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IMP Reference Guide  2.12.0
The Integrative Modeling Platform
EMageFit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2019 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_EMageFit')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_EMageFit')
25  _IMP_EMageFit = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_EMageFit', [dirname(__file__)])
34  except ImportError:
35  import _IMP_EMageFit
36  return _IMP_EMageFit
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_EMageFit', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_EMageFit = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_EMageFit
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_EMAGEFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_EMAGEFIT_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_EMageFit.delete_IMP_EMAGEFIT_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
126  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
132  incr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
133  """
134  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
140  decr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
141  """
142  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
152  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator"""
157  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
162  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
167  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
172  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
177  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
182  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
187  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
192  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
197  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
202  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator
208  __sub__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_EMAGEFIT_SwigPyIterator_swigregister = _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_swigregister
215 IMP_EMAGEFIT_SwigPyIterator_swigregister(IMP_EMAGEFIT_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_EMageFit.IMP_DEBUG
224 IMP_RELEASE = _IMP_EMageFit.IMP_RELEASE
225 IMP_SILENT = _IMP_EMageFit.IMP_SILENT
226 IMP_PROGRESS = _IMP_EMageFit.IMP_PROGRESS
227 IMP_TERSE = _IMP_EMageFit.IMP_TERSE
228 IMP_VERBOSE = _IMP_EMageFit.IMP_VERBOSE
229 IMP_MEMORY = _IMP_EMageFit.IMP_MEMORY
230 IMP_NONE = _IMP_EMageFit.IMP_NONE
231 IMP_USAGE = _IMP_EMageFit.IMP_USAGE
232 IMP_INTERNAL = _IMP_EMageFit.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_EMageFit.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_EMageFit.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_EMageFit.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_EMageFit.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_EMageFit.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_EMageFit.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_EMageFit.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_EMageFit._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_EMageFit._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_EMageFit.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_EMageFit.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_EMageFit.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_EMageFit.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_EMageFit.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_EMageFit.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_EMageFit.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_EMageFit.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_EMageFit.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_EMageFit.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_EMageFit.IMPDISPLAY_SHOW_WARNINGS
316 import IMP.display
317 IMP_GSL_HAS_IMP_CGAL = _IMP_EMageFit.IMP_GSL_HAS_IMP_CGAL
318 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_FILESYSTEM
319 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
320 IMP_GSL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_RANDOM
321 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_SYSTEM
322 IMP_GSL_HAS_CGAL = _IMP_EMageFit.IMP_GSL_HAS_CGAL
323 IMP_GSL_HAS_NUMPY = _IMP_EMageFit.IMP_GSL_HAS_NUMPY
324 IMPGSL_SHOW_WARNINGS = _IMP_EMageFit.IMPGSL_SHOW_WARNINGS
325 import IMP.gsl
326 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
327 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
328 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
329 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
330 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
331 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_CGAL
332 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_HDF5
333 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_NUMPY
334 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_EMageFit.IMPSCOREFUNCTOR_SHOW_WARNINGS
335 import IMP.score_functor
336 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_IMP_CGAL
337 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
338 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
339 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_RANDOM
340 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_SYSTEM
341 IMP_STATISTICS_HAS_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_CGAL
342 IMP_STATISTICS_HAS_NUMPY = _IMP_EMageFit.IMP_STATISTICS_HAS_NUMPY
343 IMPSTATISTICS_SHOW_WARNINGS = _IMP_EMageFit.IMPSTATISTICS_SHOW_WARNINGS
344 import IMP.statistics
345 IMP_CORE_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CORE_HAS_IMP_CGAL
346 IMP_CORE_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CORE_HAS_IMP_KERNEL
347 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_FILESYSTEM
348 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
349 IMP_CORE_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_RANDOM
350 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_SYSTEM
351 IMP_CORE_HAS_CGAL = _IMP_EMageFit.IMP_CORE_HAS_CGAL
352 IMP_CORE_HAS_HDF5 = _IMP_EMageFit.IMP_CORE_HAS_HDF5
353 IMP_CORE_HAS_NUMPY = _IMP_EMageFit.IMP_CORE_HAS_NUMPY
354 IMPCORE_SHOW_WARNINGS = _IMP_EMageFit.IMPCORE_SHOW_WARNINGS
355 import IMP.core
356 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_ALGEBRA
357 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_CGAL
358 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_DISPLAY
359 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_KERNEL
360 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
361 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
362 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
363 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_RANDOM
364 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_SYSTEM
365 IMP_CONTAINER_HAS_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_CGAL
366 IMP_CONTAINER_HAS_HDF5 = _IMP_EMageFit.IMP_CONTAINER_HAS_HDF5
367 IMP_CONTAINER_HAS_NUMPY = _IMP_EMageFit.IMP_CONTAINER_HAS_NUMPY
368 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_CONTAINER_HAS_PYTHON_IHM
369 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
370 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_ROBIN_MAP
371 IMPCONTAINER_SHOW_WARNINGS = _IMP_EMageFit.IMPCONTAINER_SHOW_WARNINGS
372 import IMP.container
373 IMP_ATOM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_CGAL
374 IMP_ATOM_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_KERNEL
375 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
376 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
377 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_RANDOM
378 IMP_ATOM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_REGEX
379 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_SYSTEM
380 IMP_ATOM_HAS_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_CGAL
381 IMP_ATOM_HAS_HDF5 = _IMP_EMageFit.IMP_ATOM_HAS_HDF5
382 IMP_ATOM_HAS_NUMPY = _IMP_EMageFit.IMP_ATOM_HAS_NUMPY
383 IMP_ATOM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_ATOM_HAS_PYTHON_IHM
384 IMPATOM_SHOW_WARNINGS = _IMP_EMageFit.IMPATOM_SHOW_WARNINGS
385 IMP_ATOM_TYPE_INDEX = _IMP_EMageFit.IMP_ATOM_TYPE_INDEX
386 IMP_RESIDUE_TYPE_INDEX = _IMP_EMageFit.IMP_RESIDUE_TYPE_INDEX
387 IMP_HIERARCHY_TYPE_INDEX = _IMP_EMageFit.IMP_HIERARCHY_TYPE_INDEX
388 IMP_CHAIN_TYPE_INDEX = _IMP_EMageFit.IMP_CHAIN_TYPE_INDEX
389 import IMP.atom
390 IMP_EM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM_HAS_IMP_CGAL
391 IMP_EM_HAS_IMP_CONTAINER = _IMP_EMageFit.IMP_EM_HAS_IMP_CONTAINER
392 IMP_EM_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_EM_HAS_IMP_DISPLAY
393 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
394 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_FILESYSTEM
395 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
396 IMP_EM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM_HAS_BOOST_RANDOM
397 IMP_EM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM_HAS_BOOST_REGEX
398 IMP_EM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_SYSTEM
399 IMP_EM_HAS_CGAL = _IMP_EMageFit.IMP_EM_HAS_CGAL
400 IMP_EM_HAS_HDF5 = _IMP_EMageFit.IMP_EM_HAS_HDF5
401 IMP_EM_HAS_NUMPY = _IMP_EMageFit.IMP_EM_HAS_NUMPY
402 IMP_EM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM_HAS_PYTHON_IHM
403 IMPEM_SHOW_WARNINGS = _IMP_EMageFit.IMPEM_SHOW_WARNINGS
404 import IMP.em
405 IMP_RMF_HAS_IMP_CGAL = _IMP_EMageFit.IMP_RMF_HAS_IMP_CGAL
406 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
407 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_FILESYSTEM
408 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
409 IMP_RMF_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_RANDOM
410 IMP_RMF_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_RMF_HAS_BOOST_REGEX
411 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_SYSTEM
412 IMP_RMF_HAS_CGAL = _IMP_EMageFit.IMP_RMF_HAS_CGAL
413 IMP_RMF_HAS_HDF5 = _IMP_EMageFit.IMP_RMF_HAS_HDF5
414 IMP_RMF_HAS_NUMPY = _IMP_EMageFit.IMP_RMF_HAS_NUMPY
415 IMP_RMF_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_RMF_HAS_PYTHON_IHM
416 IMPRMF_SHOW_WARNINGS = _IMP_EMageFit.IMPRMF_SHOW_WARNINGS
417 import IMP.rmf
418 import RMF
419 IMP_DOMINO_HAS_IMP_ATOM = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_ATOM
420 IMP_DOMINO_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_CGAL
421 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_KERNEL
422 IMP_DOMINO_HAS_IMP_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_RMF
423 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
424 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
425 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
426 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_RANDOM
427 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_REGEX
428 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_SYSTEM
429 IMP_DOMINO_HAS_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_CGAL
430 IMP_DOMINO_HAS_HDF5 = _IMP_EMageFit.IMP_DOMINO_HAS_HDF5
431 IMP_DOMINO_HAS_NUMPY = _IMP_EMageFit.IMP_DOMINO_HAS_NUMPY
432 IMP_DOMINO_HAS_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_RMF
433 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_DOMINO_HAS_PYTHON_IHM
434 IMPDOMINO_SHOW_WARNINGS = _IMP_EMageFit.IMPDOMINO_SHOW_WARNINGS
435 import RMF_HDF5
436 import IMP.domino
437 IMP_EM2D_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_CGAL
438 IMP_EM2D_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_KERNEL
439 IMP_EM2D_HAS_IMP_RMF = _IMP_EMageFit.IMP_EM2D_HAS_IMP_RMF
440 IMP_EM2D_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM2D_HAS_IMP_SCORE_FUNCTOR
441 IMP_EM2D_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EM2D_HAS_IMP_STATISTICS
442 IMP_EM2D_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_GRAPH
443 IMP_EM2D_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_RANDOM
444 IMP_EM2D_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_REGEX
445 IMP_EM2D_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_SYSTEM
446 IMP_EM2D_HAS_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_CGAL
447 IMP_EM2D_HAS_GSL = _IMP_EMageFit.IMP_EM2D_HAS_GSL
448 IMP_EM2D_HAS_HDF5 = _IMP_EMageFit.IMP_EM2D_HAS_HDF5
449 IMP_EM2D_HAS_NUMPY = _IMP_EMageFit.IMP_EM2D_HAS_NUMPY
450 IMP_EM2D_HAS_OPENCV22 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV22
451 IMP_EM2D_HAS_RMF = _IMP_EMageFit.IMP_EM2D_HAS_RMF
452 IMP_EM2D_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM2D_HAS_PYTHON_IHM
453 IMP_EM2D_HAS_OPENCV21 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV21
454 IMP_EM2D_HAS_OPENCV3 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV3
455 IMPEM2D_SHOW_WARNINGS = _IMP_EMageFit.IMPEM2D_SHOW_WARNINGS
456 import IMP.em2d
457 IMP_EMAGEFIT_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_CGAL
458 IMP_EMAGEFIT_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_KERNEL
459 IMP_EMAGEFIT_HAS_IMP_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_RMF
460 IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR
461 IMP_EMAGEFIT_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_STATISTICS
462 IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM
463 IMP_EMAGEFIT_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_GRAPH
464 IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS
465 IMP_EMAGEFIT_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_RANDOM
466 IMP_EMAGEFIT_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_REGEX
467 IMP_EMAGEFIT_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_SYSTEM
468 IMP_EMAGEFIT_HAS_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_CGAL
469 IMP_EMAGEFIT_HAS_FFTW3 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_FFTW3
470 IMP_EMAGEFIT_HAS_GSL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_GSL
471 IMP_EMAGEFIT_HAS_HDF5 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_HDF5
472 IMP_EMAGEFIT_HAS_NUMPY = _IMP_EMageFit.IMP_EMAGEFIT_HAS_NUMPY
473 IMP_EMAGEFIT_HAS_OPENCV22 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_OPENCV22
474 IMP_EMAGEFIT_HAS_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_RMF
475 IMP_EMAGEFIT_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_PYTHON_IHM
476 IMPEMAGEFIT_SHOW_WARNINGS = _IMP_EMageFit.IMPEMAGEFIT_SHOW_WARNINGS
477 
478 def get_module_version():
479  """get_module_version() -> std::string const"""
480  return _IMP_EMageFit.get_module_version()
481 
482 def get_example_path(fname):
483  """get_example_path(std::string fname) -> std::string"""
484  return _IMP_EMageFit.get_example_path(fname)
485 
486 def get_data_path(fname):
487  """get_data_path(std::string fname) -> std::string"""
488  return _IMP_EMageFit.get_data_path(fname)
489 
490 from . import _version_check
491 _version_check.check_version(get_module_version())
492 __version__ = get_module_version()
493 
494 
495 
Restraints using electron microscopy 2D images (class averages).
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Several general purpose optimizers from the GNU Scientific Library (GSL).
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Basic utilities for handling cryo-electron microscopy 3D density maps.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.