misc/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.10
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

# This wrapper is part of IMP,
# Copyright 2007-2020 IMP Inventors. All rights reserved.

from __future__ import print_function, division, absolute_import




from sys import version_info as _swig_python_version_info
if _swig_python_version_info >= (2, 7, 0):
    def swig_import_helper():
        import importlib
        pkg = __name__.rpartition('.')[0]
        mname = '.'.join((pkg, '_IMP_misc')).lstrip('.')
        try:
            return importlib.import_module(mname)
        except ImportError:
            return importlib.import_module('_IMP_misc')
    _IMP_misc = swig_import_helper()
    del swig_import_helper
elif _swig_python_version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_misc', [dirname(__file__)])
        except ImportError:
            import _IMP_misc
            return _IMP_misc
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_misc', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_misc = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_misc
del _swig_python_version_info
try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        object.__setattr__(self, name, value)
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr(self, class_type, name):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)


def _swig_setattr_nondynamic_method(set):
    def set_attr(self, name, value):
        if (name == "thisown"):
            return self.this.own(value)
        if hasattr(self, name) or (name == "this"):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add attributes to %s" % self)
    return set_attr


try:
    import weakref
    weakref_proxy = weakref.proxy
except __builtin__.Exception:
    weakref_proxy = lambda x: x


class IMP_MISC_SwigPyIterator(object):
    """Proxy of C++ swig::IMP_MISC_SwigPyIterator class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_misc.delete_IMP_MISC_SwigPyIterator
    __del__ = lambda self: None

    def value(self):
        """value(IMP_MISC_SwigPyIterator self) -> PyObject *"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_value(self)


    def incr(self, n=1):
        """
        incr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator
        incr(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator
        """
        return _IMP_misc.IMP_MISC_SwigPyIterator_incr(self, n)


    def decr(self, n=1):
        """
        decr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator
        decr(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator
        """
        return _IMP_misc.IMP_MISC_SwigPyIterator_decr(self, n)


    def distance(self, x):
        """distance(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_distance(self, x)


    def equal(self, x):
        """equal(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_equal(self, x)


    def copy(self):
        """copy(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_copy(self)


    def next(self):
        """next(IMP_MISC_SwigPyIterator self) -> PyObject *"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_next(self)


    def __next__(self):
        """__next__(IMP_MISC_SwigPyIterator self) -> PyObject *"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___next__(self)


    def previous(self):
        """previous(IMP_MISC_SwigPyIterator self) -> PyObject *"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_previous(self)


    def advance(self, n):
        """advance(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
        return _IMP_misc.IMP_MISC_SwigPyIterator_advance(self, n)


    def __eq__(self, x):
        """__eq__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___eq__(self, x)


    def __ne__(self, x):
        """__ne__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___ne__(self, x)


    def __iadd__(self, n):
        """__iadd__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___iadd__(self, n)


    def __isub__(self, n):
        """__isub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___isub__(self, n)


    def __add__(self, n):
        """__add__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
        return _IMP_misc.IMP_MISC_SwigPyIterator___add__(self, n)


    def __sub__(self, *args):
        """
        __sub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator
        __sub__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_misc.IMP_MISC_SwigPyIterator___sub__(self, *args)

    def __iter__(self):
        return self
IMP_MISC_SwigPyIterator_swigregister = _IMP_misc.IMP_MISC_SwigPyIterator_swigregister
IMP_MISC_SwigPyIterator_swigregister(IMP_MISC_SwigPyIterator)


_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_misc.IMP_DEBUG
IMP_RELEASE = _IMP_misc.IMP_RELEASE
IMP_SILENT = _IMP_misc.IMP_SILENT
IMP_PROGRESS = _IMP_misc.IMP_PROGRESS
IMP_TERSE = _IMP_misc.IMP_TERSE
IMP_VERBOSE = _IMP_misc.IMP_VERBOSE
IMP_MEMORY = _IMP_misc.IMP_MEMORY
IMP_NONE = _IMP_misc.IMP_NONE
IMP_USAGE = _IMP_misc.IMP_USAGE
IMP_INTERNAL = _IMP_misc.IMP_INTERNAL
IMP_KERNEL_HAS_LOG4CXX = _IMP_misc.IMP_KERNEL_HAS_LOG4CXX
IMP_COMPILER_HAS_AUTO = _IMP_misc.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_misc.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_misc.IMP_COMPILER_HAS_UNIQUE_PTR
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_misc.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_NUMPY = _IMP_misc.IMP_KERNEL_HAS_NUMPY
IMP_KERNEL_HAS_GPERFTOOLS = _IMP_misc.IMP_KERNEL_HAS_GPERFTOOLS
IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
IMPKERNEL_SHOW_WARNINGS = _IMP_misc.IMPKERNEL_SHOW_WARNINGS

import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    """Proxy of C++ std::ostream class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_misc._ostream_write(self, osa_buf)

