10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_pmi1')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_pmi1')
25 _IMP_pmi1 = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_pmi1', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_pmi1', fp, pathname, description)
43 _IMP_pmi1 = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_PMI1_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_PMI1_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_pmi1.delete_IMP_PMI1_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_PMI1_SwigPyIterator self) -> PyObject *"""
126 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_value(self)
131 incr(IMP_PMI1_SwigPyIterator self, size_t n=1) -> IMP_PMI1_SwigPyIterator
132 incr(IMP_PMI1_SwigPyIterator self) -> IMP_PMI1_SwigPyIterator
134 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_incr(self, n)
139 decr(IMP_PMI1_SwigPyIterator self, size_t n=1) -> IMP_PMI1_SwigPyIterator
140 decr(IMP_PMI1_SwigPyIterator self) -> IMP_PMI1_SwigPyIterator
142 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_PMI1_SwigPyIterator self, IMP_PMI1_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_distance(self, x)
151 """equal(IMP_PMI1_SwigPyIterator self, IMP_PMI1_SwigPyIterator x) -> bool"""
152 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_equal(self, x)
156 """copy(IMP_PMI1_SwigPyIterator self) -> IMP_PMI1_SwigPyIterator"""
157 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_copy(self)
161 """next(IMP_PMI1_SwigPyIterator self) -> PyObject *"""
162 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_next(self)
166 """__next__(IMP_PMI1_SwigPyIterator self) -> PyObject *"""
167 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___next__(self)
171 """previous(IMP_PMI1_SwigPyIterator self) -> PyObject *"""
172 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_PMI1_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI1_SwigPyIterator"""
177 return _IMP_pmi1.IMP_PMI1_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_PMI1_SwigPyIterator self, IMP_PMI1_SwigPyIterator x) -> bool"""
182 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_PMI1_SwigPyIterator self, IMP_PMI1_SwigPyIterator x) -> bool"""
187 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_PMI1_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI1_SwigPyIterator"""
192 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_PMI1_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI1_SwigPyIterator"""
197 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_PMI1_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI1_SwigPyIterator"""
202 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_PMI1_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI1_SwigPyIterator
208 __sub__(IMP_PMI1_SwigPyIterator self, IMP_PMI1_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_pmi1.IMP_PMI1_SwigPyIterator___sub__(self, *args)
214 IMP_PMI1_SwigPyIterator_swigregister = _IMP_pmi1.IMP_PMI1_SwigPyIterator_swigregister
215 IMP_PMI1_SwigPyIterator_swigregister(IMP_PMI1_SwigPyIterator)
223 IMP_DEBUG = _IMP_pmi1.IMP_DEBUG
224 IMP_RELEASE = _IMP_pmi1.IMP_RELEASE
225 IMP_SILENT = _IMP_pmi1.IMP_SILENT
226 IMP_PROGRESS = _IMP_pmi1.IMP_PROGRESS
227 IMP_TERSE = _IMP_pmi1.IMP_TERSE
228 IMP_VERBOSE = _IMP_pmi1.IMP_VERBOSE
229 IMP_MEMORY = _IMP_pmi1.IMP_MEMORY
230 IMP_NONE = _IMP_pmi1.IMP_NONE
231 IMP_USAGE = _IMP_pmi1.IMP_USAGE
232 IMP_INTERNAL = _IMP_pmi1.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_pmi1.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_pmi1.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pmi1.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pmi1.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_pmi1.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pmi1.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pmi1.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pmi1.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_pmi1.IMPKERNEL_SHOW_WARNINGS
245 class _DirectorObjects(object):
246 """@internal Simple class to keep references to director objects
247 to prevent premature deletion."""
250 def register(self, obj):
251 """Take a reference to a director object; will only work for
252 refcounted C++ classes"""
253 if hasattr(obj,
'get_ref_count'):
254 self._objects.append(obj)
256 """Only drop our reference and allow cleanup by Python if no other
257 Python references exist (we hold 3 references: one in self._objects,
258 one in x, and one in the argument list for getrefcount) *and* no
259 other C++ references exist (the Python object always holds one)"""
260 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
261 or x.get_ref_count() > 1]
265 def get_object_count(self):
266 """Get number of director objects (useful for testing only)"""
267 return len(self._objects)
268 _director_objects = _DirectorObjects()
270 class _ostream(object):
271 """Proxy of C++ std::ostream class."""
273 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
275 def __init__(self, *args, **kwargs):
276 raise AttributeError(
"No constructor defined")
277 __repr__ = _swig_repr
279 def write(self, osa_buf):
280 """write(_ostream self, char const * osa_buf)"""
281 return _IMP_pmi1._ostream_write(self, osa_buf)
283 _ostream_swigregister = _IMP_pmi1._ostream_swigregister
284 _ostream_swigregister(_ostream)
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_pmi1.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_pmi1.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_pmi1.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_pmi1.IMP_C_OPEN_BINARY
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_pmi1.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_pmi1.IMPCGAL_SHOW_WARNINGS
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pmi1.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_pmi1.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_pmi1.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_pmi1.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_pmi1.IMPALGEBRA_SHOW_WARNINGS
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pmi1.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_pmi1.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_pmi1.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_pmi1.IMPDISPLAY_SHOW_WARNINGS
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_pmi1.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pmi1.IMPSCOREFUNCTOR_SHOW_WARNINGS
327 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pmi1.IMP_STATISTICS_HAS_IMP_CGAL
328 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
329 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
330 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_STATISTICS_HAS_BOOST_RANDOM
331 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_STATISTICS_HAS_BOOST_SYSTEM
332 IMP_STATISTICS_HAS_CGAL = _IMP_pmi1.IMP_STATISTICS_HAS_CGAL
