DataPointsAssignment.h File Reference

Tools for data points assignment, after anchor point segmentation. More...

#include <IMP/atom/pdb.h>
#include <IMP/atom/Hierarchy.h>
#include <IMP/atom/Atom.h>
#include <IMP/atom/Chain.h>
#include <IMP/core/XYZ.h>
#include <IMP/core/rigid_bodies.h>
#include <IMP/statistics/internal/ClusteringEngine.h>
#include <IMP/statistics/internal/DataPoints.h>
#include <IMP/multifit/DensityDataPoints.h>
#include <IMP/multifit/multifit_config.h>

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Classes
class	IMP::multifit::DataPointsAssignment

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::multifit
	Fitting atomic structures into a cryo-electron microscopy density map.

Typedefs
typedef std::map< IntPair, int >	IMP::multifit::CEdges

Functions
algebra::Vector3D	IMP::multifit::get_segment_maximum (const DataPointsAssignment &dpa, em::DensityMap *dmap, int segment_id)
algebra::Vector3D	IMP::multifit::get_segment_maximum (const DataPointsAssignment &dpa, DensGrid *dmap, int segment_id)
std::pair< algebra::Vector3Ds, CEdges >	IMP::multifit::read_cmm (const std::string &cmm_filename)
void	IMP::multifit::write_chimera (const std::string &chimera_filename, const DataPointsAssignment &dpa)
void	IMP::multifit::write_pdb (const std::string &pdb_filename, const DataPointsAssignment &dpa)
void	IMP::multifit::write_segment_as_mrc (em::DensityMap *dmap, const DataPointsAssignment &dpa, int segment_id, Float resolution, Float apix, const std::string &filename)
void	IMP::multifit::write_segment_as_pdb (const DataPointsAssignment &dpa, int segment_id, const std::string &filename)
void	IMP::multifit::write_segments_as_mrc (em::DensityMap *dmap, const DataPointsAssignment &dpa, Float resolution, Float apix, Float threshold, const std::string &filename)
	Write segments in MRC format. More...
void	IMP::multifit::write_segments_as_pdb (const DataPointsAssignment &dpa, const std::string &filename)

Detailed Description

Tools for data points assignment, after anchor point segmentation.

Copyright 2007-2020 IMP Inventors. All rights reserved.

Definition in file DataPointsAssignment.h.