IMP Reference Guide
2.14.0
The Integrative Modeling Platform
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This is the complete list of members for IMP::kinematics::ProteinKinematics, including all inherited members.
add_dihedral_joint(const atom::Residue r, ProteinAngleType angle_type, const atom::Atoms &atoms) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
add_dihedral_joints(const std::vector< atom::Residue > &residues, ProteinAngleType angle_type, const std::vector< atom::Atoms > &dihedral_angles) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
build_rigid_bodies() | IMP::kinematics::ProteinKinematics | |
build_topology_graph() (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
clear_caches() | IMP::Object | virtual |
do_destroy() | IMP::Object | protectedvirtual |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_chi1_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_chi2_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_chi3_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_chi4_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_chi5_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_joint(const atom::Residue r, ProteinAngleType angle) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_joints() | IMP::kinematics::ProteinKinematics | |
get_kinematic_forest() | IMP::kinematics::ProteinKinematics | |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_loop_joints() (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_ordered_joints() | IMP::kinematics::ProteinKinematics | |
get_other_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_phi(const atom::Residue r) const | IMP::kinematics::ProteinKinematics | |
get_phi_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_psi(const atom::Residue r) const | IMP::kinematics::ProteinKinematics | |
get_psi_joint(const atom::Residue r) const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
get_rigid_bodies() | IMP::kinematics::ProteinKinematics | |
get_type_name() const (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | virtual |
get_version_info() const | IMP::kinematics::ProteinKinematics | virtual |
mark_rotatable_angle(const std::vector< atom::Atom > &dihedral_angle) | IMP::kinematics::ProteinKinematics | |
mark_rotatable_angles(const std::vector< atom::Atoms > &dihedral_angles) | IMP::kinematics::ProteinKinematics | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
open_loop(atom::Atoms open_loop_bond_atoms) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
order_rigid_bodies(const std::vector< atom::Atoms > &dihedral_angles, const std::vector< atom::Atoms > &phi_angles, const std::vector< atom::Atoms > &psi_angles, const std::vector< atom::Atoms > &chi1_angles, const std::vector< atom::Atoms > &chi2_angles, const std::vector< atom::Atoms > &chi3_angles, const std::vector< atom::Atoms > &chi4_angles, const std::vector< atom::Atoms > &chi5_angles, atom::Atoms open_loop_bond_atoms) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
ProteinKinematics(atom::Hierarchy mhd, bool flexible_backbone=true, bool flexible_side_chains=false) | IMP::kinematics::ProteinKinematics | |
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const ParticleIndexQuads custom_dihedral_angles, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false) | IMP::kinematics::ProteinKinematics | |
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const std::vector< atom::Atoms > &custom_dihedral_atoms, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false) | IMP::kinematics::ProteinKinematics | |
ProteinKinematics(atom::Hierarchy mhd, const atom::Residues &flexible_residues, const ParticleIndexQuads custom_dihedral_angles, const std::vector< ProteinAngleType > &custom_dihedral_angle_types, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false) | IMP::kinematics::ProteinKinematics | |
set_check_level(CheckLevel l) | IMP::Object | |
set_log_level(LogLevel l) | IMP::Object | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_phi(const atom::Residue r, double angle) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
set_psi(const atom::Residue r, double angle) (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | |
set_was_used(bool tf) const | IMP::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |
~ProteinKinematics() (defined in IMP::kinematics::ProteinKinematics) | IMP::kinematics::ProteinKinematics | protectedvirtual |