saxs/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.10
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

# This wrapper is part of IMP,
# Copyright 2007-2018 IMP Inventors. All rights reserved.

from __future__ import print_function, division, absolute_import




from sys import version_info as _swig_python_version_info
if _swig_python_version_info >= (2, 7, 0):
    def swig_import_helper():
        import importlib
        pkg = __name__.rpartition('.')[0]
        mname = '.'.join((pkg, '_IMP_saxs')).lstrip('.')
        try:
            return importlib.import_module(mname)
        except ImportError:
            return importlib.import_module('_IMP_saxs')
    _IMP_saxs = swig_import_helper()
    del swig_import_helper
elif _swig_python_version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_saxs', [dirname(__file__)])
        except ImportError:
            import _IMP_saxs
            return _IMP_saxs
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_saxs', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_saxs = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_saxs
del _swig_python_version_info
try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        object.__setattr__(self, name, value)
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr(self, class_type, name):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)


def _swig_setattr_nondynamic_method(set):
    def set_attr(self, name, value):
        if (name == "thisown"):
            return self.this.own(value)
        if hasattr(self, name) or (name == "this"):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add attributes to %s" % self)
    return set_attr


try:
    import weakref
    weakref_proxy = weakref.proxy
except __builtin__.Exception:
    weakref_proxy = lambda x: x


class IMP_SAXS_SwigPyIterator(object):
    """Proxy of C++ swig::IMP_SAXS_SwigPyIterator class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_saxs.delete_IMP_SAXS_SwigPyIterator
    __del__ = lambda self: None

    def value(self):
        """value(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_value(self)


    def incr(self, n=1):
        """
        incr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
        incr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_incr(self, n)


    def decr(self, n=1):
        """
        decr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
        decr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_decr(self, n)


    def distance(self, x):
        """distance(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_distance(self, x)


    def equal(self, x):
        """equal(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_equal(self, x)


    def copy(self):
        """copy(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_copy(self)


    def next(self):
        """next(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_next(self)


    def __next__(self):
        """__next__(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___next__(self)


    def previous(self):
        """previous(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_previous(self)


    def advance(self, n):
        """advance(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_advance(self, n)


    def __eq__(self, x):
        """__eq__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___eq__(self, x)


    def __ne__(self, x):
        """__ne__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___ne__(self, x)


    def __iadd__(self, n):
        """__iadd__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___iadd__(self, n)


    def __isub__(self, n):
        """__isub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___isub__(self, n)


    def __add__(self, n):
        """__add__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___add__(self, n)


    def __sub__(self, *args):
        """
        __sub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator
        __sub__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___sub__(self, *args)

    def __iter__(self):
        return self
IMP_SAXS_SwigPyIterator_swigregister = _IMP_saxs.IMP_SAXS_SwigPyIterator_swigregister
IMP_SAXS_SwigPyIterator_swigregister(IMP_SAXS_SwigPyIterator)


_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_saxs.IMP_DEBUG
IMP_RELEASE = _IMP_saxs.IMP_RELEASE
IMP_SILENT = _IMP_saxs.IMP_SILENT
IMP_PROGRESS = _IMP_saxs.IMP_PROGRESS
IMP_TERSE = _IMP_saxs.IMP_TERSE
IMP_VERBOSE = _IMP_saxs.IMP_VERBOSE
IMP_MEMORY = _IMP_saxs.IMP_MEMORY
IMP_NONE = _IMP_saxs.IMP_NONE
IMP_USAGE = _IMP_saxs.IMP_USAGE
IMP_INTERNAL = _IMP_saxs.IMP_INTERNAL
IMP_KERNEL_HAS_LOG4CXX = _IMP_saxs.IMP_KERNEL_HAS_LOG4CXX
IMP_COMPILER_HAS_AUTO = _IMP_saxs.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_saxs.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_saxs.IMP_COMPILER_HAS_UNIQUE_PTR
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_GPERFTOOLS = _IMP_saxs.IMP_KERNEL_HAS_GPERFTOOLS
IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_saxs.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
IMPKERNEL_SHOW_WARNINGS = _IMP_saxs.IMPKERNEL_SHOW_WARNINGS

import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    """Proxy of C++ std::ostream class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_saxs._ostream_write(self, osa_buf)

