| BipartitePairsStatisticsOptimizerState(IMP::npctransport::Statistics *statistics_manager, InteractionType interaction_type, const ParticlesTemp &particlesI, const ParticlesTemp &particlesII, double contact_range=1.0, double slack=1.0) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| clear_caches() | IMP::Object | virtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs() const | IMP::OptimizerState | protectedvirtual |
| do_get_interactions() const | IMP::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::OptimizerState | protectedvirtual |
| do_set_is_optimizing(bool) (defined in IMP::OptimizerState) | IMP::OptimizerState | protectedvirtual |
| do_update(unsigned int call_num) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | protectedvirtual |
| get_average_fraction_bound_particle_sites_I() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_fraction_bound_particle_sites_II() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_fraction_bound_particles_I() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_fraction_bound_particles_II() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_fraction_nonspecific_interactions_I() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_fraction_nonspecific_interactions_II() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_number_of_contacts() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_off_per_bound_I_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_off_per_bound_II_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_off_per_contact_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_on_per_missing_contact_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_on_per_unbound_I_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_average_on_per_unbound_II_per_ns() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_has_dependencies() const | IMP::ModelObject | |
| get_has_required_score_states() const | IMP::ModelObject | |
| get_inputs() const | IMP::ModelObject | |
| get_interaction_type() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_interactions() const | IMP::ModelObject | |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_misc_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_number_of_particles_1() | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_number_of_particles_2() | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_number_of_updates() const | IMP::OptimizerState | |
| get_off_I_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_off_II_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_off_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_on_I_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_on_II_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_on_stats_period_ns() const (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | |
| get_optimizer() const (defined in IMP::OptimizerState) | IMP::OptimizerState | |
| get_outputs() const | IMP::ModelObject | |
| get_period() const | IMP::OptimizerState | |
| get_required_score_states() const | IMP::ModelObject | |
| get_type_name() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | virtual |
| get_version_info() const | IMP::npctransport::BipartitePairsStatisticsOptimizerState | virtual |
| handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
| ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| OptimizerState(Model *m, std::string name) | IMP::OptimizerState | |
| reset() | IMP::npctransport::BipartitePairsStatisticsOptimizerState | virtual |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_has_dependencies(bool tf) | IMP::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::ModelObject | |
| set_is_optimizing(bool) | IMP::OptimizerState | virtual |
| set_log_level(LogLevel l) | IMP::Object | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_number_of_updates(unsigned int n) | IMP::OptimizerState | |
| set_period(unsigned int p) | IMP::OptimizerState | |
| set_was_used(bool tf) const | IMP::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
| update() | IMP::OptimizerState | virtual |
| update_always() | IMP::OptimizerState | |
| ~BipartitePairsStatisticsOptimizerState() (defined in IMP::npctransport::BipartitePairsStatisticsOptimizerState) | IMP::npctransport::BipartitePairsStatisticsOptimizerState | protectedvirtual |
| ~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