333 IMP_STATISTICS_HAS_NUMPY = _IMP_pmi1.IMP_STATISTICS_HAS_NUMPY
334 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pmi1.IMPSTATISTICS_SHOW_WARNINGS
336 IMP_CORE_HAS_IMP_CGAL = _IMP_pmi1.IMP_CORE_HAS_IMP_CGAL
337 IMP_CORE_HAS_IMP_KERNEL = _IMP_pmi1.IMP_CORE_HAS_IMP_KERNEL
338 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_CORE_HAS_BOOST_FILESYSTEM
339 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
340 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_CORE_HAS_BOOST_RANDOM
341 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_CORE_HAS_BOOST_SYSTEM
342 IMP_CORE_HAS_CGAL = _IMP_pmi1.IMP_CORE_HAS_CGAL
343 IMP_CORE_HAS_HDF5 = _IMP_pmi1.IMP_CORE_HAS_HDF5
344 IMP_CORE_HAS_NUMPY = _IMP_pmi1.IMP_CORE_HAS_NUMPY
345 IMPCORE_SHOW_WARNINGS = _IMP_pmi1.IMPCORE_SHOW_WARNINGS
347 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pmi1.IMP_CONTAINER_HAS_IMP_ALGEBRA
348 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pmi1.IMP_CONTAINER_HAS_IMP_CGAL
349 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pmi1.IMP_CONTAINER_HAS_IMP_DISPLAY
350 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pmi1.IMP_CONTAINER_HAS_IMP_KERNEL
351 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
352 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
353 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
354 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_CONTAINER_HAS_BOOST_RANDOM
355 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_CONTAINER_HAS_BOOST_SYSTEM
356 IMP_CONTAINER_HAS_CGAL = _IMP_pmi1.IMP_CONTAINER_HAS_CGAL
357 IMP_CONTAINER_HAS_HDF5 = _IMP_pmi1.IMP_CONTAINER_HAS_HDF5
358 IMP_CONTAINER_HAS_NUMPY = _IMP_pmi1.IMP_CONTAINER_HAS_NUMPY
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_pmi1.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_pmi1.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_pmi1.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_pmi1.IMPCONTAINER_SHOW_WARNINGS
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_pmi1.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pmi1.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pmi1.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_pmi1.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_pmi1.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_NUMPY = _IMP_pmi1.IMP_ATOM_HAS_NUMPY
374 IMP_ATOM_HAS_PYTHON_IHM = _IMP_pmi1.IMP_ATOM_HAS_PYTHON_IHM
375 IMPATOM_SHOW_WARNINGS = _IMP_pmi1.IMPATOM_SHOW_WARNINGS
376 IMP_ATOM_TYPE_INDEX = _IMP_pmi1.IMP_ATOM_TYPE_INDEX
377 IMP_RESIDUE_TYPE_INDEX = _IMP_pmi1.IMP_RESIDUE_TYPE_INDEX
378 IMP_HIERARCHY_TYPE_INDEX = _IMP_pmi1.IMP_HIERARCHY_TYPE_INDEX
379 IMP_CHAIN_TYPE_INDEX = _IMP_pmi1.IMP_CHAIN_TYPE_INDEX
381 IMP_EM_HAS_IMP_CGAL = _IMP_pmi1.IMP_EM_HAS_IMP_CGAL
382 IMP_EM_HAS_IMP_CONTAINER = _IMP_pmi1.IMP_EM_HAS_IMP_CONTAINER
383 IMP_EM_HAS_IMP_DISPLAY = _IMP_pmi1.IMP_EM_HAS_IMP_DISPLAY
384 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_EM_HAS_IMP_SCORE_FUNCTOR
385 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_EM_HAS_BOOST_FILESYSTEM
386 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
387 IMP_EM_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_EM_HAS_BOOST_RANDOM
388 IMP_EM_HAS_BOOST_REGEX = _IMP_pmi1.IMP_EM_HAS_BOOST_REGEX
389 IMP_EM_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_EM_HAS_BOOST_SYSTEM
390 IMP_EM_HAS_CGAL = _IMP_pmi1.IMP_EM_HAS_CGAL
391 IMP_EM_HAS_HDF5 = _IMP_pmi1.IMP_EM_HAS_HDF5
392 IMP_EM_HAS_NUMPY = _IMP_pmi1.IMP_EM_HAS_NUMPY
393 IMP_EM_HAS_PYTHON_IHM = _IMP_pmi1.IMP_EM_HAS_PYTHON_IHM
394 IMPEM_SHOW_WARNINGS = _IMP_pmi1.IMPEM_SHOW_WARNINGS
396 IMP_SAXS_HAS_IMP_CGAL = _IMP_pmi1.IMP_SAXS_HAS_IMP_CGAL
397 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_pmi1.IMP_SAXS_HAS_IMP_CONTAINER
398 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_pmi1.IMP_SAXS_HAS_IMP_DISPLAY
399 IMP_SAXS_HAS_IMP_KERNEL = _IMP_pmi1.IMP_SAXS_HAS_IMP_KERNEL
400 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
401 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_SAXS_HAS_BOOST_FILESYSTEM
402 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
403 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_SAXS_HAS_BOOST_RANDOM
404 IMP_SAXS_HAS_BOOST_REGEX = _IMP_pmi1.IMP_SAXS_HAS_BOOST_REGEX
405 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_SAXS_HAS_BOOST_SYSTEM
406 IMP_SAXS_HAS_CGAL = _IMP_pmi1.IMP_SAXS_HAS_CGAL
407 IMP_SAXS_HAS_HDF5 = _IMP_pmi1.IMP_SAXS_HAS_HDF5
408 IMP_SAXS_HAS_NUMPY = _IMP_pmi1.IMP_SAXS_HAS_NUMPY
409 IMP_SAXS_HAS_PYTHON_IHM = _IMP_pmi1.IMP_SAXS_HAS_PYTHON_IHM
410 IMPSAXS_SHOW_WARNINGS = _IMP_pmi1.IMPSAXS_SHOW_WARNINGS
412 IMP_ISD_HAS_IMP_CGAL = _IMP_pmi1.IMP_ISD_HAS_IMP_CGAL
413 IMP_ISD_HAS_IMP_DISPLAY = _IMP_pmi1.IMP_ISD_HAS_IMP_DISPLAY
414 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
415 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_ISD_HAS_BOOST_FILESYSTEM
416 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
417 IMP_ISD_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_ISD_HAS_BOOST_RANDOM
418 IMP_ISD_HAS_BOOST_REGEX = _IMP_pmi1.IMP_ISD_HAS_BOOST_REGEX
419 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_ISD_HAS_BOOST_SYSTEM
420 IMP_ISD_HAS_CGAL = _IMP_pmi1.IMP_ISD_HAS_CGAL
421 IMP_ISD_HAS_HDF5 = _IMP_pmi1.IMP_ISD_HAS_HDF5
422 IMP_ISD_HAS_NUMPY = _IMP_pmi1.IMP_ISD_HAS_NUMPY
423 IMP_ISD_HAS_PYTHON_IHM = _IMP_pmi1.IMP_ISD_HAS_PYTHON_IHM
424 IMPISD_SHOW_WARNINGS = _IMP_pmi1.IMPISD_SHOW_WARNINGS
426 IMP_PMI1_HAS_IMP_ALGEBRA = _IMP_pmi1.IMP_PMI1_HAS_IMP_ALGEBRA
427 IMP_PMI1_HAS_IMP_ATOM = _IMP_pmi1.IMP_PMI1_HAS_IMP_ATOM
428 IMP_PMI1_HAS_IMP_CGAL = _IMP_pmi1.IMP_PMI1_HAS_IMP_CGAL
429 IMP_PMI1_HAS_IMP_DISPLAY = _IMP_pmi1.IMP_PMI1_HAS_IMP_DISPLAY
430 IMP_PMI1_HAS_IMP_EM = _IMP_pmi1.IMP_PMI1_HAS_IMP_EM
431 IMP_PMI1_HAS_IMP_KERNEL = _IMP_pmi1.IMP_PMI1_HAS_IMP_KERNEL
432 IMP_PMI1_HAS_IMP_SAXS = _IMP_pmi1.IMP_PMI1_HAS_IMP_SAXS
433 IMP_PMI1_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi1.IMP_PMI1_HAS_IMP_SCORE_FUNCTOR
434 IMP_PMI1_HAS_IMP_STATISTICS = _IMP_pmi1.IMP_PMI1_HAS_IMP_STATISTICS
435 IMP_PMI1_HAS_BOOST_FILESYSTEM = _IMP_pmi1.IMP_PMI1_HAS_BOOST_FILESYSTEM
436 IMP_PMI1_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi1.IMP_PMI1_HAS_BOOST_PROGRAMOPTIONS
437 IMP_PMI1_HAS_BOOST_RANDOM = _IMP_pmi1.IMP_PMI1_HAS_BOOST_RANDOM
438 IMP_PMI1_HAS_BOOST_REGEX = _IMP_pmi1.IMP_PMI1_HAS_BOOST_REGEX
439 IMP_PMI1_HAS_BOOST_SYSTEM = _IMP_pmi1.IMP_PMI1_HAS_BOOST_SYSTEM
440 IMP_PMI1_HAS_CGAL = _IMP_pmi1.IMP_PMI1_HAS_CGAL
441 IMP_PMI1_HAS_HDF5 = _IMP_pmi1.IMP_PMI1_HAS_HDF5
442 IMP_PMI1_HAS_NUMPY = _IMP_pmi1.IMP_PMI1_HAS_NUMPY
443 IMP_PMI1_HAS_PYTHON_IHM = _IMP_pmi1.IMP_PMI1_HAS_PYTHON_IHM
444 IMPPMI1_SHOW_WARNINGS = _IMP_pmi1.IMPPMI1_SHOW_WARNINGS
448 "This module is provided to support legacy published applications "
449 "of IMP - it is no longer developed and should not be used for "
450 "new systems. Use the IMP.pmi module instead.")
454 _object_types.append(
"CompositeRestraint")
457 def _object_cast_to_CompositeRestraint(o):
458 """_object_cast_to_CompositeRestraint(Object o) -> CompositeRestraint"""
459 return _IMP_pmi1._object_cast_to_CompositeRestraint(o)
461 def Uncertainties(l=[]):
462 return [Uncertainty(x)
for x
in l]
463 _plural_types.append(
"Uncertainties")
466 _value_types.append(
"Uncertainty")
469 def Resolutions(l=[]):
470 return [Resolution(x)
for x
in l]
471 _plural_types.append(
"Resolutions")
474 _value_types.append(
"Resolution")
477 def Symmetrics(l=[]):
478 return [Symmetric(x)
for x
in l]
479 _plural_types.append(
"Symmetrics")
482 _value_types.append(
"Symmetric")
485 _object_types.append(
"SigmoidRestraintSphere")
488 def _object_cast_to_SigmoidRestraintSphere(o):
489 """_object_cast_to_SigmoidRestraintSphere(Object o) -> SigmoidRestraintSphere"""
490 return _IMP_pmi1._object_cast_to_SigmoidRestraintSphere(o)
492 _object_types.append(
"TransformMover")
495 def _object_cast_to_TransformMover(o):
496 """_object_cast_to_TransformMover(Object o) -> TransformMover"""
497 return _IMP_pmi1._object_cast_to_TransformMover(o)
499 _object_types.append(
"MembraneRestraint")
502 def _object_cast_to_MembraneRestraint(o):
503 """_object_cast_to_MembraneRestraint(Object o) -> MembraneRestraint"""
504 return _IMP_pmi1._object_cast_to_MembraneRestraint(o)
506 _object_types.append(
"InternalCoordinatesConstraint")
509 def _object_cast_to_InternalCoordinatesConstraint(o):
510 """_object_cast_to_InternalCoordinatesConstraint(Object o) -> InternalCoordinatesConstraint"""
511 return _IMP_pmi1._object_cast_to_InternalCoordinatesConstraint(o)
513 """Proxy of C++ IMP::pmi1::MembraneRestraint class."""
515 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
517 def __init__(self, m, z_nuisance, thickness, softness, plateau, linear):
518 """__init__(IMP::pmi1::MembraneRestraint self, Model m, ParticleIndex z_nuisance, double thickness, double softness, double plateau, double linear) -> MembraneRestraint"""
519 this = _IMP_pmi1.new_MembraneRestraint(m, z_nuisance, thickness, softness, plateau, linear)
521 self.this.append(this)
522 except __builtin__.Exception:
525 def add_particles_below(self, particles):
526 """add_particles_below(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
527 return _IMP_pmi1.MembraneRestraint_add_particles_below(self, particles)
530 def add_particles_above(self, particles):
531 """add_particles_above(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
532 return _IMP_pmi1.MembraneRestraint_add_particles_above(self, particles)
535 def add_particles_inside(self, particles):
536 """add_particles_inside(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
537 return _IMP_pmi1.MembraneRestraint_add_particles_inside(self, particles)
540 def get_score(self, prob):
541 """get_score(MembraneRestraint self, double prob) -> double"""
542 return _IMP_pmi1.MembraneRestraint_get_score(self, prob)
545 def get_probability_above(self, z, z_slope_center_upper):
546 """get_probability_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
547 return _IMP_pmi1.MembraneRestraint_get_probability_above(self, z, z_slope_center_upper)
550 def get_score_above(self, z, z_slope_center_upper):
551 """get_score_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
552 return _IMP_pmi1.MembraneRestraint_get_score_above(self, z, z_slope_center_upper)
555 def get_probability_below(self, z, z_slope_center_lower):
556 """get_probability_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
557 return _IMP_pmi1.MembraneRestraint_get_probability_below(self, z, z_slope_center_lower)
560 def get_score_below(self, z, z_slope_center_lower):
561 """get_score_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
562 return _IMP_pmi1.MembraneRestraint_get_score_below(self, z, z_slope_center_lower)
565 def get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper):
566 """get_score_inside(MembraneRestraint self, double z, double z_slope_center_lower, double z_slope_center_upper) -> double"""
567 return _IMP_pmi1.MembraneRestraint_get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper)
571 """__str__(MembraneRestraint self) -> std::string"""
572 return _IMP_pmi1.MembraneRestraint___str__(self)
576 """__repr__(MembraneRestraint self) -> std::string"""
577 return _IMP_pmi1.MembraneRestraint___repr__(self)
582 return _object_cast_to_MembraneRestraint(o)
584 MembraneRestraint_swigregister = _IMP_pmi1.MembraneRestraint_swigregister
585 MembraneRestraint_swigregister(MembraneRestraint)
588 """Proxy of C++ IMP::pmi1::CompositeRestraint class."""
590 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
592 def __init__(self, *args):
594 __init__(IMP::pmi1::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau, std::string name) -> CompositeRestraint
595 __init__(IMP::pmi1::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau) -> CompositeRestraint
597 this = _IMP_pmi1.new_CompositeRestraint(*args)
599 self.this.append(this)
600 except __builtin__.Exception:
603 def add_composite_particle(self, pi):
604 """add_composite_particle(CompositeRestraint self, _ParticleIndexesAdaptor pi)"""
605 return _IMP_pmi1.CompositeRestraint_add_composite_particle(self, pi)
608 def get_number_of_elements(self):
609 """get_number_of_elements(CompositeRestraint self) -> unsigned int"""
610 return _IMP_pmi1.CompositeRestraint_get_number_of_elements(self)
613 def do_get_inputs(self):
614 """do_get_inputs(CompositeRestraint self) -> IMP::ModelObjectsTemp"""
615 return _IMP_pmi1.CompositeRestraint_do_get_inputs(self)
618 def get_version_info(self):
619 """get_version_info(CompositeRestraint self) -> VersionInfo"""
620 return _IMP_pmi1.CompositeRestraint_get_version_info(self)
623 def get_probability(self):
624 """get_probability(CompositeRestraint self) -> double"""
625 return _IMP_pmi1.CompositeRestraint_get_probability(self)
629 """__str__(CompositeRestraint self) -> std::string"""
630 return _IMP_pmi1.CompositeRestraint___str__(self)
634 """__repr__(CompositeRestraint self) -> std::string"""
635 return _IMP_pmi1.CompositeRestraint___repr__(self)
640 return _object_cast_to_CompositeRestraint(o)
642 CompositeRestraint_swigregister = _IMP_pmi1.CompositeRestraint_swigregister
643 CompositeRestraint_swigregister(CompositeRestraint)
646 """Proxy of C++ IMP::pmi1::Uncertainty class."""
648 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
650 def get_uncertainty(self):
651 """get_uncertainty(Uncertainty self) -> IMP::Float"""
652 return _IMP_pmi1.Uncertainty_get_uncertainty(self)
655 def set_uncertainty(self, d):
656 """set_uncertainty(Uncertainty self, IMP::Float d)"""
657 return _IMP_pmi1.Uncertainty_set_uncertainty(self, d)
660 def __init__(self, *args):
662 __init__(IMP::pmi1::Uncertainty self) -> Uncertainty
663 __init__(IMP::pmi1::Uncertainty self, Model m, ParticleIndex id) -> Uncertainty
664 __init__(IMP::pmi1::Uncertainty self, _ParticleAdaptor d) -> Uncertainty
666 this = _IMP_pmi1.new_Uncertainty(*args)
668 self.this.append(this)
669 except __builtin__.Exception:
672 def get_is_setup(*args):
674 get_is_setup(Model m, ParticleIndex pi) -> bool
675 get_is_setup(_ParticleAdaptor p) -> bool
677 return _IMP_pmi1.Uncertainty_get_is_setup(*args)
679 get_is_setup = staticmethod(get_is_setup)
681 def show(self, *args):
683 show(Uncertainty self, _ostream out)
684 show(Uncertainty self)
686 return _IMP_pmi1.Uncertainty_show(self, *args)
691 setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
692 setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
694 return _IMP_pmi1.Uncertainty_setup_particle(*args)
696 setup_particle = staticmethod(setup_particle)
698 def get_uncertainty_key():
699 """get_uncertainty_key() -> FloatKey"""
700 return _IMP_pmi1.Uncertainty_get_uncertainty_key()
702 get_uncertainty_key = staticmethod(get_uncertainty_key)
704 def add_attribute(self, *args):
706 add_attribute(Uncertainty self, FloatKey k, IMP::Float v, bool opt)
707 add_attribute(Uncertainty self, FloatKey a0, IMP::Float a1)
708 add_attribute(Uncertainty self, IntKey a0, IMP::Int a1)
709 add_attribute(Uncertainty self, StringKey a0, IMP::String a1)
710 add_attribute(Uncertainty self, ParticleIndexKey a0, Particle a1)
711 add_attribute(Uncertainty self, ObjectKey a0, Object a1)
713 return _IMP_pmi1.Uncertainty_add_attribute(self, *args)
716 def get_value(self, *args):
718 get_value(Uncertainty self, FloatKey a0) -> IMP::Float
719 get_value(Uncertainty self, IntKey a0) -> IMP::Int
720 get_value(Uncertainty self, StringKey a0) -> IMP::String
721 get_value(Uncertainty self, ParticleIndexKey a0) -> Particle
722 get_value(Uncertainty self, ObjectKey a0) -> Object
724 return _IMP_pmi1.Uncertainty_get_value(self, *args)
727 def set_value(self, *args):
729 set_value(Uncertainty self, FloatKey a0, IMP::Float a1)
730 set_value(Uncertainty self, IntKey a0, IMP::Int a1)
731 set_value(Uncertainty self, StringKey a0, IMP::String a1)
732 set_value(Uncertainty self, ParticleIndexKey a0, Particle a1)
733 set_value(Uncertainty self, ObjectKey a0, Object a1)
735 return _IMP_pmi1.Uncertainty_set_value(self, *args)
738 def remove_attribute(self, *args):
740 remove_attribute(Uncertainty self, FloatKey a0)
741 remove_attribute(Uncertainty self, IntKey a0)
742 remove_attribute(Uncertainty self, StringKey a0)
743 remove_attribute(Uncertainty self, ParticleIndexKey a0)
744 remove_attribute(Uncertainty self, ObjectKey a0)
746 return _IMP_pmi1.Uncertainty_remove_attribute(self, *args)
749 def has_attribute(self, *args):
751 has_attribute(Uncertainty self, FloatKey a0) -> bool
752 has_attribute(Uncertainty self, IntKey a0) -> bool
753 has_attribute(Uncertainty self, StringKey a0) -> bool
754 has_attribute(Uncertainty self, ParticleIndexKey a0) -> bool
755 has_attribute(Uncertainty self, ObjectKey a0) -> bool
757 return _IMP_pmi1.Uncertainty_has_attribute(self, *args)
760 def get_derivative(self, a0):
761 """get_derivative(Uncertainty self, FloatKey a0) -> double"""
762 return _IMP_pmi1.Uncertainty_get_derivative(self, a0)
766 """get_name(Uncertainty self) -> std::string"""
767 return _IMP_pmi1.Uncertainty_get_name(self)
770 def clear_caches(self):
771 """clear_caches(Uncertainty self)"""
772 return _IMP_pmi1.Uncertainty_clear_caches(self)
775 def set_name(self, a0):
776 """set_name(Uncertainty self, std::string a0)"""
777 return _IMP_pmi1.Uncertainty_set_name(self, a0)
781 """set_check_level(Uncertainty self, IMP::CheckLevel a0)"""
782 return _IMP_pmi1.Uncertainty_set_check_level(self, a0)
785 def add_to_derivative(self, a0, a1, a2):
786 """add_to_derivative(Uncertainty self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
787 return _IMP_pmi1.Uncertainty_add_to_derivative(self, a0, a1, a2)
790 def set_is_optimized(self, a0, a1):
