density_analysis.h File Reference

density analysis tools, such as segmentation More...

#include <IMP/em/DensityMap.h>
#include <IMP/multifit/multifit_config.h>
#include <boost/graph/adjacency_list.hpp>
#include <boost/pending/disjoint_sets.hpp>
#include <boost/graph/incremental_components.hpp>
#include <boost/graph/graph_utility.hpp>

Include dependency graph for density_analysis.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::multifit
	Fitting atomic structures into a cryo-electron microscopy density map.

Functions
IntsList	IMP::multifit::get_connected_components (em::DensityMap *dmap, float threshold, float edge_threshold)
	Return connected components based on density values. More...
void	IMP::multifit::get_segmentation (em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
	Segment a density map using the anchor graph. More...
em::DensityMap *	IMP::multifit::remove_background (em::DensityMap *dmap, float threshold, float edge_threshold)
	Returns a map containing all density without the background. More...

Detailed Description

density analysis tools, such as segmentation

Copyright 2007-2020 IMP Inventors. All rights reserved.

Definition in file density_analysis.h.