_ostream_swigregister = _IMP_misc._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_misc.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_misc.IMP_COMPILER_HAS_FINAL
IMP_HAS_NOEXCEPT = _IMP_misc.IMP_HAS_NOEXCEPT
IMP_C_OPEN_BINARY = _IMP_misc.IMP_C_OPEN_BINARY
import IMP
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_misc.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_SYSTEM
IMP_CGAL_HAS_NUMPY = _IMP_misc.IMP_CGAL_HAS_NUMPY
IMPCGAL_SHOW_WARNINGS = _IMP_misc.IMPCGAL_SHOW_WARNINGS
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_NUMPY = _IMP_misc.IMP_ALGEBRA_HAS_NUMPY
IMP_ALGEBRA_HAS_ANN = _IMP_misc.IMP_ALGEBRA_HAS_ANN
IMPALGEBRA_SHOW_WARNINGS = _IMP_misc.IMPALGEBRA_SHOW_WARNINGS
import IMP.algebra
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_misc.IMP_DISPLAY_HAS_IMP_CGAL
IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_RANDOM
IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_SYSTEM
IMP_DISPLAY_HAS_CGAL = _IMP_misc.IMP_DISPLAY_HAS_CGAL
IMP_DISPLAY_HAS_NUMPY = _IMP_misc.IMP_DISPLAY_HAS_NUMPY
IMPDISPLAY_SHOW_WARNINGS = _IMP_misc.IMPDISPLAY_SHOW_WARNINGS
import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_CGAL
IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_HDF5
IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_NUMPY
IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_misc.IMPSCOREFUNCTOR_SHOW_WARNINGS
import IMP.score_functor
IMP_CORE_HAS_IMP_CGAL = _IMP_misc.IMP_CORE_HAS_IMP_CGAL
IMP_CORE_HAS_IMP_KERNEL = _IMP_misc.IMP_CORE_HAS_IMP_KERNEL
IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_FILESYSTEM
IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
IMP_CORE_HAS_BOOST_RANDOM = _IMP_misc.IMP_CORE_HAS_BOOST_RANDOM
IMP_CORE_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_SYSTEM
IMP_CORE_HAS_CGAL = _IMP_misc.IMP_CORE_HAS_CGAL
IMP_CORE_HAS_HDF5 = _IMP_misc.IMP_CORE_HAS_HDF5
IMP_CORE_HAS_NUMPY = _IMP_misc.IMP_CORE_HAS_NUMPY
IMPCORE_SHOW_WARNINGS = _IMP_misc.IMPCORE_SHOW_WARNINGS
import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_misc.IMP_CONTAINER_HAS_IMP_ALGEBRA
IMP_CONTAINER_HAS_IMP_CGAL = _IMP_misc.IMP_CONTAINER_HAS_IMP_CGAL
IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_misc.IMP_CONTAINER_HAS_IMP_DISPLAY
IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_misc.IMP_CONTAINER_HAS_IMP_KERNEL
IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_RANDOM
IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_SYSTEM
IMP_CONTAINER_HAS_CGAL = _IMP_misc.IMP_CONTAINER_HAS_CGAL
IMP_CONTAINER_HAS_HDF5 = _IMP_misc.IMP_CONTAINER_HAS_HDF5
IMP_CONTAINER_HAS_NUMPY = _IMP_misc.IMP_CONTAINER_HAS_NUMPY
IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_misc.IMP_CONTAINER_HAS_PYTHON_IHM
IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_misc.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_misc.IMP_CONTAINER_HAS_ROBIN_MAP
IMPCONTAINER_SHOW_WARNINGS = _IMP_misc.IMPCONTAINER_SHOW_WARNINGS
import IMP.container
IMP_ATOM_HAS_IMP_CGAL = _IMP_misc.IMP_ATOM_HAS_IMP_CGAL
IMP_ATOM_HAS_IMP_KERNEL = _IMP_misc.IMP_ATOM_HAS_IMP_KERNEL
IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
IMP_ATOM_HAS_BOOST_RANDOM = _IMP_misc.IMP_ATOM_HAS_BOOST_RANDOM
IMP_ATOM_HAS_BOOST_REGEX = _IMP_misc.IMP_ATOM_HAS_BOOST_REGEX
IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ATOM_HAS_BOOST_SYSTEM
IMP_ATOM_HAS_CGAL = _IMP_misc.IMP_ATOM_HAS_CGAL
IMP_ATOM_HAS_HDF5 = _IMP_misc.IMP_ATOM_HAS_HDF5
IMP_ATOM_HAS_NUMPY = _IMP_misc.IMP_ATOM_HAS_NUMPY
IMP_ATOM_HAS_PYTHON_IHM = _IMP_misc.IMP_ATOM_HAS_PYTHON_IHM
IMPATOM_SHOW_WARNINGS = _IMP_misc.IMPATOM_SHOW_WARNINGS
IMP_ATOM_TYPE_INDEX = _IMP_misc.IMP_ATOM_TYPE_INDEX
IMP_RESIDUE_TYPE_INDEX = _IMP_misc.IMP_RESIDUE_TYPE_INDEX
IMP_HIERARCHY_TYPE_INDEX = _IMP_misc.IMP_HIERARCHY_TYPE_INDEX
IMP_CHAIN_TYPE_INDEX = _IMP_misc.IMP_CHAIN_TYPE_INDEX
import IMP.atom
IMP_MISC_HAS_IMP_ALGEBRA = _IMP_misc.IMP_MISC_HAS_IMP_ALGEBRA
IMP_MISC_HAS_IMP_CGAL = _IMP_misc.IMP_MISC_HAS_IMP_CGAL
IMP_MISC_HAS_IMP_CONTAINER = _IMP_misc.IMP_MISC_HAS_IMP_CONTAINER
IMP_MISC_HAS_IMP_DISPLAY = _IMP_misc.IMP_MISC_HAS_IMP_DISPLAY
IMP_MISC_HAS_IMP_KERNEL = _IMP_misc.IMP_MISC_HAS_IMP_KERNEL
IMP_MISC_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_MISC_HAS_IMP_SCORE_FUNCTOR
IMP_MISC_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_FILESYSTEM
IMP_MISC_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_MISC_HAS_BOOST_PROGRAMOPTIONS
IMP_MISC_HAS_BOOST_RANDOM = _IMP_misc.IMP_MISC_HAS_BOOST_RANDOM
IMP_MISC_HAS_BOOST_REGEX = _IMP_misc.IMP_MISC_HAS_BOOST_REGEX
IMP_MISC_HAS_BOOST_SYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_SYSTEM
IMP_MISC_HAS_CGAL = _IMP_misc.IMP_MISC_HAS_CGAL
IMP_MISC_HAS_HDF5 = _IMP_misc.IMP_MISC_HAS_HDF5
IMP_MISC_HAS_NUMPY = _IMP_misc.IMP_MISC_HAS_NUMPY
IMP_MISC_HAS_PYTHON_IHM = _IMP_misc.IMP_MISC_HAS_PYTHON_IHM
IMPMISC_SHOW_WARNINGS = _IMP_misc.IMPMISC_SHOW_WARNINGS

_object_types.append("WormLikeChain")


def _object_cast_to_WormLikeChain(o):
    """_object_cast_to_WormLikeChain(Object o) -> WormLikeChain"""
    return _IMP_misc._object_cast_to_WormLikeChain(o)

_object_types.append("FreelyJointedChain")


def _object_cast_to_FreelyJointedChain(o):
    """_object_cast_to_FreelyJointedChain(Object o) -> FreelyJointedChain"""
    return _IMP_misc._object_cast_to_FreelyJointedChain(o)

_object_types.append("StateAdaptor")


def _object_cast_to_StateAdaptor(o):
    """_object_cast_to_StateAdaptor(Object o) -> StateAdaptor"""
    return _IMP_misc._object_cast_to_StateAdaptor(o)

_object_types.append("CommonEndpointPairFilter")


def _object_cast_to_CommonEndpointPairFilter(o):
    """_object_cast_to_CommonEndpointPairFilter(Object o) -> CommonEndpointPairFilter"""
    return _IMP_misc._object_cast_to_CommonEndpointPairFilter(o)

_object_types.append("LogPairScore")


def _object_cast_to_LogPairScore(o):
    """_object_cast_to_LogPairScore(Object o) -> LogPairScore"""
    return _IMP_misc._object_cast_to_LogPairScore(o)

_object_types.append("LowestRefinedPairScore")


def _object_cast_to_LowestRefinedPairScore(o):
    """_object_cast_to_LowestRefinedPairScore(Object o) -> LowestRefinedPairScore"""
    return _IMP_misc._object_cast_to_LowestRefinedPairScore(o)

_object_types.append("SoftCylinderPairScore")


def _object_cast_to_SoftCylinderPairScore(o):
    """_object_cast_to_SoftCylinderPairScore(Object o) -> SoftCylinderPairScore"""
    return _IMP_misc._object_cast_to_SoftCylinderPairScore(o)

_object_types.append("DecayPairContainerOptimizerState")


def _object_cast_to_DecayPairContainerOptimizerState(o):
    """_object_cast_to_DecayPairContainerOptimizerState(Object o) -> DecayPairContainerOptimizerState"""
    return _IMP_misc._object_cast_to_DecayPairContainerOptimizerState(o)

def CustomXYZRs(l=[]):
    return [CustomXYZR(x) for x in l]
_plural_types.append("CustomXYZRs")


_value_types.append("CustomXYZR")

class WormLikeChain(IMP.UnaryFunction):
    """Proxy of C++ IMP::misc::WormLikeChain class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, l_max, lp):
        """__init__(IMP::misc::WormLikeChain self, IMP::Float l_max, IMP::Float lp) -> WormLikeChain"""
        this = _IMP_misc.new_WormLikeChain(l_max, lp)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_version_info(self):
        """get_version_info(WormLikeChain self) -> VersionInfo"""
        return _IMP_misc.WormLikeChain_get_version_info(self)


    def do_show(self, out):
        """do_show(WormLikeChain self, _ostream out)"""
        return _IMP_misc.WormLikeChain_do_show(self, out)


    def __str__(self):
        """__str__(WormLikeChain self) -> std::string"""
        return _IMP_misc.WormLikeChain___str__(self)


    def __repr__(self):
        """__repr__(WormLikeChain self) -> std::string"""
        return _IMP_misc.WormLikeChain___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_WormLikeChain(o)

