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IMP Reference Guide  2.11.0
The Integrative Modeling Platform
pepdock/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2019 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_pepdock')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_pepdock')
25  _IMP_pepdock = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_pepdock', [dirname(__file__)])
34  except ImportError:
35  import _IMP_pepdock
36  return _IMP_pepdock
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_pepdock', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_pepdock = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_pepdock
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PEPDOCK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PEPDOCK_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_pepdock.delete_IMP_PEPDOCK_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
126  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
132  incr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
133  """
134  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
140  decr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
141  """
142  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
152  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator"""
157  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
162  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
167  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
172  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
177  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
182  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
187  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
192  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
197  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
202  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator
208  __sub__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_PEPDOCK_SwigPyIterator_swigregister = _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_swigregister
215 IMP_PEPDOCK_SwigPyIterator_swigregister(IMP_PEPDOCK_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_pepdock.IMP_DEBUG
224 IMP_RELEASE = _IMP_pepdock.IMP_RELEASE
225 IMP_SILENT = _IMP_pepdock.IMP_SILENT
226 IMP_PROGRESS = _IMP_pepdock.IMP_PROGRESS
227 IMP_TERSE = _IMP_pepdock.IMP_TERSE
228 IMP_VERBOSE = _IMP_pepdock.IMP_VERBOSE
229 IMP_MEMORY = _IMP_pepdock.IMP_MEMORY
230 IMP_NONE = _IMP_pepdock.IMP_NONE
231 IMP_USAGE = _IMP_pepdock.IMP_USAGE
232 IMP_INTERNAL = _IMP_pepdock.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_pepdock.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_pepdock.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_pepdock._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_pepdock._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_pepdock.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_pepdock.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_pepdock.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_pepdock.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_pepdock.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_pepdock.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_pepdock.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_pepdock.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS
316 import IMP.display
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS
326 import IMP.score_functor
327 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL
328 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
329 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
330 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM
331 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM
332 IMP_STATISTICS_HAS_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_CGAL
333 IMP_STATISTICS_HAS_NUMPY = _IMP_pepdock.IMP_STATISTICS_HAS_NUMPY
334 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS
335 import IMP.statistics
336 IMP_CORE_HAS_IMP_CGAL = _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL
337 IMP_CORE_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL
338 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM
339 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
340 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM
341 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM
342 IMP_CORE_HAS_CGAL = _IMP_pepdock.IMP_CORE_HAS_CGAL
343 IMP_CORE_HAS_HDF5 = _IMP_pepdock.IMP_CORE_HAS_HDF5
344 IMP_CORE_HAS_NUMPY = _IMP_pepdock.IMP_CORE_HAS_NUMPY
345 IMPCORE_SHOW_WARNINGS = _IMP_pepdock.IMPCORE_SHOW_WARNINGS
346 import IMP.core
347 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA
348 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL
349 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY
350 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL
351 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
352 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
353 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
354 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM
355 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM
356 IMP_CONTAINER_HAS_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_CGAL
