Class IMP.pmi.macros.AnalysisReplicaExchange0: As of IMP release 2.8. See the IMP Deprecation Policy for more information about deprecation in IMP. Use AnalysisReplicaExchange instead
Member IMP.pmi.mmcif.ProtocolOutput.flush: As of IMP release 2.13. See the IMP Deprecation Policy for more information about deprecation in IMP. Use finalize() then the python-ihm API instead
Class IMP.pmi.restraints.em.CrossCorrelationRestraint: As of IMP release 2.13. See the IMP Deprecation Policy for more information about deprecation in IMP. If you use this class please let the PMI developers know.
Class IMP.pmi.tools.ThreeToOneConverter: As of IMP release 2.13.
Class IMP.pmi1.io.xltable.XLTable: As of IMP release 2.8.
Class IMP.pmi1.macros.AnalysisReplicaExchange0: As of IMP release 2.8. See the IMP Deprecation Policy for more information about deprecation in IMP. Use AnalysisReplicaExchange instead
Class IMP.pmi1.restraints.crosslinking.ConnectivityCrossLinkMS: As of IMP release 2.5.
Member IMP::core::PairConstraint::PairConstraint (PairModifier *before, PairDerivativeModifier *after, const ParticlePair &vt, std::string name="PairConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::QuadConstraint::QuadConstraint (QuadModifier *before, QuadDerivativeModifier *after, const ParticleQuad &vt, std::string name="QuadConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::SingletonConstraint::SingletonConstraint (SingletonModifier *before, SingletonDerivativeModifier *after, Particle *vt, std::string name="SingletonConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::core::TripletConstraint::TripletConstraint (TripletModifier *before, TripletDerivativeModifier *after, const ParticleTriplet &vt, std::string name="TripletConstraint %1%"): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the model/index constructor.
Member IMP::get_dependent_particles (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::get_required_score_states (ModelObject *p, const ModelObjectsTemp &all, const DependencyGraph &dg, const DependencyGraphVertexIndex &index): As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. You should act directly on the ModelObjects instead.
Member IMP::npctransport::SimulationData::get_fg_chains () const: As of IMP release 2.2. See the IMP Deprecation Policy for more information about deprecation in IMP., use get_fg_chain_roots() instead
Member IMP::PairContainer::get_particle_pair (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead and consider using the IMP_CONTAINER_FOREACH() macro.
Member IMP::PairContainer::get_particle_pairs () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead.
Member IMP::PairPredicate::get_value (const ParticlePair &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::PairPredicate::get_value (const ParticlePairsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::pmi::mmcif.read: As of IMP release 2.13. See the IMP Deprecation Policy for more information about deprecation in IMP. Use ihm.reader.read() instead with handlers=get_handlers()
Member IMP::QuadContainer::get_particle_quad (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead and consider using the IMP_CONTAINER_FOREACH() macro.
Member IMP::QuadContainer::get_particle_quads () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead.
Member IMP::QuadPredicate::get_value (const ParticleQuadsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::QuadPredicate::get_value (const ParticleQuad &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonContainer::get_particle (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead and consider using the IMP_CONTAINER_FOREACH() macro.
Member IMP::SingletonContainer::get_particles () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead.
Member IMP::SingletonPredicate::get_value (const ParticlesTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::SingletonPredicate::get_value (Particle *vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletContainer::get_particle_triplet (unsigned int i) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead and consider using the IMP_CONTAINER_FOREACH() macro.
Member IMP::TripletContainer::get_particle_triplets () const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead.
Member IMP::TripletPredicate::get_value (const ParticleTriplet &vt) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.
Member IMP::TripletPredicate::get_value (const ParticleTripletsTemp &o) const: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use the index based version.