10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_scratch')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_scratch')
25 _IMP_scratch = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_scratch', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_scratch', fp, pathname, description)
43 _IMP_scratch = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_SCRATCH_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_SCRATCH_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_scratch.delete_IMP_SCRATCH_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
126 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_value(self)
131 incr(IMP_SCRATCH_SwigPyIterator self, size_t n=1) -> IMP_SCRATCH_SwigPyIterator
132 incr(IMP_SCRATCH_SwigPyIterator self) -> IMP_SCRATCH_SwigPyIterator
134 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_incr(self, n)
139 decr(IMP_SCRATCH_SwigPyIterator self, size_t n=1) -> IMP_SCRATCH_SwigPyIterator
140 decr(IMP_SCRATCH_SwigPyIterator self) -> IMP_SCRATCH_SwigPyIterator
142 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_distance(self, x)
151 """equal(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
152 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_equal(self, x)
156 """copy(IMP_SCRATCH_SwigPyIterator self) -> IMP_SCRATCH_SwigPyIterator"""
157 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_copy(self)
161 """next(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
162 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_next(self)
166 """__next__(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
167 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___next__(self)
171 """previous(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
172 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
177 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
182 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
187 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
192 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
197 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
202 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator
208 __sub__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___sub__(self, *args)
214 IMP_SCRATCH_SwigPyIterator_swigregister = _IMP_scratch.IMP_SCRATCH_SwigPyIterator_swigregister
215 IMP_SCRATCH_SwigPyIterator_swigregister(IMP_SCRATCH_SwigPyIterator)
223 IMP_DEBUG = _IMP_scratch.IMP_DEBUG
224 IMP_RELEASE = _IMP_scratch.IMP_RELEASE
225 IMP_SILENT = _IMP_scratch.IMP_SILENT
226 IMP_PROGRESS = _IMP_scratch.IMP_PROGRESS
227 IMP_TERSE = _IMP_scratch.IMP_TERSE
228 IMP_VERBOSE = _IMP_scratch.IMP_VERBOSE
229 IMP_MEMORY = _IMP_scratch.IMP_MEMORY
230 IMP_NONE = _IMP_scratch.IMP_NONE
231 IMP_USAGE = _IMP_scratch.IMP_USAGE
232 IMP_INTERNAL = _IMP_scratch.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_scratch.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_scratch.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_scratch.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_scratch.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_scratch.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_scratch.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_scratch.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_scratch.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_scratch.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_scratch.IMPKERNEL_SHOW_WARNINGS
245 class _DirectorObjects(object):
246 """@internal Simple class to keep references to director objects
247 to prevent premature deletion."""
250 def register(self, obj):
251 """Take a reference to a director object; will only work for
252 refcounted C++ classes"""
253 if hasattr(obj,
'get_ref_count'):
254 self._objects.append(obj)
256 """Only drop our reference and allow cleanup by Python if no other
257 Python references exist (we hold 3 references: one in self._objects,
258 one in x, and one in the argument list for getrefcount) *and* no
259 other C++ references exist (the Python object always holds one)"""
260 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
261 or x.get_ref_count() > 1]
265 def get_object_count(self):
266 """Get number of director objects (useful for testing only)"""
267 return len(self._objects)
268 _director_objects = _DirectorObjects()
270 class _ostream(object):
271 """Proxy of C++ std::ostream class."""