791 """set_is_optimized(Uncertainty self, FloatKey a0, bool a1)"""
792 return _IMP_pmi1.Uncertainty_set_is_optimized(self, a0, a1)
795 def get_is_optimized(self, a0):
796 """get_is_optimized(Uncertainty self, FloatKey a0) -> bool"""
797 return _IMP_pmi1.Uncertainty_get_is_optimized(self, a0)
801 """get_check_level(Uncertainty self) -> IMP::CheckLevel"""
802 return _IMP_pmi1.Uncertainty_get_check_level(self)
805 def __eq__(self, *args):
807 __eq__(Uncertainty self, Uncertainty o) -> bool
808 __eq__(Uncertainty self, Particle d) -> bool
810 return _IMP_pmi1.Uncertainty___eq__(self, *args)
813 def __ne__(self, *args):
815 __ne__(Uncertainty self, Uncertainty o) -> bool
816 __ne__(Uncertainty self, Particle d) -> bool
818 return _IMP_pmi1.Uncertainty___ne__(self, *args)
821 def __le__(self, *args):
823 __le__(Uncertainty self, Uncertainty o) -> bool
824 __le__(Uncertainty self, Particle d) -> bool
826 return _IMP_pmi1.Uncertainty___le__(self, *args)
829 def __lt__(self, *args):
831 __lt__(Uncertainty self, Uncertainty o) -> bool
832 __lt__(Uncertainty self, Particle d) -> bool
834 return _IMP_pmi1.Uncertainty___lt__(self, *args)
837 def __ge__(self, *args):
839 __ge__(Uncertainty self, Uncertainty o) -> bool
840 __ge__(Uncertainty self, Particle d) -> bool
842 return _IMP_pmi1.Uncertainty___ge__(self, *args)
845 def __gt__(self, *args):
847 __gt__(Uncertainty self, Uncertainty o) -> bool
848 __gt__(Uncertainty self, Particle d) -> bool
850 return _IMP_pmi1.Uncertainty___gt__(self, *args)
854 """__hash__(Uncertainty self) -> std::size_t"""
855 return _IMP_pmi1.Uncertainty___hash__(self)
859 """__str__(Uncertainty self) -> std::string"""
860 return _IMP_pmi1.Uncertainty___str__(self)
864 """__repr__(Uncertainty self) -> std::string"""
865 return _IMP_pmi1.Uncertainty___repr__(self)
867 __swig_destroy__ = _IMP_pmi1.delete_Uncertainty
868 __del__ =
lambda self:
None
869 Uncertainty_swigregister = _IMP_pmi1.Uncertainty_swigregister
870 Uncertainty_swigregister(Uncertainty)
872 def Uncertainty_get_is_setup(*args):
874 get_is_setup(Model m, ParticleIndex pi) -> bool
875 Uncertainty_get_is_setup(_ParticleAdaptor p) -> bool
877 return _IMP_pmi1.Uncertainty_get_is_setup(*args)
879 def Uncertainty_setup_particle(*args):
881 setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
882 Uncertainty_setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
884 return _IMP_pmi1.Uncertainty_setup_particle(*args)
886 def Uncertainty_get_uncertainty_key():
887 """Uncertainty_get_uncertainty_key() -> FloatKey"""
888 return _IMP_pmi1.Uncertainty_get_uncertainty_key()
891 """Proxy of C++ IMP::pmi1::Resolution class."""
893 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
896 """get_resolution(Resolution self) -> IMP::Float"""
897 return _IMP_pmi1.Resolution_get_resolution(self)
900 def set_resolution(self, d):
901 """set_resolution(Resolution self, IMP::Float d)"""
902 return _IMP_pmi1.Resolution_set_resolution(self, d)
905 def __init__(self, *args):
907 __init__(IMP::pmi1::Resolution self) -> Resolution
908 __init__(IMP::pmi1::Resolution self, Model m, ParticleIndex id) -> Resolution
909 __init__(IMP::pmi1::Resolution self, _ParticleAdaptor d) -> Resolution
911 this = _IMP_pmi1.new_Resolution(*args)
913 self.this.append(this)
914 except __builtin__.Exception:
917 def get_is_setup(*args):
919 get_is_setup(Model m, ParticleIndex pi) -> bool
920 get_is_setup(_ParticleAdaptor p) -> bool
922 return _IMP_pmi1.Resolution_get_is_setup(*args)
924 get_is_setup = staticmethod(get_is_setup)
926 def show(self, *args):
928 show(Resolution self, _ostream out)
929 show(Resolution self)
931 return _IMP_pmi1.Resolution_show(self, *args)
936 setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
937 setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
939 return _IMP_pmi1.Resolution_setup_particle(*args)
941 setup_particle = staticmethod(setup_particle)
943 def get_resolution_key():
944 """get_resolution_key() -> FloatKey"""
945 return _IMP_pmi1.Resolution_get_resolution_key()
947 get_resolution_key = staticmethod(get_resolution_key)
949 def add_attribute(self, *args):
951 add_attribute(Resolution self, FloatKey k, IMP::Float v, bool opt)
952 add_attribute(Resolution self, FloatKey a0, IMP::Float a1)
953 add_attribute(Resolution self, IntKey a0, IMP::Int a1)
954 add_attribute(Resolution self, StringKey a0, IMP::String a1)
955 add_attribute(Resolution self, ParticleIndexKey a0, Particle a1)
956 add_attribute(Resolution self, ObjectKey a0, Object a1)
958 return _IMP_pmi1.Resolution_add_attribute(self, *args)
961 def get_value(self, *args):
963 get_value(Resolution self, FloatKey a0) -> IMP::Float
964 get_value(Resolution self, IntKey a0) -> IMP::Int
965 get_value(Resolution self, StringKey a0) -> IMP::String
966 get_value(Resolution self, ParticleIndexKey a0) -> Particle
967 get_value(Resolution self, ObjectKey a0) -> Object
969 return _IMP_pmi1.Resolution_get_value(self, *args)
972 def set_value(self, *args):
974 set_value(Resolution self, FloatKey a0, IMP::Float a1)
975 set_value(Resolution self, IntKey a0, IMP::Int a1)
976 set_value(Resolution self, StringKey a0, IMP::String a1)
977 set_value(Resolution self, ParticleIndexKey a0, Particle a1)
978 set_value(Resolution self, ObjectKey a0, Object a1)
980 return _IMP_pmi1.Resolution_set_value(self, *args)
983 def remove_attribute(self, *args):
985 remove_attribute(Resolution self, FloatKey a0)
986 remove_attribute(Resolution self, IntKey a0)
987 remove_attribute(Resolution self, StringKey a0)
988 remove_attribute(Resolution self, ParticleIndexKey a0)
989 remove_attribute(Resolution self, ObjectKey a0)
991 return _IMP_pmi1.Resolution_remove_attribute(self, *args)
994 def has_attribute(self, *args):
996 has_attribute(Resolution self, FloatKey a0) -> bool
997 has_attribute(Resolution self, IntKey a0) -> bool
998 has_attribute(Resolution self, StringKey a0) -> bool
999 has_attribute(Resolution self, ParticleIndexKey a0) -> bool
1000 has_attribute(Resolution self, ObjectKey a0) -> bool
1002 return _IMP_pmi1.Resolution_has_attribute(self, *args)
1005 def get_derivative(self, a0):
1006 """get_derivative(Resolution self, FloatKey a0) -> double"""