357 IMP_CONTAINER_HAS_HDF5 = _IMP_pepdock.IMP_CONTAINER_HAS_HDF5
358 IMP_CONTAINER_HAS_NUMPY = _IMP_pepdock.IMP_CONTAINER_HAS_NUMPY
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_pepdock.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_pepdock.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_pepdock.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS
363 import IMP.container
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_pepdock.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_pepdock.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_NUMPY = _IMP_pepdock.IMP_ATOM_HAS_NUMPY
374 IMP_ATOM_HAS_PYTHON_IHM = _IMP_pepdock.IMP_ATOM_HAS_PYTHON_IHM
375 IMPATOM_SHOW_WARNINGS = _IMP_pepdock.IMPATOM_SHOW_WARNINGS
376 IMP_ATOM_TYPE_INDEX = _IMP_pepdock.IMP_ATOM_TYPE_INDEX
377 IMP_RESIDUE_TYPE_INDEX = _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX
378 IMP_HIERARCHY_TYPE_INDEX = _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX
379 IMP_CHAIN_TYPE_INDEX = _IMP_pepdock.IMP_CHAIN_TYPE_INDEX
380 import IMP.atom
381 IMP_RMF_HAS_IMP_CGAL = _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL
382 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
383 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM
384 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
385 IMP_RMF_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM
386 IMP_RMF_HAS_BOOST_REGEX = _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX
387 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM
388 IMP_RMF_HAS_CGAL = _IMP_pepdock.IMP_RMF_HAS_CGAL
389 IMP_RMF_HAS_HDF5 = _IMP_pepdock.IMP_RMF_HAS_HDF5
390 IMP_RMF_HAS_NUMPY = _IMP_pepdock.IMP_RMF_HAS_NUMPY
391 IMP_RMF_HAS_PYTHON_IHM = _IMP_pepdock.IMP_RMF_HAS_PYTHON_IHM
392 IMPRMF_SHOW_WARNINGS = _IMP_pepdock.IMPRMF_SHOW_WARNINGS
393 import IMP.rmf
394 import RMF
395 IMP_DOMINO_HAS_IMP_ATOM = _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM
396 IMP_DOMINO_HAS_IMP_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL
397 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL
398 IMP_DOMINO_HAS_IMP_RMF = _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF
399 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
400 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM
401 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
402 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM
403 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX
404 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM
405 IMP_DOMINO_HAS_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_CGAL
406 IMP_DOMINO_HAS_HDF5 = _IMP_pepdock.IMP_DOMINO_HAS_HDF5
407 IMP_DOMINO_HAS_NUMPY = _IMP_pepdock.IMP_DOMINO_HAS_NUMPY
408 IMP_DOMINO_HAS_RMF = _IMP_pepdock.IMP_DOMINO_HAS_RMF
409 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_pepdock.IMP_DOMINO_HAS_PYTHON_IHM
410 IMPDOMINO_SHOW_WARNINGS = _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS
411 import RMF_HDF5
412 import IMP.domino
413 IMP_PEPDOCK_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA
414 IMP_PEPDOCK_HAS_IMP_ATOM = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM
415 IMP_PEPDOCK_HAS_IMP_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL
416 IMP_PEPDOCK_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY
417 IMP_PEPDOCK_HAS_IMP_KERNEL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL
418 IMP_PEPDOCK_HAS_IMP_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF
419 IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR
420 IMP_PEPDOCK_HAS_IMP_STATISTICS = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS
421 IMP_PEPDOCK_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM
422 IMP_PEPDOCK_HAS_BOOST_GRAPH = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH
423 IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS
424 IMP_PEPDOCK_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM
425 IMP_PEPDOCK_HAS_BOOST_REGEX = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX
426 IMP_PEPDOCK_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM
427 IMP_PEPDOCK_HAS_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL
428 IMP_PEPDOCK_HAS_HDF5 = _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5
429 IMP_PEPDOCK_HAS_NUMPY = _IMP_pepdock.IMP_PEPDOCK_HAS_NUMPY
430 IMP_PEPDOCK_HAS_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_RMF
431 IMP_PEPDOCK_HAS_PYTHON_IHM = _IMP_pepdock.IMP_PEPDOCK_HAS_PYTHON_IHM
432 IMPPEPDOCK_SHOW_WARNINGS = _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS
433 
434 def get_module_version():
435  """get_module_version() -> std::string const"""
436  return _IMP_pepdock.get_module_version()
437 
438 def get_example_path(fname):
439  """get_example_path(std::string fname) -> std::string"""
440  return _IMP_pepdock.get_example_path(fname)
441 
442 def get_data_path(fname):
443  """get_data_path(std::string fname) -> std::string"""
444  return _IMP_pepdock.get_data_path(fname)
445 
446 from . import _version_check
447 _version_check.check_version(get_module_version())
448 __version__ = get_module_version()
449 
450 
451 
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def __init__
Constructor.
Code to compute statistical measures.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.