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IMP Reference Guide  2.14.0
The Integrative Modeling Platform
IMP::kinematics::ProteinKinematics Member List

This is the complete list of members for IMP::kinematics::ProteinKinematics, including all inherited members.

add_dihedral_joint(const atom::Residue r, ProteinAngleType angle_type, const atom::Atoms &atoms) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
add_dihedral_joints(const std::vector< atom::Residue > &residues, ProteinAngleType angle_type, const std::vector< atom::Atoms > &dihedral_angles) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
build_rigid_bodies()IMP::kinematics::ProteinKinematics
build_topology_graph() (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
clear_caches()IMP::Objectvirtual
do_destroy()IMP::Objectprotectedvirtual
get_check_level() const (defined in IMP::Object)IMP::Object
get_chi1_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_chi2_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_chi3_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_chi4_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_chi5_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_joint(const atom::Residue r, ProteinAngleType angle) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_joints()IMP::kinematics::ProteinKinematics
get_kinematic_forest()IMP::kinematics::ProteinKinematics
get_log_level() const (defined in IMP::Object)IMP::Object
get_loop_joints() (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_name() const (defined in IMP::Object)IMP::Object
get_ordered_joints()IMP::kinematics::ProteinKinematics
get_other_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_phi(const atom::Residue r) const IMP::kinematics::ProteinKinematics
get_phi_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_psi(const atom::Residue r) const IMP::kinematics::ProteinKinematics
get_psi_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
get_rigid_bodies()IMP::kinematics::ProteinKinematics
get_type_name() const (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematicsvirtual
get_version_info() const IMP::kinematics::ProteinKinematicsvirtual
mark_rotatable_angle(const std::vector< atom::Atom > &dihedral_angle)IMP::kinematics::ProteinKinematics
mark_rotatable_angles(const std::vector< atom::Atoms > &dihedral_angles)IMP::kinematics::ProteinKinematics
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
open_loop(atom::Atoms open_loop_bond_atoms) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
order_rigid_bodies(const std::vector< atom::Atoms > &dihedral_angles, const std::vector< atom::Atoms > &phi_angles, const std::vector< atom::Atoms > &psi_angles, const std::vector< atom::Atoms > &chi1_angles, const std::vector< atom::Atoms > &chi2_angles, const std::vector< atom::Atoms > &chi3_angles, const std::vector< atom::Atoms > &chi4_angles, const std::vector< atom::Atoms > &chi5_angles, atom::Atoms open_loop_bond_atoms) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
ProteinKinematics(atom::Hierarchy mhd, bool flexible_backbone=true, bool flexible_side_chains=false)IMP::kinematics::ProteinKinematics
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const ParticleIndexQuads custom_dihedral_angles, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false)IMP::kinematics::ProteinKinematics
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const std::vector< atom::Atoms > &custom_dihedral_atoms, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false)IMP::kinematics::ProteinKinematics
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const ParticleIndexQuads custom_dihedral_angles, const std::vector< ProteinAngleType > &custom_dihedral_angle_types, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false)IMP::kinematics::ProteinKinematics
set_check_level(CheckLevel l)IMP::Object
set_log_level(LogLevel l)IMP::Object
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_phi(const atom::Residue r, double angle) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
set_psi(const atom::Residue r, double angle) (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematics
set_was_used(bool tf) const IMP::Object
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
~Object() (defined in IMP::Object)IMP::Objectvirtual
~ProteinKinematics() (defined in IMP::kinematics::ProteinKinematics)IMP::kinematics::ProteinKinematicsprotectedvirtual