_ostream_swigregister = _IMP_saxs._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_saxs.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_saxs.IMP_COMPILER_HAS_FINAL
IMP_HAS_NOEXCEPT = _IMP_saxs.IMP_HAS_NOEXCEPT
IMP_C_OPEN_BINARY = _IMP_saxs.IMP_C_OPEN_BINARY
import IMP
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_SYSTEM
IMPCGAL_SHOW_WARNINGS = _IMP_saxs.IMPCGAL_SHOW_WARNINGS
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_ANN = _IMP_saxs.IMP_ALGEBRA_HAS_ANN
IMPALGEBRA_SHOW_WARNINGS = _IMP_saxs.IMPALGEBRA_SHOW_WARNINGS
import IMP.algebra
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_IMP_CGAL
IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_RANDOM
IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_SYSTEM
IMP_DISPLAY_HAS_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_CGAL
IMPDISPLAY_SHOW_WARNINGS = _IMP_saxs.IMPDISPLAY_SHOW_WARNINGS
import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_CGAL
IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_HDF5
IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_saxs.IMPSCOREFUNCTOR_SHOW_WARNINGS
import IMP.score_functor
IMP_CORE_HAS_IMP_CGAL = _IMP_saxs.IMP_CORE_HAS_IMP_CGAL
IMP_CORE_HAS_IMP_KERNEL = _IMP_saxs.IMP_CORE_HAS_IMP_KERNEL
IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_FILESYSTEM
IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
IMP_CORE_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CORE_HAS_BOOST_RANDOM
IMP_CORE_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_SYSTEM
IMP_CORE_HAS_CGAL = _IMP_saxs.IMP_CORE_HAS_CGAL
IMP_CORE_HAS_HDF5 = _IMP_saxs.IMP_CORE_HAS_HDF5
IMPCORE_SHOW_WARNINGS = _IMP_saxs.IMPCORE_SHOW_WARNINGS
import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_saxs.IMP_CONTAINER_HAS_IMP_ALGEBRA
IMP_CONTAINER_HAS_IMP_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_CGAL
IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_saxs.IMP_CONTAINER_HAS_IMP_DISPLAY
IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_KERNEL
IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_RANDOM
IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_SYSTEM
IMP_CONTAINER_HAS_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_CGAL
IMP_CONTAINER_HAS_HDF5 = _IMP_saxs.IMP_CONTAINER_HAS_HDF5
IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_saxs.IMP_CONTAINER_HAS_PYTHON_IHM
IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_saxs.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_saxs.IMP_CONTAINER_HAS_ROBIN_MAP
IMPCONTAINER_SHOW_WARNINGS = _IMP_saxs.IMPCONTAINER_SHOW_WARNINGS
import IMP.container
IMP_ATOM_HAS_IMP_CGAL = _IMP_saxs.IMP_ATOM_HAS_IMP_CGAL
IMP_ATOM_HAS_IMP_KERNEL = _IMP_saxs.IMP_ATOM_HAS_IMP_KERNEL
IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
IMP_ATOM_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ATOM_HAS_BOOST_RANDOM
IMP_ATOM_HAS_BOOST_REGEX = _IMP_saxs.IMP_ATOM_HAS_BOOST_REGEX
IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ATOM_HAS_BOOST_SYSTEM
IMP_ATOM_HAS_CGAL = _IMP_saxs.IMP_ATOM_HAS_CGAL
IMP_ATOM_HAS_HDF5 = _IMP_saxs.IMP_ATOM_HAS_HDF5
IMP_ATOM_HAS_PYTHON_IHM = _IMP_saxs.IMP_ATOM_HAS_PYTHON_IHM
IMPATOM_SHOW_WARNINGS = _IMP_saxs.IMPATOM_SHOW_WARNINGS
IMP_ATOM_TYPE_INDEX = _IMP_saxs.IMP_ATOM_TYPE_INDEX
IMP_RESIDUE_TYPE_INDEX = _IMP_saxs.IMP_RESIDUE_TYPE_INDEX
IMP_HIERARCHY_TYPE_INDEX = _IMP_saxs.IMP_HIERARCHY_TYPE_INDEX
IMP_CHAIN_TYPE_INDEX = _IMP_saxs.IMP_CHAIN_TYPE_INDEX
import IMP.atom
IMP_SAXS_HAS_IMP_CGAL = _IMP_saxs.IMP_SAXS_HAS_IMP_CGAL
IMP_SAXS_HAS_IMP_CONTAINER = _IMP_saxs.IMP_SAXS_HAS_IMP_CONTAINER
IMP_SAXS_HAS_IMP_DISPLAY = _IMP_saxs.IMP_SAXS_HAS_IMP_DISPLAY
IMP_SAXS_HAS_IMP_KERNEL = _IMP_saxs.IMP_SAXS_HAS_IMP_KERNEL
IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_FILESYSTEM
IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
IMP_SAXS_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SAXS_HAS_BOOST_RANDOM
IMP_SAXS_HAS_BOOST_REGEX = _IMP_saxs.IMP_SAXS_HAS_BOOST_REGEX
IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_SYSTEM
IMP_SAXS_HAS_CGAL = _IMP_saxs.IMP_SAXS_HAS_CGAL
IMP_SAXS_HAS_HDF5 = _IMP_saxs.IMP_SAXS_HAS_HDF5
IMP_SAXS_HAS_PYTHON_IHM = _IMP_saxs.IMP_SAXS_HAS_PYTHON_IHM
IMPSAXS_SHOW_WARNINGS = _IMP_saxs.IMPSAXS_SHOW_WARNINGS
class DistBase(object):
    """Proxy of C++ std::vector<(double)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def iterator(self):
        """iterator(DistBase self) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.DistBase_iterator(self)