1007 return _IMP_pmi1.Resolution_get_derivative(self, a0)
1011 """get_name(Resolution self) -> std::string"""
1012 return _IMP_pmi1.Resolution_get_name(self)
1015 def clear_caches(self):
1016 """clear_caches(Resolution self)"""
1017 return _IMP_pmi1.Resolution_clear_caches(self)
1020 def set_name(self, a0):
1021 """set_name(Resolution self, std::string a0)"""
1022 return _IMP_pmi1.Resolution_set_name(self, a0)
1026 """set_check_level(Resolution self, IMP::CheckLevel a0)"""
1027 return _IMP_pmi1.Resolution_set_check_level(self, a0)
1030 def add_to_derivative(self, a0, a1, a2):
1031 """add_to_derivative(Resolution self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1032 return _IMP_pmi1.Resolution_add_to_derivative(self, a0, a1, a2)
1035 def set_is_optimized(self, a0, a1):
1036 """set_is_optimized(Resolution self, FloatKey a0, bool a1)"""
1037 return _IMP_pmi1.Resolution_set_is_optimized(self, a0, a1)
1040 def get_is_optimized(self, a0):
1041 """get_is_optimized(Resolution self, FloatKey a0) -> bool"""
1042 return _IMP_pmi1.Resolution_get_is_optimized(self, a0)
1046 """get_check_level(Resolution self) -> IMP::CheckLevel"""
1047 return _IMP_pmi1.Resolution_get_check_level(self)
1050 def __eq__(self, *args):
1052 __eq__(Resolution self, Resolution o) -> bool
1053 __eq__(Resolution self, Particle d) -> bool
1055 return _IMP_pmi1.Resolution___eq__(self, *args)
1058 def __ne__(self, *args):
1060 __ne__(Resolution self, Resolution o) -> bool
1061 __ne__(Resolution self, Particle d) -> bool
1063 return _IMP_pmi1.Resolution___ne__(self, *args)
1066 def __le__(self, *args):
1068 __le__(Resolution self, Resolution o) -> bool
1069 __le__(Resolution self, Particle d) -> bool
1071 return _IMP_pmi1.Resolution___le__(self, *args)
1074 def __lt__(self, *args):
1076 __lt__(Resolution self, Resolution o) -> bool
1077 __lt__(Resolution self, Particle d) -> bool
1079 return _IMP_pmi1.Resolution___lt__(self, *args)
1082 def __ge__(self, *args):
1084 __ge__(Resolution self, Resolution o) -> bool
1085 __ge__(Resolution self, Particle d) -> bool
1087 return _IMP_pmi1.Resolution___ge__(self, *args)
1090 def __gt__(self, *args):
1092 __gt__(Resolution self, Resolution o) -> bool
1093 __gt__(Resolution self, Particle d) -> bool
1095 return _IMP_pmi1.Resolution___gt__(self, *args)
1099 """__hash__(Resolution self) -> std::size_t"""
1100 return _IMP_pmi1.Resolution___hash__(self)
1104 """__str__(Resolution self) -> std::string"""
1105 return _IMP_pmi1.Resolution___str__(self)
1109 """__repr__(Resolution self) -> std::string"""
1110 return _IMP_pmi1.Resolution___repr__(self)
1112 __swig_destroy__ = _IMP_pmi1.delete_Resolution
1113 __del__ =
lambda self:
None
1114 Resolution_swigregister = _IMP_pmi1.Resolution_swigregister
1115 Resolution_swigregister(Resolution)
1117 def Resolution_get_is_setup(*args):
1119 get_is_setup(Model m, ParticleIndex pi) -> bool
1120 Resolution_get_is_setup(_ParticleAdaptor p) -> bool
1122 return _IMP_pmi1.Resolution_get_is_setup(*args)
1124 def Resolution_setup_particle(*args):
1126 setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
1127 Resolution_setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
1129 return _IMP_pmi1.Resolution_setup_particle(*args)
1131 def Resolution_get_resolution_key():
1132 """Resolution_get_resolution_key() -> FloatKey"""
1133 return _IMP_pmi1.Resolution_get_resolution_key()
1136 """Proxy of C++ IMP::pmi1::Symmetric class."""
1138 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1140 def get_symmetric(self):
1141 """get_symmetric(Symmetric self) -> IMP::Float"""
1142 return _IMP_pmi1.Symmetric_get_symmetric(self)
1145 def set_symmetric(self, d):
1146 """set_symmetric(Symmetric self, IMP::Float d)"""
1147 return _IMP_pmi1.Symmetric_set_symmetric(self, d)
1150 def __init__(self, *args):
1152 __init__(IMP::pmi1::Symmetric self) -> Symmetric
1153 __init__(IMP::pmi1::Symmetric self, Model m, ParticleIndex id) -> Symmetric
1154 __init__(IMP::pmi1::Symmetric self, _ParticleAdaptor d) -> Symmetric
1156 this = _IMP_pmi1.new_Symmetric(*args)
1158 self.this.append(this)
1159 except __builtin__.Exception:
1162 def get_is_setup(*args):
1164 get_is_setup(Model m, ParticleIndex pi) -> bool
1165 get_is_setup(_ParticleAdaptor p) -> bool
1167 return _IMP_pmi1.Symmetric_get_is_setup(*args)
1169 get_is_setup = staticmethod(get_is_setup)
1171 def show(self, *args):
1173 show(Symmetric self, _ostream out)
1174 show(Symmetric self)
1176 return _IMP_pmi1.Symmetric_show(self, *args)
1181 setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1182 setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1184 return _IMP_pmi1.Symmetric_setup_particle(*args)
1186 setup_particle = staticmethod(setup_particle)
1188 def get_symmetric_key():
1189 """get_symmetric_key() -> FloatKey"""
1190 return _IMP_pmi1.Symmetric_get_symmetric_key()
1192 get_symmetric_key = staticmethod(get_symmetric_key)
1194 def add_attribute(self, *args):
1196 add_attribute(Symmetric self, FloatKey k, IMP::Float v, bool opt)
1197 add_attribute(Symmetric self, FloatKey a0, IMP::Float a1)
1198 add_attribute(Symmetric self, IntKey a0, IMP::Int a1)
1199 add_attribute(Symmetric self, StringKey a0, IMP::String a1)
1200 add_attribute(Symmetric self, ParticleIndexKey a0, Particle a1)
1201 add_attribute(Symmetric self, ObjectKey a0, Object a1)
1203 return _IMP_pmi1.Symmetric_add_attribute(self, *args)
1206 def get_value(self, *args):
1208 get_value(Symmetric self, FloatKey a0) -> IMP::Float
1209 get_value(Symmetric self, IntKey a0) -> IMP::Int
1210 get_value(Symmetric self, StringKey a0) -> IMP::String
1211 get_value(Symmetric self, ParticleIndexKey a0) -> Particle
1212 get_value(Symmetric self, ObjectKey a0) -> Object
1214 return _IMP_pmi1.Symmetric_get_value(self, *args)
1217 def set_value(self, *args):
1219 set_value(Symmetric self, FloatKey a0, IMP::Float a1)
1220 set_value(Symmetric self, IntKey a0, IMP::Int a1)
1221 set_value(Symmetric self, StringKey a0, IMP::String a1)
1222 set_value(Symmetric self, ParticleIndexKey a0, Particle a1)
1223 set_value(Symmetric self, ObjectKey a0, Object a1)
1225 return _IMP_pmi1.Symmetric_set_value(self, *args)
1228 def remove_attribute(self, *args):
