add_voxel(const VectorD< D > &pt, const VT &vt) (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >::add_voxel(const ExtendedGridIndexD< D > &i, const VT &gi) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
all_begin() const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
all_end() const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
all_indexes_begin() const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
all_indexes_end() const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
AllConstIterator typedef (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
AllIndexes typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
AllIndexIterator typedef (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
apply(const Functor &f) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
apply(const Grid &g, Functor f) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
at(VectorD< D >) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
at(VectorD< D >) (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
at(GridIndexD< D >) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
at(GridIndexD< D >) (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
DefaultEmbeddingD(const VectorD< D > &origin, const VectorD< D > &cell) (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
DefaultEmbeddingD() (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
Embedding typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
extended_indexes_begin(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
extended_indexes_begin(const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
extended_indexes_end(const BoundingBoxD< D > &) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
extended_indexes_end(const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
ExtendedIndex typedef (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
ExtendedIndexes typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
ExtendedIndexIterator typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GeometricPrimitiveD() (defined in IMP::algebra::GeometricPrimitiveD< D >) | IMP::algebra::GeometricPrimitiveD< D > | protected |
get_all_indexes() const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_bounding_box() const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_bounding_box(const ExtendedGridIndexD< D > &ei) const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_bounding_box(const GridIndexD< D > &ei) const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_center(const ExtendedGridIndexD< D > &ei) const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_center(const GridIndexD< D > &ei) const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_dimension() const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_extended_index(const GridIndexD< D > &index) const | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
DefaultEmbeddingD< 3 >::get_extended_index(const VectorD< D > &o) const | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_extended_indexes(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_extended_indexes(const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
get_has_index(const ExtendedGridIndexD< D > &i) const | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >::get_index(const ExtendedGridIndexD< D > &i) const | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
get_index(const VectorD< D > &o) const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_indexes(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_indexes(const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
get_nearest_extended_index(const VectorD< D > &pt) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_nearest_index(const VectorD< D > &pt) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
get_number_of_voxels() const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
get_origin() const (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
get_unit_cell() const | IMP::algebra::DefaultEmbeddingD< 3 > | |
GridD(const Ints counts, const BoundingBoxD< D > &bb, VTdefault_value=VT()) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD(double side, const BoundingBoxD< D > &bb, const VT &default_value=VT()) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD(const VectorD< D > &sides, const BoundingBoxD< D > &bb, const VT &default_value=VT()) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD(const Storage &storage, const Embedding &embed) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD(double side, const VectorD< D > &origin, const VT &default_value=VT()) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD(const VectorD< D > &sides, const VectorD< D > &origin, const VT &default_value=VT()) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
GridD() | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
Index typedef (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
Indexes typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
indexes_begin(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
indexes_begin(const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
indexes_end(const BoundingBoxD< D > &) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
indexes_end(const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
operator[](VectorD< D >) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
operator[](VectorD< D >) (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
operator[](GridIndexD< D >) const (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
operator[](GridIndexD< D >) (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
P typedef (defined in IMP::algebra::SparseUnboundedGrid3D< VT >) | IMP::algebra::SparseUnboundedGrid3D< VT > | |
remove_voxel(const GridIndexD< D > &gi) (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
set_bounding_box(const BoundingBoxD< D > &bb3) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
set_origin(const VectorD< D > &o) (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
set_unit_cell(const VectorD< D > &o) (defined in IMP::algebra::DefaultEmbeddingD< 3 >) | IMP::algebra::DefaultEmbeddingD< 3 > | |
show(std::ostream &out=std::cout) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
SparseGridStorageD(const Ints &counts, const VT &default_value) (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
SparseUnboundedGrid3D(double side, const Vector3D &origin, VT def=VT()) (defined in IMP::algebra::SparseUnboundedGrid3D< VT >) | IMP::algebra::SparseUnboundedGrid3D< VT > | |
SparseUnboundedGrid3D(const Vector3D &sides, const Vector3D &origin, VT def=VT()) (defined in IMP::algebra::SparseUnboundedGrid3D< VT >) | IMP::algebra::SparseUnboundedGrid3D< VT > | |
SparseUnboundedGrid3D() (defined in IMP::algebra::SparseUnboundedGrid3D< VT >) | IMP::algebra::SparseUnboundedGrid3D< VT > | |
Storage typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
UnboundedGridRangeD() (defined in IMP::algebra::UnboundedGridRangeD< 3 >) | IMP::algebra::UnboundedGridRangeD< 3 > | |
Value typedef (defined in IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >) | IMP::algebra::SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > > | |
Vector typedef (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
voxels_begin(const BoundingBoxD< D > &bb) (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
voxels_begin(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
voxels_end(const BoundingBoxD< D > &bb) (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
voxels_end(const BoundingBoxD< D > &bb) const (defined in IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > >) | IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, UnboundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |