domino/utility.h File Reference

Functions for helping optimize and understand DOMINO-based sampling. More...

#include <IMP/domino/domino_config.h>
#include "Assignment.h"
#include "Subset.h"
#include "particle_states.h"
#include <IMP/Particle.h>
#include <IMP/SingletonContainer.h>
#include <IMP/RestraintSet.h>
#include <IMP/Model.h>
#include <IMP/container/internal/ClosePairContainer.h>
#include <IMP/display/Writer.h>
#include <IMP/dependency_graph.h>
#include <IMP/statistics/metric_clustering.h>
#include <RMF/HDF5/Group.h>

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Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::domino
	Divide-and-conquer inferential optimization in discrete space.

Functions
double	IMP::domino::get_distance_if_smaller_than (const Subset &s, const Assignment &a, const Assignment &b, ParticleStatesTable *pst, const statistics::Metrics &metrics, double max)
algebra::VectorKD	IMP::domino::get_embedding (const Subset &s, const Assignment &a, ParticleStatesTable *pst)
	Return an embedding for an assignment. More...
Ints	IMP::domino::get_index (const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
Assignment	IMP::domino::get_nearest_assignment (const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst)
	Return the nearest assignment from an embedding. More...
Ints	IMP::domino::get_partial_index (const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
ParticlePairsTemp	IMP::domino::get_possible_interactions (const ParticlesTemp &ps, double max_distance, ParticleStatesTable *pst)

Debug tools
We provide a number of different functions for helping optimize and understand domino-based sampling. These functions expose part of the implementation and are liable to change without notice.
void	IMP::domino::load_particle_states (const Subset &s, const Assignment &ss, const ParticleStatesTable *pst)
	Load the appropriate state for each particle in a Subset. More...
RestraintsTemp	IMP::domino::get_restraints (const Subset &s, const ParticleStatesTable *pst, const DependencyGraph &dg, RestraintSet *rs)

Detailed Description

Functions for helping optimize and understand DOMINO-based sampling.

Copyright 2007-2018 IMP Inventors. All rights reserved.

Definition in file domino/utility.h.