WormLikeChain_swigregister = _IMP_misc.WormLikeChain_swigregister
WormLikeChain_swigregister(WormLikeChain)

class FreelyJointedChain(IMP.UnaryFunction):
    """Proxy of C++ IMP::misc::FreelyJointedChain class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, link_num, link_length):
        """__init__(IMP::misc::FreelyJointedChain self, int link_num, double link_length) -> FreelyJointedChain"""
        this = _IMP_misc.new_FreelyJointedChain(link_num, link_length)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_version_info(self):
        """get_version_info(FreelyJointedChain self) -> VersionInfo"""
        return _IMP_misc.FreelyJointedChain_get_version_info(self)


    def get_link_number(self):
        """get_link_number(FreelyJointedChain self) -> int"""
        return _IMP_misc.FreelyJointedChain_get_link_number(self)


    def get_link_length(self):
        """get_link_length(FreelyJointedChain self) -> double"""
        return _IMP_misc.FreelyJointedChain_get_link_length(self)


    def set_link_number(self, N):
        """set_link_number(FreelyJointedChain self, int N)"""
        return _IMP_misc.FreelyJointedChain_set_link_number(self, N)


    def set_link_length(self, b):
        """set_link_length(FreelyJointedChain self, double b)"""
        return _IMP_misc.FreelyJointedChain_set_link_length(self, b)


    def get_distance_at_minimum(self):
        """get_distance_at_minimum(FreelyJointedChain self) -> double"""
        return _IMP_misc.FreelyJointedChain_get_distance_at_minimum(self)


    def get_average_distance(self):
        """get_average_distance(FreelyJointedChain self) -> double"""
        return _IMP_misc.FreelyJointedChain_get_average_distance(self)


    def __str__(self):
        """__str__(FreelyJointedChain self) -> std::string"""
        return _IMP_misc.FreelyJointedChain___str__(self)


    def __repr__(self):
        """__repr__(FreelyJointedChain self) -> std::string"""
        return _IMP_misc.FreelyJointedChain___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_FreelyJointedChain(o)

FreelyJointedChain_swigregister = _IMP_misc.FreelyJointedChain_swigregister
FreelyJointedChain_swigregister(FreelyJointedChain)

class LowestRefinedPairScore(IMP.PairScore):
    """Proxy of C++ IMP::misc::LowestRefinedPairScore class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, r, f):
        """__init__(IMP::misc::LowestRefinedPairScore self, Refiner r, PairScore f) -> LowestRefinedPairScore"""
        this = _IMP_misc.new_LowestRefinedPairScore(r, f)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_get_inputs(self, m, pis):
        """do_get_inputs(LowestRefinedPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.LowestRefinedPairScore_do_get_inputs(self, m, pis)


    def get_version_info(self):
        """get_version_info(LowestRefinedPairScore self) -> VersionInfo"""
        return _IMP_misc.LowestRefinedPairScore_get_version_info(self)


    def __str__(self):
        """__str__(LowestRefinedPairScore self) -> std::string"""
        return _IMP_misc.LowestRefinedPairScore___str__(self)


    def __repr__(self):
        """__repr__(LowestRefinedPairScore self) -> std::string"""
        return _IMP_misc.LowestRefinedPairScore___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_LowestRefinedPairScore(o)

LowestRefinedPairScore_swigregister = _IMP_misc.LowestRefinedPairScore_swigregister
LowestRefinedPairScore_swigregister(LowestRefinedPairScore)

class LogPairScore(IMP.PairScore):
    """Proxy of C++ IMP::misc::LogPairScore class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::misc::LogPairScore self) -> LogPairScore"""
        this = _IMP_misc.new_LogPairScore()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_get_inputs(self, arg2, arg3):
        """do_get_inputs(LogPairScore self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.LogPairScore_do_get_inputs(self, arg2, arg3)


    def get_version_info(self):
        """get_version_info(LogPairScore self) -> VersionInfo"""
        return _IMP_misc.LogPairScore_get_version_info(self)


    def get_particle_pairs(self):
        """get_particle_pairs(LogPairScore self) -> IMP::ParticlePairsTemp"""
        return _IMP_misc.LogPairScore_get_particle_pairs(self)


    def clear(self):
        """clear(LogPairScore self)"""
        return _IMP_misc.LogPairScore_clear(self)


    def get_contains(self, pp):
        """get_contains(LogPairScore self, IMP::ParticlePair const & pp) -> bool"""
        return _IMP_misc.LogPairScore_get_contains(self, pp)


    def __str__(self):
        """__str__(LogPairScore self) -> std::string"""
        return _IMP_misc.LogPairScore___str__(self)


    def __repr__(self):
        """__repr__(LogPairScore self) -> std::string"""
        return _IMP_misc.LogPairScore___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_LogPairScore(o)

LogPairScore_swigregister = _IMP_misc.LogPairScore_swigregister
LogPairScore_swigregister(LogPairScore)

class StateAdaptor(IMP.ScoreState):
    """Proxy of C++ IMP::misc::StateAdaptor class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, m, before, after):
        """__init__(IMP::misc::StateAdaptor self, Model m, OptimizerState before, OptimizerState after) -> StateAdaptor"""
        this = _IMP_misc.new_StateAdaptor(m, before, after)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_before_evaluate(self):
        """do_before_evaluate(StateAdaptor self)"""
        return _IMP_misc.StateAdaptor_do_before_evaluate(self)


    def do_after_evaluate(self, da):
        """do_after_evaluate(StateAdaptor self, DerivativeAccumulator da)"""
        return _IMP_misc.StateAdaptor_do_after_evaluate(self, da)


    def do_get_inputs(self):
        """do_get_inputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.StateAdaptor_do_get_inputs(self)


    def do_get_outputs(self):
        """do_get_outputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.StateAdaptor_do_get_outputs(self)


    def get_version_info(self):
        """get_version_info(StateAdaptor self) -> VersionInfo"""
        return _IMP_misc.StateAdaptor_get_version_info(self)


    def __str__(self):
        """__str__(StateAdaptor self) -> std::string"""
        return _IMP_misc.StateAdaptor___str__(self)


    def __repr__(self):
        """__repr__(StateAdaptor self) -> std::string"""
        return _IMP_misc.StateAdaptor___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_StateAdaptor(o)

StateAdaptor_swigregister = _IMP_misc.StateAdaptor_swigregister
StateAdaptor_swigregister(StateAdaptor)

class CommonEndpointPairFilter(IMP.PairPredicate):
    """Proxy of C++ IMP::misc::CommonEndpointPairFilter class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::misc::CommonEndpointPairFilter self) -> CommonEndpointPairFilter"""
        this = _IMP_misc.new_CommonEndpointPairFilter()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_get_inputs(self, m, pis):
        """do_get_inputs(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.CommonEndpointPairFilter_do_get_inputs(self, m, pis)


    def get_value(self, *args):
        """
        get_value(CommonEndpointPairFilter self, IMP::ParticlePair const & a) -> int
        get_value(CommonEndpointPairFilter self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
        """
        return _IMP_misc.CommonEndpointPairFilter_get_value(self, *args)


    def get_value_index(self, *args):
        """
        get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPair const & p) -> int
        get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
        """
        return _IMP_misc.CommonEndpointPairFilter_get_value_index(self, *args)


    def get_version_info(self):
        """get_version_info(CommonEndpointPairFilter self) -> VersionInfo"""
        return _IMP_misc.CommonEndpointPairFilter_get_version_info(self)


    def __str__(self):
        """__str__(CommonEndpointPairFilter self) -> std::string"""
        return _IMP_misc.CommonEndpointPairFilter___str__(self)


    def __repr__(self):
        """__repr__(CommonEndpointPairFilter self) -> std::string"""
        return _IMP_misc.CommonEndpointPairFilter___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_CommonEndpointPairFilter(o)

CommonEndpointPairFilter_swigregister = _IMP_misc.CommonEndpointPairFilter_swigregister
CommonEndpointPairFilter_swigregister(CommonEndpointPairFilter)

class CustomXYZR(IMP.core.XYZ):
    """Proxy of C++ IMP::misc::CustomXYZR class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def get_decorator_traits(self):
        """get_decorator_traits(CustomXYZR self) -> FloatKey"""
        return _IMP_misc.CustomXYZR_get_decorator_traits(self)


    def get_default_decorator_traits():
        """get_default_decorator_traits() -> FloatKey"""
        return _IMP_misc.CustomXYZR_get_default_decorator_traits()

    get_default_decorator_traits = staticmethod(get_default_decorator_traits)

    def __init__(self, *args):
        """
        __init__(IMP::misc::CustomXYZR self) -> CustomXYZR
        __init__(IMP::misc::CustomXYZR self, Model m, ParticleIndex id, FloatKey tr) -> CustomXYZR
        __init__(IMP::misc::CustomXYZR self, Model m, ParticleIndex id) -> CustomXYZR
        __init__(IMP::misc::CustomXYZR self, _ParticleAdaptor d, FloatKey tr) -> CustomXYZR
        __init__(IMP::misc::CustomXYZR self, _ParticleAdaptor d) -> CustomXYZR
        """
        this = _IMP_misc.new_CustomXYZR(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def show(self, *args):
        """
        show(CustomXYZR self, _ostream out)
        show(CustomXYZR self)
        """
        return _IMP_misc.CustomXYZR_show(self, *args)