1230 remove_attribute(Symmetric self, FloatKey a0)
1231 remove_attribute(Symmetric self, IntKey a0)
1232 remove_attribute(Symmetric self, StringKey a0)
1233 remove_attribute(Symmetric self, ParticleIndexKey a0)
1234 remove_attribute(Symmetric self, ObjectKey a0)
1236 return _IMP_pmi1.Symmetric_remove_attribute(self, *args)
1239 def has_attribute(self, *args):
1241 has_attribute(Symmetric self, FloatKey a0) -> bool
1242 has_attribute(Symmetric self, IntKey a0) -> bool
1243 has_attribute(Symmetric self, StringKey a0) -> bool
1244 has_attribute(Symmetric self, ParticleIndexKey a0) -> bool
1245 has_attribute(Symmetric self, ObjectKey a0) -> bool
1247 return _IMP_pmi1.Symmetric_has_attribute(self, *args)
1250 def get_derivative(self, a0):
1251 """get_derivative(Symmetric self, FloatKey a0) -> double"""
1252 return _IMP_pmi1.Symmetric_get_derivative(self, a0)
1256 """get_name(Symmetric self) -> std::string"""
1257 return _IMP_pmi1.Symmetric_get_name(self)
1260 def clear_caches(self):
1261 """clear_caches(Symmetric self)"""
1262 return _IMP_pmi1.Symmetric_clear_caches(self)
1265 def set_name(self, a0):
1266 """set_name(Symmetric self, std::string a0)"""
1267 return _IMP_pmi1.Symmetric_set_name(self, a0)
1271 """set_check_level(Symmetric self, IMP::CheckLevel a0)"""
1272 return _IMP_pmi1.Symmetric_set_check_level(self, a0)
1275 def add_to_derivative(self, a0, a1, a2):
1276 """add_to_derivative(Symmetric self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1277 return _IMP_pmi1.Symmetric_add_to_derivative(self, a0, a1, a2)
1280 def set_is_optimized(self, a0, a1):
1281 """set_is_optimized(Symmetric self, FloatKey a0, bool a1)"""
1282 return _IMP_pmi1.Symmetric_set_is_optimized(self, a0, a1)
1285 def get_is_optimized(self, a0):
1286 """get_is_optimized(Symmetric self, FloatKey a0) -> bool"""
1287 return _IMP_pmi1.Symmetric_get_is_optimized(self, a0)
1291 """get_check_level(Symmetric self) -> IMP::CheckLevel"""
1292 return _IMP_pmi1.Symmetric_get_check_level(self)
1295 def __eq__(self, *args):
1297 __eq__(Symmetric self, Symmetric o) -> bool
1298 __eq__(Symmetric self, Particle d) -> bool
1300 return _IMP_pmi1.Symmetric___eq__(self, *args)
1303 def __ne__(self, *args):
1305 __ne__(Symmetric self, Symmetric o) -> bool
1306 __ne__(Symmetric self, Particle d) -> bool
1308 return _IMP_pmi1.Symmetric___ne__(self, *args)
1311 def __le__(self, *args):
1313 __le__(Symmetric self, Symmetric o) -> bool
1314 __le__(Symmetric self, Particle d) -> bool
1316 return _IMP_pmi1.Symmetric___le__(self, *args)
1319 def __lt__(self, *args):
1321 __lt__(Symmetric self, Symmetric o) -> bool
1322 __lt__(Symmetric self, Particle d) -> bool
1324 return _IMP_pmi1.Symmetric___lt__(self, *args)
1327 def __ge__(self, *args):
1329 __ge__(Symmetric self, Symmetric o) -> bool
1330 __ge__(Symmetric self, Particle d) -> bool
1332 return _IMP_pmi1.Symmetric___ge__(self, *args)
1335 def __gt__(self, *args):
1337 __gt__(Symmetric self, Symmetric o) -> bool
1338 __gt__(Symmetric self, Particle d) -> bool
1340 return _IMP_pmi1.Symmetric___gt__(self, *args)
1344 """__hash__(Symmetric self) -> std::size_t"""
1345 return _IMP_pmi1.Symmetric___hash__(self)
1349 """__str__(Symmetric self) -> std::string"""
1350 return _IMP_pmi1.Symmetric___str__(self)
1354 """__repr__(Symmetric self) -> std::string"""
1355 return _IMP_pmi1.Symmetric___repr__(self)
1357 __swig_destroy__ = _IMP_pmi1.delete_Symmetric
1358 __del__ =
lambda self:
None
1359 Symmetric_swigregister = _IMP_pmi1.Symmetric_swigregister
1360 Symmetric_swigregister(Symmetric)
1362 def Symmetric_get_is_setup(*args):
1364 get_is_setup(Model m, ParticleIndex pi) -> bool
1365 Symmetric_get_is_setup(_ParticleAdaptor p) -> bool
1367 return _IMP_pmi1.Symmetric_get_is_setup(*args)
1369 def Symmetric_setup_particle(*args):
1371 setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1372 Symmetric_setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1374 return _IMP_pmi1.Symmetric_setup_particle(*args)
1376 def Symmetric_get_symmetric_key():
1377 """Symmetric_get_symmetric_key() -> FloatKey"""
1378 return _IMP_pmi1.Symmetric_get_symmetric_key()
1381 """Proxy of C++ IMP::pmi1::SigmoidRestraintSphere class."""
1383 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1385 def __init__(self, *args):
1387 __init__(IMP::pmi1::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0, std::string name) -> SigmoidRestraintSphere
1388 __init__(IMP::pmi1::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0) -> SigmoidRestraintSphere
1389 __init__(IMP::pmi1::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude) -> SigmoidRestraintSphere
1391 this = _IMP_pmi1.new_SigmoidRestraintSphere(*args)
1393 self.this.append(this)
1394 except __builtin__.Exception:
1397 def set_amplitude(self, amplitude):
1398 """set_amplitude(SigmoidRestraintSphere self, double amplitude)"""
1399 return _IMP_pmi1.SigmoidRestraintSphere_set_amplitude(self, amplitude)
1402 def increment_amplitude(self, amplitude):
1403 """increment_amplitude(SigmoidRestraintSphere self, double amplitude)"""
1404 return _IMP_pmi1.SigmoidRestraintSphere_increment_amplitude(self, amplitude)
1407 def get_amplitude(self):
1408 """get_amplitude(SigmoidRestraintSphere self) -> double"""
1409 return _IMP_pmi1.SigmoidRestraintSphere_get_amplitude(self)
1412 def do_get_inputs(self):
1413 """do_get_inputs(SigmoidRestraintSphere self) -> IMP::ModelObjectsTemp"""
1414 return _IMP_pmi1.SigmoidRestraintSphere_do_get_inputs(self)
1417 def get_version_info(self):
1418 """get_version_info(SigmoidRestraintSphere self) -> VersionInfo"""
1419 return _IMP_pmi1.SigmoidRestraintSphere_get_version_info(self)
1423 """__str__(SigmoidRestraintSphere self) -> std::string"""
1424 return _IMP_pmi1.SigmoidRestraintSphere___str__(self)
1428 """__repr__(SigmoidRestraintSphere self) -> std::string"""
1429 return _IMP_pmi1.SigmoidRestraintSphere___repr__(self)
1434 return _object_cast_to_SigmoidRestraintSphere(o)
1436 SigmoidRestraintSphere_swigregister = _IMP_pmi1.SigmoidRestraintSphere_swigregister
1437 SigmoidRestraintSphere_swigregister(SigmoidRestraintSphere)
1440 """Proxy of C++ IMP::pmi1::TransformMover class."""
1442 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1444 def __init__(self, *args):
1446 __init__(IMP::pmi1::TransformMover self, Model m, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1447 __init__(IMP::pmi1::TransformMover self, Model m, Vector3D axis, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1448 __init__(IMP::pmi1::TransformMover self, Model m, _ParticleIndexAdaptor p1i, _ParticleIndexAdaptor p2i, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1450 this = _IMP_pmi1.new_TransformMover(*args)
1452 self.this.append(this)
1453 except __builtin__.Exception:
1456 def add_xyz_particle(self, pi):
1457 """add_xyz_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1458 return _IMP_pmi1.TransformMover_add_xyz_particle(self, pi)
1461 def add_rigid_body_particle(self, pi):
1462 """add_rigid_body_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1463 return _IMP_pmi1.TransformMover_add_rigid_body_particle(self, pi)
1466 def set_maximum_translation(self, mt):
1467 """set_maximum_translation(TransformMover self, IMP::Float mt)"""
1468 return _IMP_pmi1.TransformMover_set_maximum_translation(self, mt)
1471 def set_maximum_rotation(self, mr):
1472 """set_maximum_rotation(TransformMover self, IMP::Float mr)"""
1473 return _IMP_pmi1.TransformMover_set_maximum_rotation(self, mr)
1476 def get_maximum_translation(self):
1477 """get_maximum_translation(TransformMover self) -> IMP::Float"""
1478 return _IMP_pmi1.TransformMover_get_maximum_translation(self)
1481 def get_maximum_rotation(self):
1482 """get_maximum_rotation(TransformMover self) -> IMP::Float"""
1483 return _IMP_pmi1.TransformMover_get_maximum_rotation(self)
1486 def get_last_transformation(self):
1487 """get_last_transformation(TransformMover self) -> Transformation3D"""
1488 return _IMP_pmi1.TransformMover_get_last_transformation(self)
1491 def get_version_info(self):
1492 """get_version_info(TransformMover self) -> VersionInfo"""
1493 return _IMP_pmi1.TransformMover_get_version_info(self)
1497 """__str__(TransformMover self) -> std::string"""
1498 return _IMP_pmi1.TransformMover___str__(self)
1502 """__repr__(TransformMover self) -> std::string"""
1503 return _IMP_pmi1.TransformMover___repr__(self)
1508 return _object_cast_to_TransformMover(o)
1510 TransformMover_swigregister = _IMP_pmi1.TransformMover_swigregister
1511 TransformMover_swigregister(TransformMover)
1515 """create_elastic_network(IMP::Particles const & ps, IMP::Float dist_cutoff, IMP::Float strength) -> RestraintSet"""
1516 return _IMP_pmi1.create_elastic_network(ps, dist_cutoff, strength)
1518 def get_dihedral_angle(p1, p2, p3, p4):
1519 """get_dihedral_angle(Atom p1, Atom p2, Atom p3, Atom p4) -> IMP::Float"""
1520 return _IMP_pmi1.get_dihedral_angle(p1, p2, p3, p4)
1522 def get_bipartite_minimum_sphere_distance(m1, m2):
1523 """get_bipartite_minimum_sphere_distance(IMP::core::XYZRs const & m1, IMP::core::XYZRs const & m2) -> IMP::Float"""
1524 return _IMP_pmi1.get_bipartite_minimum_sphere_distance(m1, m2)
1526 def get_list_of_bipartite_minimum_sphere_distance(pss):
1527 """get_list_of_bipartite_minimum_sphere_distance(IMP::ParticlesTemps const & pss) -> IMP::Floats"""
1528 return _IMP_pmi1.get_list_of_bipartite_minimum_sphere_distance(pss)
1530 """Proxy of C++ IMP::pmi1::InternalCoordinatesConstraint class."""
1532 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1535 """__init__(IMP::pmi1::InternalCoordinatesConstraint self) -> InternalCoordinatesConstraint"""
1536 this = _IMP_pmi1.new_InternalCoordinatesConstraint()
1538 self.this.append(this)
1539 except __builtin__.Exception:
1542 def do_get_inputs(self, m, pis):
1543 """do_get_inputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1544 return _IMP_pmi1.InternalCoordinatesConstraint_do_get_inputs(self, m, pis)
1547 def do_get_outputs(self, m, pis):
1548 """do_get_outputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1549 return _IMP_pmi1.InternalCoordinatesConstraint_do_get_outputs(self, m, pis)
1552 def get_version_info(self):
1553 """get_version_info(InternalCoordinatesConstraint self) -> VersionInfo"""
1554 return _IMP_pmi1.InternalCoordinatesConstraint_get_version_info(self)
1558 """__str__(InternalCoordinatesConstraint self) -> std::string"""
1559 return _IMP_pmi1.InternalCoordinatesConstraint___str__(self)
1563 """__repr__(InternalCoordinatesConstraint self) -> std::string"""
1564 return _IMP_pmi1.InternalCoordinatesConstraint___repr__(self)
1569 return _object_cast_to_InternalCoordinatesConstraint(o)
1571 InternalCoordinatesConstraint_swigregister = _IMP_pmi1.InternalCoordinatesConstraint_swigregister
1572 InternalCoordinatesConstraint_swigregister(InternalCoordinatesConstraint)
1576 """get_module_version() -> std::string const"""
1577 return _IMP_pmi1.get_module_version()
1580 """get_example_path(std::string fname) -> std::string"""
1581 return _IMP_pmi1.get_example_path(fname)
1584 """get_data_path(std::string fname) -> std::string"""
1585 return _IMP_pmi1.get_data_path(fname)
1587 from .
import _version_check
A base class for modifiers of ParticlesTemp.
CheckLevel get_check_level()
Get the current audit mode.
A base class for ISD Restraints.
Various classes to hold sets of particles.
def deprecated_module
Mark a Python module as deprecated.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_module_version()
Return the version of this module, as a string.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
static Molecule setup_particle(Model *m, ParticleIndex pi)
RestraintSet * create_elastic_network(const Particles &ps, Float dist_cutoff, Float strength)
Create an elastic network restraint set.
A base class for classes which perturb particles.
Basic utilities for handling cryo-electron microscopy 3D density maps.
Interface to specialized Particle types (e.g. atoms)
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for small angle X-ray scattering (SAXS) data.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
A restraint is a term in an IMP ScoringFunction.