    def __iter__(self):
        return self.iterator()

    def __nonzero__(self):
        """__nonzero__(DistBase self) -> bool"""
        return _IMP_saxs.DistBase___nonzero__(self)


    def __bool__(self):
        """__bool__(DistBase self) -> bool"""
        return _IMP_saxs.DistBase___bool__(self)


    def __len__(self):
        """__len__(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase___len__(self)


    def __getslice__(self, i, j):
        """__getslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j) -> DistBase"""
        return _IMP_saxs.DistBase___getslice__(self, i, j)


    def __setslice__(self, *args):
        """
        __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)
        __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j, DistBase v)
        """
        return _IMP_saxs.DistBase___setslice__(self, *args)


    def __delslice__(self, i, j):
        """__delslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)"""
        return _IMP_saxs.DistBase___delslice__(self, i, j)


    def __delitem__(self, *args):
        """
        __delitem__(DistBase self, std::vector< double >::difference_type i)
        __delitem__(DistBase self, PySliceObject * slice)
        """
        return _IMP_saxs.DistBase___delitem__(self, *args)


    def __getitem__(self, *args):
        """
        __getitem__(DistBase self, PySliceObject * slice) -> DistBase
        __getitem__(DistBase self, std::vector< double >::difference_type i) -> std::vector< double >::value_type const &
        """
        return _IMP_saxs.DistBase___getitem__(self, *args)


    def __setitem__(self, *args):
        """
        __setitem__(DistBase self, PySliceObject * slice, DistBase v)
        __setitem__(DistBase self, PySliceObject * slice)
        __setitem__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase___setitem__(self, *args)


    def pop(self):
        """pop(DistBase self) -> std::vector< double >::value_type"""
        return _IMP_saxs.DistBase_pop(self)


    def append(self, x):
        """append(DistBase self, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_append(self, x)


    def empty(self):
        """empty(DistBase self) -> bool"""
        return _IMP_saxs.DistBase_empty(self)


    def size(self):
        """size(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase_size(self)


    def swap(self, v):
        """swap(DistBase self, DistBase v)"""
        return _IMP_saxs.DistBase_swap(self, v)


    def begin(self):
        """begin(DistBase self) -> std::vector< double >::iterator"""
        return _IMP_saxs.DistBase_begin(self)


    def end(self):
        """end(DistBase self) -> std::vector< double >::iterator"""
        return _IMP_saxs.DistBase_end(self)


    def rbegin(self):
        """rbegin(DistBase self) -> std::vector< double >::reverse_iterator"""
        return _IMP_saxs.DistBase_rbegin(self)


    def rend(self):
        """rend(DistBase self) -> std::vector< double >::reverse_iterator"""
        return _IMP_saxs.DistBase_rend(self)


    def clear(self):
        """clear(DistBase self)"""
        return _IMP_saxs.DistBase_clear(self)


    def get_allocator(self):
        """get_allocator(DistBase self) -> std::vector< double >::allocator_type"""
        return _IMP_saxs.DistBase_get_allocator(self)


    def pop_back(self):
        """pop_back(DistBase self)"""
        return _IMP_saxs.DistBase_pop_back(self)


    def erase(self, *args):
        """
        erase(DistBase self, std::vector< double >::iterator pos) -> std::vector< double >::iterator
        erase(DistBase self, std::vector< double >::iterator first, std::vector< double >::iterator last) -> std::vector< double >::iterator
        """
        return _IMP_saxs.DistBase_erase(self, *args)


    def __init__(self, *args):
        """
        __init__(std::vector<(double)> self) -> DistBase
        __init__(std::vector<(double)> self, DistBase arg2) -> DistBase
        __init__(std::vector<(double)> self, std::vector< double >::size_type size) -> DistBase
        __init__(std::vector<(double)> self, std::vector< double >::size_type size, std::vector< double >::value_type const & value) -> DistBase
        """
        this = _IMP_saxs.new_DistBase(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def push_back(self, x):
        """push_back(DistBase self, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_push_back(self, x)


    def front(self):
        """front(DistBase self) -> std::vector< double >::value_type const &"""
        return _IMP_saxs.DistBase_front(self)


    def back(self):
        """back(DistBase self) -> std::vector< double >::value_type const &"""
        return _IMP_saxs.DistBase_back(self)


    def assign(self, n, x):
        """assign(DistBase self, std::vector< double >::size_type n, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_assign(self, n, x)


    def resize(self, *args):
        """
        resize(DistBase self, std::vector< double >::size_type new_size)
        resize(DistBase self, std::vector< double >::size_type new_size, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase_resize(self, *args)


    def insert(self, *args):
        """
        insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::value_type const & x) -> std::vector< double >::iterator
        insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::size_type n, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase_insert(self, *args)


    def reserve(self, n):
        """reserve(DistBase self, std::vector< double >::size_type n)"""
        return _IMP_saxs.DistBase_reserve(self, n)


    def capacity(self):
        """capacity(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase_capacity(self)

    __swig_destroy__ = _IMP_saxs.delete_DistBase
    __del__ = lambda self: None
DistBase_swigregister = _IMP_saxs.DistBase_swigregister
DistBase_swigregister(DistBase)


_object_types.append("Profile")


def _object_cast_to_Profile(o):
    """_object_cast_to_Profile(Object o) -> Profile"""
    return _IMP_saxs._object_cast_to_Profile(o)

_object_types.append("ChiScore")


def _object_cast_to_ChiScore(o):
    """_object_cast_to_ChiScore(Object o) -> ChiScore"""
    return _IMP_saxs._object_cast_to_ChiScore(o)