273 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
275 def __init__(self, *args, **kwargs):
276 raise AttributeError(
"No constructor defined")
277 __repr__ = _swig_repr
279 def write(self, osa_buf):
280 """write(_ostream self, char const * osa_buf)"""
281 return _IMP_scratch._ostream_write(self, osa_buf)
283 _ostream_swigregister = _IMP_scratch._ostream_swigregister
284 _ostream_swigregister(_ostream)
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_scratch.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_scratch.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_scratch.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_scratch.IMP_C_OPEN_BINARY
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_scratch.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_scratch.IMPCGAL_SHOW_WARNINGS
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_scratch.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_scratch.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_scratch.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_scratch.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_scratch.IMPALGEBRA_SHOW_WARNINGS
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_scratch.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_scratch.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_scratch.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_scratch.IMPDISPLAY_SHOW_WARNINGS
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_scratch.IMPSCOREFUNCTOR_SHOW_WARNINGS
327 IMP_CORE_HAS_IMP_CGAL = _IMP_scratch.IMP_CORE_HAS_IMP_CGAL
328 IMP_CORE_HAS_IMP_KERNEL = _IMP_scratch.IMP_CORE_HAS_IMP_KERNEL
329 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CORE_HAS_BOOST_FILESYSTEM
330 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
331 IMP_CORE_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CORE_HAS_BOOST_RANDOM
332 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_CORE_HAS_BOOST_SYSTEM
333 IMP_CORE_HAS_CGAL = _IMP_scratch.IMP_CORE_HAS_CGAL
334 IMP_CORE_HAS_HDF5 = _IMP_scratch.IMP_CORE_HAS_HDF5
335 IMP_CORE_HAS_NUMPY = _IMP_scratch.IMP_CORE_HAS_NUMPY
336 IMPCORE_SHOW_WARNINGS = _IMP_scratch.IMPCORE_SHOW_WARNINGS
338 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_scratch.IMP_CONTAINER_HAS_IMP_ALGEBRA
339 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_scratch.IMP_CONTAINER_HAS_IMP_CGAL
340 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_scratch.IMP_CONTAINER_HAS_IMP_DISPLAY
341 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_scratch.IMP_CONTAINER_HAS_IMP_KERNEL
342 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_scratch.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
343 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
344 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
345 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_RANDOM
346 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_SYSTEM
347 IMP_CONTAINER_HAS_CGAL = _IMP_scratch.IMP_CONTAINER_HAS_CGAL
348 IMP_CONTAINER_HAS_HDF5 = _IMP_scratch.IMP_CONTAINER_HAS_HDF5
349 IMP_CONTAINER_HAS_NUMPY = _IMP_scratch.IMP_CONTAINER_HAS_NUMPY
350 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_scratch.IMP_CONTAINER_HAS_PYTHON_IHM
351 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_scratch.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
352 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_scratch.IMP_CONTAINER_HAS_ROBIN_MAP
353 IMPCONTAINER_SHOW_WARNINGS = _IMP_scratch.IMPCONTAINER_SHOW_WARNINGS
355 IMP_SCRATCH_HAS_IMP_ALGEBRA = _IMP_scratch.IMP_SCRATCH_HAS_IMP_ALGEBRA
356 IMP_SCRATCH_HAS_IMP_CGAL = _IMP_scratch.IMP_SCRATCH_HAS_IMP_CGAL
357 IMP_SCRATCH_HAS_IMP_DISPLAY = _IMP_scratch.IMP_SCRATCH_HAS_IMP_DISPLAY
358 IMP_SCRATCH_HAS_IMP_KERNEL = _IMP_scratch.IMP_SCRATCH_HAS_IMP_KERNEL
359 IMP_SCRATCH_HAS_IMP_SCORE_FUNCTOR = _IMP_scratch.IMP_SCRATCH_HAS_IMP_SCORE_FUNCTOR
360 IMP_SCRATCH_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_FILESYSTEM
361 IMP_SCRATCH_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_PROGRAMOPTIONS
362 IMP_SCRATCH_HAS_BOOST_RANDOM = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_RANDOM
363 IMP_SCRATCH_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_SYSTEM
364 IMP_SCRATCH_HAS_CGAL = _IMP_scratch.IMP_SCRATCH_HAS_CGAL
365 IMP_SCRATCH_HAS_HDF5 = _IMP_scratch.IMP_SCRATCH_HAS_HDF5
366 IMP_SCRATCH_HAS_NUMPY = _IMP_scratch.IMP_SCRATCH_HAS_NUMPY
367 IMP_SCRATCH_HAS_PYTHON_IHM = _IMP_scratch.IMP_SCRATCH_HAS_PYTHON_IHM
368 IMPSCRATCH_SHOW_WARNINGS = _IMP_scratch.IMPSCRATCH_SHOW_WARNINGS
371 """get_module_version() -> std::string const"""
372 return _IMP_scratch.get_module_version()
375 """get_example_path(std::string fname) -> std::string"""
376 return _IMP_scratch.get_example_path(fname)
379 """get_data_path(std::string fname) -> std::string"""
380 return _IMP_scratch.get_data_path(fname)
382 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
def get_module_version
Return the version of this module, as a string.
def get_example_path
Return the full path to one of this module's example files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.