    def setup_particle(*args):
        """
        setup_particle(Model m, ParticleIndex pi, FloatKey tr) -> CustomXYZR
        setup_particle(Model m, ParticleIndex pi) -> CustomXYZR
        setup_particle(_ParticleAdaptor d, FloatKey tr) -> CustomXYZR
        setup_particle(_ParticleAdaptor d) -> CustomXYZR
        setup_particle(Model m, ParticleIndex pi, double radius, FloatKey tr) -> CustomXYZR
        setup_particle(Model m, ParticleIndex pi, double radius) -> CustomXYZR
        setup_particle(_ParticleAdaptor d, double radius, FloatKey tr) -> CustomXYZR
        setup_particle(_ParticleAdaptor d, double radius) -> CustomXYZR
        setup_particle(Model m, ParticleIndex pi, Sphere3D ball, FloatKey tr) -> CustomXYZR
        setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> CustomXYZR
        setup_particle(_ParticleAdaptor d, Sphere3D ball, FloatKey tr) -> CustomXYZR
        setup_particle(_ParticleAdaptor d, Sphere3D ball) -> CustomXYZR
        """
        return _IMP_misc.CustomXYZR_setup_particle(*args)

    setup_particle = staticmethod(setup_particle)

    def get_is_setup(*args):
        """
        get_is_setup(_ParticleAdaptor p, FloatKey tr) -> bool
        get_is_setup(_ParticleAdaptor p) -> bool
        get_is_setup(Model m, ParticleIndex pi, FloatKey radius_key) -> bool
        get_is_setup(Model m, ParticleIndex pi) -> bool
        """
        return _IMP_misc.CustomXYZR_get_is_setup(*args)

    get_is_setup = staticmethod(get_is_setup)

    def get_radius(self):
        """get_radius(CustomXYZR self) -> IMP::Float"""
        return _IMP_misc.CustomXYZR_get_radius(self)


    def set_radius(self, t):
        """set_radius(CustomXYZR self, IMP::Float t)"""
        return _IMP_misc.CustomXYZR_set_radius(self, t)


    def get_sphere(self):
        """get_sphere(CustomXYZR self) -> Sphere3D"""
        return _IMP_misc.CustomXYZR_get_sphere(self)


    def set_sphere(self, s):
        """set_sphere(CustomXYZR self, Sphere3D s)"""
        return _IMP_misc.CustomXYZR_set_sphere(self, s)


    def get_default_radius_key():
        """get_default_radius_key() -> FloatKey"""
        return _IMP_misc.CustomXYZR_get_default_radius_key()

    get_default_radius_key = staticmethod(get_default_radius_key)

    def add_to_radius_derivative(self, v, d):
        """add_to_radius_derivative(CustomXYZR self, double v, DerivativeAccumulator d)"""
        return _IMP_misc.CustomXYZR_add_to_radius_derivative(self, v, d)


    def get_traits(self):
        """get_traits(CustomXYZR self) -> FloatKey"""
        return _IMP_misc.CustomXYZR_get_traits(self)


    def add_attribute(self, *args):
        """
        add_attribute(CustomXYZR self, FloatKey k, IMP::Float v, bool opt)
        add_attribute(CustomXYZR self, FloatKey a0, IMP::Float a1)
        add_attribute(CustomXYZR self, IntKey a0, IMP::Int a1)
        add_attribute(CustomXYZR self, StringKey a0, IMP::String a1)
        add_attribute(CustomXYZR self, ParticleIndexKey a0, Particle a1)
        add_attribute(CustomXYZR self, ObjectKey a0, Object a1)
        """
        return _IMP_misc.CustomXYZR_add_attribute(self, *args)


    def get_value(self, *args):
        """
        get_value(CustomXYZR self, FloatKey a0) -> IMP::Float
        get_value(CustomXYZR self, IntKey a0) -> IMP::Int
        get_value(CustomXYZR self, StringKey a0) -> IMP::String
        get_value(CustomXYZR self, ParticleIndexKey a0) -> Particle
        get_value(CustomXYZR self, ObjectKey a0) -> Object
        """
        return _IMP_misc.CustomXYZR_get_value(self, *args)


    def set_value(self, *args):
        """
        set_value(CustomXYZR self, FloatKey a0, IMP::Float a1)
        set_value(CustomXYZR self, IntKey a0, IMP::Int a1)
        set_value(CustomXYZR self, StringKey a0, IMP::String a1)
        set_value(CustomXYZR self, ParticleIndexKey a0, Particle a1)
        set_value(CustomXYZR self, ObjectKey a0, Object a1)
        """
        return _IMP_misc.CustomXYZR_set_value(self, *args)


    def remove_attribute(self, *args):
        """
        remove_attribute(CustomXYZR self, FloatKey a0)
        remove_attribute(CustomXYZR self, IntKey a0)
        remove_attribute(CustomXYZR self, StringKey a0)
        remove_attribute(CustomXYZR self, ParticleIndexKey a0)
        remove_attribute(CustomXYZR self, ObjectKey a0)
        """
        return _IMP_misc.CustomXYZR_remove_attribute(self, *args)


    def has_attribute(self, *args):
        """
        has_attribute(CustomXYZR self, FloatKey a0) -> bool
        has_attribute(CustomXYZR self, IntKey a0) -> bool
        has_attribute(CustomXYZR self, StringKey a0) -> bool
        has_attribute(CustomXYZR self, ParticleIndexKey a0) -> bool
        has_attribute(CustomXYZR self, ObjectKey a0) -> bool
        """
        return _IMP_misc.CustomXYZR_has_attribute(self, *args)


    def get_derivative(self, a0):
        """get_derivative(CustomXYZR self, FloatKey a0) -> double"""
        return _IMP_misc.CustomXYZR_get_derivative(self, a0)


    def get_name(self):
        """get_name(CustomXYZR self) -> std::string"""
        return _IMP_misc.CustomXYZR_get_name(self)


    def clear_caches(self):
        """clear_caches(CustomXYZR self)"""
        return _IMP_misc.CustomXYZR_clear_caches(self)


    def set_name(self, a0):
        """set_name(CustomXYZR self, std::string a0)"""
        return _IMP_misc.CustomXYZR_set_name(self, a0)


    def set_check_level(self, a0):
        """set_check_level(CustomXYZR self, IMP::CheckLevel a0)"""
        return _IMP_misc.CustomXYZR_set_check_level(self, a0)


    def add_to_derivative(self, a0, a1, a2):
        """add_to_derivative(CustomXYZR self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
        return _IMP_misc.CustomXYZR_add_to_derivative(self, a0, a1, a2)


    def set_is_optimized(self, a0, a1):
        """set_is_optimized(CustomXYZR self, FloatKey a0, bool a1)"""
        return _IMP_misc.CustomXYZR_set_is_optimized(self, a0, a1)


    def get_is_optimized(self, a0):
        """get_is_optimized(CustomXYZR self, FloatKey a0) -> bool"""
        return _IMP_misc.CustomXYZR_get_is_optimized(self, a0)


    def get_check_level(self):
        """get_check_level(CustomXYZR self) -> IMP::CheckLevel"""
        return _IMP_misc.CustomXYZR_get_check_level(self)


    def __eq__(self, *args):
        """
        __eq__(CustomXYZR self, CustomXYZR o) -> bool
        __eq__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___eq__(self, *args)


    def __ne__(self, *args):
        """
        __ne__(CustomXYZR self, CustomXYZR o) -> bool
        __ne__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___ne__(self, *args)


    def __le__(self, *args):
        """
        __le__(CustomXYZR self, CustomXYZR o) -> bool
        __le__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___le__(self, *args)


    def __lt__(self, *args):
        """
        __lt__(CustomXYZR self, CustomXYZR o) -> bool
        __lt__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___lt__(self, *args)


    def __ge__(self, *args):
        """
        __ge__(CustomXYZR self, CustomXYZR o) -> bool
        __ge__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___ge__(self, *args)


    def __gt__(self, *args):
        """
        __gt__(CustomXYZR self, CustomXYZR o) -> bool
        __gt__(CustomXYZR self, Particle d) -> bool
        """
        return _IMP_misc.CustomXYZR___gt__(self, *args)


    def __hash__(self):
        """__hash__(CustomXYZR self) -> std::size_t"""
        return _IMP_misc.CustomXYZR___hash__(self)


    def __str__(self):
        """__str__(CustomXYZR self) -> std::string"""
        return _IMP_misc.CustomXYZR___str__(self)


    def __repr__(self):
        """__repr__(CustomXYZR self) -> std::string"""
        return _IMP_misc.CustomXYZR___repr__(self)

    __swig_destroy__ = _IMP_misc.delete_CustomXYZR
    __del__ = lambda self: None
CustomXYZR_swigregister = _IMP_misc.CustomXYZR_swigregister
CustomXYZR_swigregister(CustomXYZR)

def CustomXYZR_get_default_decorator_traits():
    """CustomXYZR_get_default_decorator_traits() -> FloatKey"""
    return _IMP_misc.CustomXYZR_get_default_decorator_traits()

def CustomXYZR_setup_particle(*args):
    """
    setup_particle(Model m, ParticleIndex pi, FloatKey tr) -> CustomXYZR
    setup_particle(Model m, ParticleIndex pi) -> CustomXYZR
    setup_particle(_ParticleAdaptor d, FloatKey tr) -> CustomXYZR
    setup_particle(_ParticleAdaptor d) -> CustomXYZR
    setup_particle(Model m, ParticleIndex pi, double radius, FloatKey tr) -> CustomXYZR
    setup_particle(Model m, ParticleIndex pi, double radius) -> CustomXYZR
    setup_particle(_ParticleAdaptor d, double radius, FloatKey tr) -> CustomXYZR
    setup_particle(_ParticleAdaptor d, double radius) -> CustomXYZR
    setup_particle(Model m, ParticleIndex pi, Sphere3D ball, FloatKey tr) -> CustomXYZR
    setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> CustomXYZR
    setup_particle(_ParticleAdaptor d, Sphere3D ball, FloatKey tr) -> CustomXYZR
    CustomXYZR_setup_particle(_ParticleAdaptor d, Sphere3D ball) -> CustomXYZR
    """
    return _IMP_misc.CustomXYZR_setup_particle(*args)

