add_close_pair_score(PairScore *ps, double distance, const ParticlesTemp &particles, const PairPredicates &filters) | IMP::core::IncrementalScoringFunction | |
add_close_pair_score(PairScore *ps, double distance, const ParticlesTemp &particles) (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
clear_caches() | IMP::Object | virtual |
clear_close_pair_scores() (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
create_restraints() const | IMP::core::IncrementalScoringFunction | virtual |
do_add_score_and_derivatives(IMP::ScoreAccumulator sa, const ScoreStatesTemp &ss) | IMP::core::IncrementalScoringFunction | virtual |
do_destroy() | IMP::Object | protectedvirtual |
do_get_inputs() const | IMP::core::IncrementalScoringFunction | virtual |
do_get_interactions() const | IMP::ModelObject | protectedvirtual |
do_get_outputs() const | IMP::ScoringFunction | virtual |
evaluate(bool derivatives) | IMP::ScoringFunction | |
evaluate_if_below(bool derivatives, double max) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | |
evaluate_if_good(bool derivatives) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_had_good_score() const | IMP::ScoringFunction | |
get_has_dependencies() const | IMP::ModelObject | |
get_has_required_score_states() const | IMP::ModelObject | |
get_inputs() const | IMP::ModelObject | |
get_interactions() const | IMP::ModelObject | |
get_last_score() const | IMP::ScoringFunction | |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
get_movable_indexes() const (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_outputs() const | IMP::ModelObject | |
get_required_score_states() const | IMP::ModelObject | |
get_score_accumulator(bool deriv) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | protected |
get_score_accumulator_if_below(bool deriv, double max) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | protected |
get_score_accumulator_if_good(bool deriv) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | protected |
get_type_name() const (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | virtual |
get_version_info() const | IMP::core::IncrementalScoringFunction | virtual |
handle_set_has_required_score_states(bool) | IMP::core::IncrementalScoringFunction | virtual |
IncrementalScoringFunction(Model *m, const ParticleIndexes &to_move, const RestraintsTemp &rs, double weight=1.0, double max=NO_MAX, std::string name="IncrementalScoringFunction%1%") | IMP::core::IncrementalScoringFunction | |
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
reset_moved_particles() | IMP::core::IncrementalScoringFunction | |
ScoreIsGoodPair typedef (defined in IMP::ScoringFunction) | IMP::ScoringFunction | |
ScoringFunction(Model *m, std::string name) (defined in IMP::ScoringFunction) | IMP::ScoringFunction | |
set_check_level(CheckLevel l) | IMP::Object | |
set_has_dependencies(bool tf) | IMP::ModelObject | |
set_has_required_score_states(bool tf) | IMP::ModelObject | |
set_log_level(LogLevel l) | IMP::Object | |
set_moved_particles(const ParticleIndexes &p) | IMP::core::IncrementalScoringFunction | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_was_used(bool tf) const | IMP::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
~IncrementalScoringFunction() (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | protectedvirtual |
~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |