util.h File Reference

utility methods for npctransport More...

#include "npctransport_config.h"
#include <IMP/npctransport/npctransport_proto.fwd.h>
#include <IMP/npctransport/internal/util.h>
#include <IMP/core/Typed.h>
#include <IMP/core/rigid_bodies.h>
#include <IMP/algebra/Vector3D.h>
#include <IMP/algebra/ReferenceFrame3D.h>
#include <IMP/algebra/Transformation3D.h>
#include "typedefs.h"
#include <IMP/base_types.h>
#include <algorithm>
#include <string>

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Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::npctransport

Functions
void	IMP::npctransport::copy_FGs_coordinates (SimulationData const *src_sd, SimulationData *trg_sd)
	copy coordinates of src_sd to trg_sd for FG repeats only More...
void	IMP::npctransport::copy_hierarchy_reference_frame_recursive (Particle *src_p, Particle *trg_p)
void	IMP::npctransport::copy_particle_reference_frame_if_applicable (Particle *src_p, Particle *trg_p)
unsigned int	IMP::npctransport::find_or_add_fg_bead_of_type (::npctransport_proto::Statistics *s, IMP::core::ParticleType pt)
unsigned int	IMP::npctransport::find_or_add_fg_chain_of_type (::npctransport_proto::Statistics *s, IMP::core::ParticleType pt)
unsigned int	IMP::npctransport::find_or_add_floater_of_type (::npctransport_proto::Statistics *s, IMP::core::ParticleType pt)
unsigned int	IMP::npctransport::find_or_add_interaction_of_type (::npctransport_proto::Statistics *s, IMP::npctransport::InteractionType it)
algebra::Vector3D	IMP::npctransport::get_global_from_local_v3 (Particle *p, const algebra::Vector3D &local)
unsigned int	IMP::npctransport::get_maximal_number_of_unordered_pairs (ParticlesTemp const &ps0, ParticlesTemp const &ps1)
template<class t_ordered_set >
boost::tuple< unsigned int, unsigned int >	IMP::npctransport::get_n_lost_and_gained (t_ordered_set old, t_ordered_set cur)
ParticlesTemp	IMP::npctransport::get_non_optimizable_particles (ParticlesTemp const &particles)
ParticlesTemp	IMP::npctransport::get_optimizable_particles (ParticlesTemp const &particles)
ParticleIndexes	IMP::npctransport::get_particle_indexes (ParticlesTemp const &particles)
void	IMP::npctransport::get_protobuf_configuration_from_text (std::string config_txt, std::string config_pb)
algebra::Vector3Ds	IMP::npctransport::get_spheres_centers (algebra::Sphere3Ds const &spheres)
template<typename V3iter >
algebra::Sphere3Ds	IMP::npctransport::get_spheres_from_vectors (V3iter first, V3iter last, double radius)
	convert vectors to spheres of passed radius More...
algebra::Sphere3Ds	IMP::npctransport::get_spheres_from_vectors (algebra::Vector3Ds const &vs, double radius)
	convert vectors to spheres of passed radius More...
template<class t_value >
std::pair< t_value, t_value >	IMP::npctransport::make_unordered_pair (t_value v0, t_value v1)
	Canonize such that v0>=v1 so order doesn't matter. More...

Detailed Description

utility methods for npctransport

*

*Simulate an fg and a kap interacting

#

* Copyright 2007-2018 IMP Inventors. All rights reserved.

Definition in file util.h.