add_particle(Particle *obj) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
add_particles(const Particles &objs) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | |
clear_caches() | IMP::Object | virtual |
clear_particles() (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
create_current_decomposition() const | IMP::Restraint | |
create_decomposition() const | IMP::Restraint | |
create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
do_add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | protectedvirtual |
do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
do_create_decomposition() const | IMP::Restraint | protectedvirtual |
do_destroy() | IMP::Object | protectedvirtual |
do_get_inputs() const | IMP::em::FitRestraint | virtual |
do_get_interactions() const | IMP::ModelObject | protectedvirtual |
do_get_outputs() const | IMP::Restraint | protectedvirtual |
FitRestraint(ParticlesTemp ps, DensityMap *em_map, FloatPair norm_factors=FloatPair(0., 0.), FloatKey weight_key=atom::Mass::get_mass_key(), float scale=1, bool use_rigid_bodies=true, KernelType kt=GAUSSIAN) | IMP::em::FitRestraint | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_dynamic_info() const | IMP::Restraint | virtual |
get_has_dependencies() const | IMP::ModelObject | |
get_has_particles() (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
get_has_required_score_states() const | IMP::ModelObject | |
get_inputs() const | IMP::ModelObject | |
get_interactions() const | IMP::ModelObject | |
get_last_score() const | IMP::Restraint | virtual |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
get_model_dens_map() const | IMP::em::FitRestraint | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_number_of_particles() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
get_outputs() const | IMP::ModelObject | |
get_particle(unsigned int i) const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
get_particles() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
get_required_score_states() const | IMP::ModelObject | |
get_scale_factor() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
get_score() const | IMP::Restraint | |
get_static_info() const | IMP::Restraint | virtual |
get_type_name() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | virtual |
get_version_info() const | IMP::em::FitRestraint | virtual |
get_was_good() const | IMP::Restraint | |
get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
remove_particle(Particle *d) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
remove_particles(const Particles &d) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
reserve_particles(unsigned int sz) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
Restraint(Model *m, std::string name) | IMP::Restraint | |
set_check_level(CheckLevel l) | IMP::Object | |
set_has_dependencies(bool tf) | IMP::ModelObject | |
set_has_required_score_states(bool tf) | IMP::ModelObject | |
set_log_level(LogLevel l) | IMP::Object | |
set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_particles(const Particles &ps) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
set_particles_order(const Particles &objs) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
set_scale_factor(float scale) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
set_was_used(bool tf) const | IMP::Object | |
set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
unprotected_evaluate(IMP::DerivativeAccumulator *accum) const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | virtual |
~FitRestraint() (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | protectedvirtual |
~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |