10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_mpi')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_mpi')
25 _IMP_mpi = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_mpi', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_mpi', fp, pathname, description)
43 _IMP_mpi = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_MPI_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_MPI_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_mpi.delete_IMP_MPI_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_MPI_SwigPyIterator self) -> PyObject *"""
126 return _IMP_mpi.IMP_MPI_SwigPyIterator_value(self)
131 incr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
132 incr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
134 return _IMP_mpi.IMP_MPI_SwigPyIterator_incr(self, n)
139 decr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
140 decr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
142 return _IMP_mpi.IMP_MPI_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_mpi.IMP_MPI_SwigPyIterator_distance(self, x)
151 """equal(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
152 return _IMP_mpi.IMP_MPI_SwigPyIterator_equal(self, x)
156 """copy(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator"""
157 return _IMP_mpi.IMP_MPI_SwigPyIterator_copy(self)
161 """next(IMP_MPI_SwigPyIterator self) -> PyObject *"""
162 return _IMP_mpi.IMP_MPI_SwigPyIterator_next(self)
166 """__next__(IMP_MPI_SwigPyIterator self) -> PyObject *"""
167 return _IMP_mpi.IMP_MPI_SwigPyIterator___next__(self)
171 """previous(IMP_MPI_SwigPyIterator self) -> PyObject *"""
172 return _IMP_mpi.IMP_MPI_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
177 return _IMP_mpi.IMP_MPI_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
182 return _IMP_mpi.IMP_MPI_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
187 return _IMP_mpi.IMP_MPI_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
192 return _IMP_mpi.IMP_MPI_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
197 return _IMP_mpi.IMP_MPI_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
202 return _IMP_mpi.IMP_MPI_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator
208 __sub__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_mpi.IMP_MPI_SwigPyIterator___sub__(self, *args)
214 IMP_MPI_SwigPyIterator_swigregister = _IMP_mpi.IMP_MPI_SwigPyIterator_swigregister
215 IMP_MPI_SwigPyIterator_swigregister(IMP_MPI_SwigPyIterator)
223 IMP_DEBUG = _IMP_mpi.IMP_DEBUG
224 IMP_RELEASE = _IMP_mpi.IMP_RELEASE
225 IMP_SILENT = _IMP_mpi.IMP_SILENT
226 IMP_PROGRESS = _IMP_mpi.IMP_PROGRESS
227 IMP_TERSE = _IMP_mpi.IMP_TERSE
228 IMP_VERBOSE = _IMP_mpi.IMP_VERBOSE
229 IMP_MEMORY = _IMP_mpi.IMP_MEMORY
230 IMP_NONE = _IMP_mpi.IMP_NONE
231 IMP_USAGE = _IMP_mpi.IMP_USAGE
232 IMP_INTERNAL = _IMP_mpi.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_mpi.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_mpi.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_mpi.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_mpi.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_mpi.IMPKERNEL_SHOW_WARNINGS
245 class _DirectorObjects(object):
246 """@internal Simple class to keep references to director objects
247 to prevent premature deletion."""
250 def register(self, obj):
251 """Take a reference to a director object; will only work for
252 refcounted C++ classes"""
253 if hasattr(obj,
'get_ref_count'):
254 self._objects.append(obj)
256 """Only drop our reference and allow cleanup by Python if no other
257 Python references exist (we hold 3 references: one in self._objects,
258 one in x, and one in the argument list for getrefcount) *and* no
259 other C++ references exist (the Python object always holds one)"""
260 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
261 or x.get_ref_count() > 1]
265 def get_object_count(self):
266 """Get number of director objects (useful for testing only)"""
267 return len(self._objects)
268 _director_objects = _DirectorObjects()
270 class _ostream(object):
271 """Proxy of C++ std::ostream class."""
273 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
275 def __init__(self, *args, **kwargs):
276 raise AttributeError(
"No constructor defined")
277 __repr__ = _swig_repr
279 def write(self, osa_buf):
280 """write(_ostream self, char const * osa_buf)"""
281 return _IMP_mpi._ostream_write(self, osa_buf)
283 _ostream_swigregister = _IMP_mpi._ostream_swigregister
284 _ostream_swigregister(_ostream)
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_mpi.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_mpi.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_mpi.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_mpi.IMP_C_OPEN_BINARY
291 IMP_MPI_HAS_BOOST_FILESYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM
292 IMP_MPI_HAS_BOOST_PROGRAMOPTIONS = _IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS
293 IMP_MPI_HAS_BOOST_RANDOM = _IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM
294 IMP_MPI_HAS_BOOST_SYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM
295 IMP_MPI_HAS_NUMPY = _IMP_mpi.IMP_MPI_HAS_NUMPY
296 IMPMPI_SHOW_WARNINGS = _IMP_mpi.IMPMPI_SHOW_WARNINGS
298 _object_types.append(
"ReplicaExchange")
301 def _object_cast_to_ReplicaExchange(o):
302 """_object_cast_to_ReplicaExchange(Object o) -> ReplicaExchange"""
303 return _IMP_mpi._object_cast_to_ReplicaExchange(o)
305 """Proxy of C++ IMP::mpi::ReplicaExchange class."""
307 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
310 """__init__(IMP::mpi::ReplicaExchange self) -> ReplicaExchange"""
311 this = _IMP_mpi.new_ReplicaExchange()
313 self.this.append(this)
314 except __builtin__.Exception:
317 def set_my_parameter(self, key, values):
318 """set_my_parameter(ReplicaExchange self, std::string key, IMP::Floats values)"""
319 return _IMP_mpi.ReplicaExchange_set_my_parameter(self, key, values)
322 def get_my_parameter(self, key):
323 """get_my_parameter(ReplicaExchange self, std::string key) -> IMP::Floats"""
324 return _IMP_mpi.ReplicaExchange_get_my_parameter(self, key)
327 def get_friend_index(self, istep):
328 """get_friend_index(ReplicaExchange self, int istep) -> int"""
329 return _IMP_mpi.ReplicaExchange_get_friend_index(self, istep)
332 def get_exchange_array(self):
333 """get_exchange_array(ReplicaExchange self) -> IMP::Ints"""
334 return _IMP_mpi.ReplicaExchange_get_exchange_array(self)
337 def get_friend_parameter(self, key, findex):
338 """get_friend_parameter(ReplicaExchange self, std::string key, int findex) -> IMP::Floats"""
339 return _IMP_mpi.ReplicaExchange_get_friend_parameter(self, key, findex)
342 def do_exchange(self, myscore0, myscore1, findex):
343 """do_exchange(ReplicaExchange self, double myscore0, double myscore1, int findex) -> bool"""
344 return _IMP_mpi.ReplicaExchange_do_exchange(self, myscore0, myscore1, findex)
347 def create_temperatures(self, tmin, tmax, nrep):
348 """create_temperatures(ReplicaExchange self, double tmin, double tmax, int nrep) -> IMP::Floats"""
349 return _IMP_mpi.ReplicaExchange_create_temperatures(self, tmin, tmax, nrep)
352 def get_my_index(self):
353 """get_my_index(ReplicaExchange self) -> int"""
354 return _IMP_mpi.ReplicaExchange_get_my_index(self)
357 def get_number_of_replicas(self):
358 """get_number_of_replicas(ReplicaExchange self) -> int"""
359 return _IMP_mpi.ReplicaExchange_get_number_of_replicas(self)
362 def get_version_info(self):
363 """get_version_info(ReplicaExchange self) -> VersionInfo"""
364 return _IMP_mpi.ReplicaExchange_get_version_info(self)
368 """__str__(ReplicaExchange self) -> std::string"""
369 return _IMP_mpi.ReplicaExchange___str__(self)
373 """__repr__(ReplicaExchange self) -> std::string"""
374 return _IMP_mpi.ReplicaExchange___repr__(self)
379 return _object_cast_to_ReplicaExchange(o)
381 ReplicaExchange_swigregister = _IMP_mpi.ReplicaExchange_swigregister
382 ReplicaExchange_swigregister(ReplicaExchange)
386 """get_module_version() -> std::string const"""
387 return _IMP_mpi.get_module_version()
390 """get_example_path(std::string fname) -> std::string"""
391 return _IMP_mpi.get_example_path(fname)
394 """get_data_path(std::string fname) -> std::string"""
395 return _IMP_mpi.get_data_path(fname)
397 from .
import _version_check
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_module_version()
Return the version of this module, as a string.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Common base class for heavy weight IMP objects.