def CustomXYZR_get_is_setup(*args):
    """
    get_is_setup(_ParticleAdaptor p, FloatKey tr) -> bool
    get_is_setup(_ParticleAdaptor p) -> bool
    get_is_setup(Model m, ParticleIndex pi, FloatKey radius_key) -> bool
    CustomXYZR_get_is_setup(Model m, ParticleIndex pi) -> bool
    """
    return _IMP_misc.CustomXYZR_get_is_setup(*args)

def CustomXYZR_get_default_radius_key():
    """CustomXYZR_get_default_radius_key() -> FloatKey"""
    return _IMP_misc.CustomXYZR_get_default_radius_key()


def __lshift__(out, n):
    """__lshift__(_ostream out, CustomXYZR n) -> _ostream"""
    return _IMP_misc.__lshift__(out, n)

def get_distance(a, b):
    """get_distance(CustomXYZR a, CustomXYZR b) -> double"""
    return _IMP_misc.get_distance(a, b)

def get_sphere_d_geometry(d):
    """get_sphere_d_geometry(CustomXYZR d) -> Sphere3D"""
    return _IMP_misc.get_sphere_d_geometry(d)

def set_sphere_d_geometry(d, v):
    """set_sphere_d_geometry(CustomXYZR d, Sphere3D v)"""
    return _IMP_misc.set_sphere_d_geometry(d, v)
class SoftCylinderPairScore(IMP.PairScore):
    """Proxy of C++ IMP::misc::SoftCylinderPairScore class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, k):
        """__init__(IMP::misc::SoftCylinderPairScore self, double k) -> SoftCylinderPairScore"""
        this = _IMP_misc.new_SoftCylinderPairScore(k)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_get_inputs(self, m, pis):
        """do_get_inputs(SoftCylinderPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
        return _IMP_misc.SoftCylinderPairScore_do_get_inputs(self, m, pis)


    def get_version_info(self):
        """get_version_info(SoftCylinderPairScore self) -> VersionInfo"""
        return _IMP_misc.SoftCylinderPairScore_get_version_info(self)


    def __str__(self):
        """__str__(SoftCylinderPairScore self) -> std::string"""
        return _IMP_misc.SoftCylinderPairScore___str__(self)


    def __repr__(self):
        """__repr__(SoftCylinderPairScore self) -> std::string"""
        return _IMP_misc.SoftCylinderPairScore___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_SoftCylinderPairScore(o)

SoftCylinderPairScore_swigregister = _IMP_misc.SoftCylinderPairScore_swigregister
SoftCylinderPairScore_swigregister(SoftCylinderPairScore)

class DecayPairContainerOptimizerState(IMP.OptimizerState):
    """Proxy of C++ IMP::misc::DecayPairContainerOptimizerState class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args):
        """
        __init__(IMP::misc::DecayPairContainerOptimizerState self, Model m, PairPredicate pred, IMP::ParticleIndexPairs const & initial_list, std::string name) -> DecayPairContainerOptimizerState
        __init__(IMP::misc::DecayPairContainerOptimizerState self, Model m, PairPredicate pred, IMP::ParticleIndexPairs const & initial_list) -> DecayPairContainerOptimizerState
        """
        this = _IMP_misc.new_DecayPairContainerOptimizerState(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_output_container(self):
        """get_output_container(DecayPairContainerOptimizerState self) -> PairContainer"""
        return _IMP_misc.DecayPairContainerOptimizerState_get_output_container(self)


    def do_update(self, call_num):
        """do_update(DecayPairContainerOptimizerState self, unsigned int call_num)"""
        return _IMP_misc.DecayPairContainerOptimizerState_do_update(self, call_num)


    def get_version_info(self):
        """get_version_info(DecayPairContainerOptimizerState self) -> VersionInfo"""
        return _IMP_misc.DecayPairContainerOptimizerState_get_version_info(self)


    def __str__(self):
        """__str__(DecayPairContainerOptimizerState self) -> std::string"""
        return _IMP_misc.DecayPairContainerOptimizerState___str__(self)


    def __repr__(self):
        """__repr__(DecayPairContainerOptimizerState self) -> std::string"""
        return _IMP_misc.DecayPairContainerOptimizerState___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_DecayPairContainerOptimizerState(o)

DecayPairContainerOptimizerState_swigregister = _IMP_misc.DecayPairContainerOptimizerState_swigregister
DecayPairContainerOptimizerState_swigregister(DecayPairContainerOptimizerState)


def get_module_version():
    """get_module_version() -> std::string const"""
    return _IMP_misc.get_module_version()

def get_example_path(fname):
    """get_example_path(std::string fname) -> std::string"""
    return _IMP_misc.get_example_path(fname)

def get_data_path(fname):
    """get_data_path(std::string fname) -> std::string"""
    return _IMP_misc.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()