| add_to_derivative(int i, Float v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| add_to_derivatives(const algebra::Vector3D &v, DerivativeAccumulator &d) | IMP::core::XYZ | |
| add_to_internal_derivatives(const algebra::Vector3D &deriv_parent, DerivativeAccumulator &da) | IMP::core::NonRigidMember | |
| add_to_internal_rotational_derivatives(const algebra::Vector4D &local_qderiv, const algebra::Rotation3D &rot_local_to_parent, const algebra::Rotation3D &rot_parent_to_global, DerivativeAccumulator &da) | IMP::core::NonRigidMember | |
| add_to_internal_rotational_derivatives(const algebra::Vector4D &qderiv, DerivativeAccumulator &da) | IMP::core::NonRigidMember | |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator) | IMP::Decorator | protected |
| Decorator() (defined in IMP::Decorator) | IMP::Decorator | protected |
| Decorator(ParticleAdaptor p) (defined in IMP::Decorator) | IMP::Decorator | explicitprotected |
| get_coordinate(int i) const | IMP::core::XYZ | |
| get_coordinate_key(unsigned int i) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| get_coordinates() const | IMP::core::XYZ | |
| get_coordinates_are_optimized() const | IMP::core::XYZ | |
| get_derivative(int i) const | IMP::core::XYZ | |
| get_derivatives() const | IMP::core::XYZ | |
| get_internal_coordinate_keys() (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | static |
| get_internal_coordinates() const | IMP::core::RigidBodyMember | |
| get_internal_derivatives() const | IMP::core::NonRigidMember | |
| get_internal_rotation_keys() (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | static |
| get_internal_rotational_derivatives() const | IMP::core::NonRigidMember | |
| get_internal_transformation() const | IMP::core::RigidBodyMember | |
| get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | static |
| get_is_setup(Model *m, ParticleIndex p) | IMP::core::NonRigidMember | static |
| IMP::core::RigidBodyMember::get_is_setup(Model *m, ParticleIndexAdaptor p) | IMP::core::RigidBodyMember | static |
| get_is_valid() const | IMP::Decorator | |
| get_model() const | IMP::Decorator | |
| get_particle() const | IMP::Decorator | |
| get_particle_index() const | IMP::Decorator | |
| get_rigid_body() const (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | |
| get_vector_to(const XYZ &b) const | IMP::core::XYZ | |
| get_x() const | IMP::core::XYZ | |
| get_xyz_keys() | IMP::core::XYZ | static |
| get_y() const | IMP::core::XYZ | |
| get_z() const | IMP::core::XYZ | |
| NonRigidMember() (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| NonRigidMember(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| NonRigidMember(const IMP::ParticleAdaptor &d) (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | explicit |
| operator Particle *() const (defined in IMP::Decorator) | IMP::Decorator | |
| operator ParticleIndex() const (defined in IMP::Decorator) | IMP::Decorator | |
| operator->() const (defined in IMP::Decorator) | IMP::Decorator | |
| RigidBodyMember() (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | |
| RigidBodyMember(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | |
| RigidBodyMember(const IMP::ParticleAdaptor &d) (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | explicit |
| set_coordinate(unsigned int i, Float v) | IMP::core::XYZ | |
| set_coordinates(const algebra::Vector3D ¢er) | IMP::core::RigidBodyMember | |
| set_coordinates_are_optimized(bool tf) const | IMP::core::XYZ | |
| set_internal_coordinates(const algebra::Vector3D &v) const | IMP::core::RigidBodyMember | |
| set_internal_transformation(const algebra::Transformation3D &v) | IMP::core::RigidBodyMember | |
| set_x(Float t) | IMP::core::XYZ | |
| set_y(Float t) | IMP::core::XYZ | |
| set_z(Float t) | IMP::core::XYZ | |
| setup_particle(Model *m, ParticleIndex pi) | IMP::core::XYZ | static |
| setup_particle(IMP::ParticleAdaptor decorator) (defined in IMP::core::XYZ) | IMP::core::XYZ | static |
| setup_particle(Model *m, ParticleIndex pi, algebra::Vector3D v) | IMP::core::XYZ | static |
| setup_particle(IMP::ParticleAdaptor decorator, algebra::Vector3D v) | IMP::core::XYZ | static |
| show(std::ostream &out=std::cout) const (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| Value() (defined in IMP::Value) | IMP::Value | protected |
| XYZ() (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::core::XYZ) | IMP::core::XYZ | |
| XYZ(const IMP::ParticleAdaptor &d) (defined in IMP::core::XYZ) | IMP::core::XYZ | explicit |
| ~NonRigidMember() (defined in IMP::core::NonRigidMember) | IMP::core::NonRigidMember | |
| ~RigidBodyMember() (defined in IMP::core::RigidBodyMember) | IMP::core::RigidBodyMember | |
