctransport::Scoring
get_is_backbone_harmonic() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_log_level() const (defined in IMP::Object)IMP::Object
get_model()IMP::npctransport::Scoring
get_model() const IMP::npctransport::Scoring
get_name() const (defined in IMP::Object)IMP::Object
get_ordered_type_pair_predicate() (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_ordered_type_pair_predicate() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_pore_radius_restraint() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_predicate_pair_score(core::ParticleType t1, core::ParticleType t2) const IMP::npctransport::Scoring
get_predicate_pair_score(core::ParticleType t1, core::ParticleType t2)IMP::npctransport::Scoring
get_predicates_pair_restraint(bool update=false)IMP::npctransport::Scoring
get_range() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoring
get_scoring_function(bool force_update=false)IMP::npctransport::Scoring
get_scoring_function_restraints(bool force_update=false)IMP::npctransport::Scoring
get_sd()IMP::npctransport::Scoring
get_sd() const IMP::npctransport::Scoring
get_site_interactions_statistics(ParticleIndex pi1, ParticleIndex pi2) const IMP::npctransport::Scoring
get_site_interactions_statistics(Particle const *p1, Particle const *p2) const IMP::npctransport::Scoring
get_slab_restraint(bool update=false)IMP::npctransport::Scoring
get_type_name() const (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoringvirtual
get_version_info() const IMP::npctransport::Scoringvirtual
get_z_bias_restraints()IMP::npctransport::Scoring
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
remove_particle_type(core::ParticleType pt)IMP::npctransport::Scoring
Scoring(SimulationData *owner_sd, const ::npctransport_proto::Assignment &data)IMP::npctransport::Scoring
set_check_level(CheckLevel l)IMP::Object
set_interaction_k_factor(IMP::core::ParticleType type, double value)IMP::npctransport::Scoring
set_interaction_range_factor(IMP::core::ParticleType type, double value)IMP::npctransport::Scoring
set_log_level(LogLevel l)IMP::Object
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_was_used(bool tf) const IMP::Object
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
~Object() (defined in IMP::Object)IMP::Objectvirtual
~Scoring() (defined in IMP::npctransport::Scoring)IMP::npctransport::Scoringprotectedvirtual