_object_types.append("ChiScoreLog")


def _object_cast_to_ChiScoreLog(o):
    """_object_cast_to_ChiScoreLog(Object o) -> ChiScoreLog"""
    return _IMP_saxs._object_cast_to_ChiScoreLog(o)
ALL_ATOMS = _IMP_saxs.ALL_ATOMS
HEAVY_ATOMS = _IMP_saxs.HEAVY_ATOMS
CA_ATOMS = _IMP_saxs.CA_ATOMS
RESIDUES = _IMP_saxs.RESIDUES
class FormFactorTable(object):
    """Proxy of C++ IMP::saxs::FormFactorTable class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::FormFactorTable self) -> FormFactorTable
        __init__(IMP::saxs::FormFactorTable self, std::string const & table_name, double min_q, double max_q, double delta_q) -> FormFactorTable
        """
        this = _IMP_saxs.new_FormFactorTable(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_form_factor(self, *args):
        """
        get_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
        get_form_factor(FormFactorTable self, Particle p) -> double
        """
        return _IMP_saxs.FormFactorTable_get_form_factor(self, *args)


    def get_vacuum_form_factor(self, *args):
        """
        get_vacuum_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
        get_vacuum_form_factor(FormFactorTable self, Particle p) -> double
        """
        return _IMP_saxs.FormFactorTable_get_vacuum_form_factor(self, *args)


    def get_dummy_form_factor(self, *args):
        """
        get_dummy_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
        get_dummy_form_factor(FormFactorTable self, Particle p) -> double
        """
        return _IMP_saxs.FormFactorTable_get_dummy_form_factor(self, *args)


    def get_water_form_factor(self):
        """get_water_form_factor(FormFactorTable self) -> double"""
        return _IMP_saxs.FormFactorTable_get_water_form_factor(self)


    def get_vacuum_water_form_factor(self):
        """get_vacuum_water_form_factor(FormFactorTable self) -> double"""
        return _IMP_saxs.FormFactorTable_get_vacuum_water_form_factor(self)


    def get_dummy_water_form_factor(self):
        """get_dummy_water_form_factor(FormFactorTable self) -> double"""
        return _IMP_saxs.FormFactorTable_get_dummy_water_form_factor(self)


    def get_form_factors(self, *args):
        """
        get_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
        get_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
        """
        return _IMP_saxs.FormFactorTable_get_form_factors(self, *args)


    def get_vacuum_form_factors(self, *args):
        """
        get_vacuum_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
        get_vacuum_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
        """
        return _IMP_saxs.FormFactorTable_get_vacuum_form_factors(self, *args)


    def get_dummy_form_factors(self, *args):
        """
        get_dummy_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> IMP::Vector< double > const
        get_dummy_form_factors(FormFactorTable self, Particle p) -> IMP::Vector< double > const &
        """
        return _IMP_saxs.FormFactorTable_get_dummy_form_factors(self, *args)


    def get_water_form_factors(self):
        """get_water_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
        return _IMP_saxs.FormFactorTable_get_water_form_factors(self)


    def get_water_vacuum_form_factors(self):
        """get_water_vacuum_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
        return _IMP_saxs.FormFactorTable_get_water_vacuum_form_factors(self)


    def get_water_dummy_form_factors(self):
        """get_water_dummy_form_factors(FormFactorTable self) -> IMP::Vector< double > const &"""
        return _IMP_saxs.FormFactorTable_get_water_dummy_form_factors(self)


    def get_radius(self, *args):
        """
        get_radius(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
        get_radius(FormFactorTable self, Particle p) -> double
        """
        return _IMP_saxs.FormFactorTable_get_radius(self, *args)


    def get_volume(self, *args):
        """
        get_volume(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type) -> double
        get_volume(FormFactorTable self, Particle p) -> double
        """
        return _IMP_saxs.FormFactorTable_get_volume(self, *args)


    def show(self, *args):
        """
        show(FormFactorTable self, _ostream out, std::string prefix)
        show(FormFactorTable self, _ostream out)
        show(FormFactorTable self)
        """
        return _IMP_saxs.FormFactorTable_show(self, *args)

    rho_ = _swig_property(_IMP_saxs.FormFactorTable_rho__get, _IMP_saxs.FormFactorTable_rho__set)
    __swig_destroy__ = _IMP_saxs.delete_FormFactorTable
    __del__ = lambda self: None
FormFactorTable_swigregister = _IMP_saxs.FormFactorTable_swigregister
FormFactorTable_swigregister(FormFactorTable)
cvar = _IMP_saxs.cvar


def get_default_form_factor_table():
    """get_default_form_factor_table() -> FormFactorTable"""
    return _IMP_saxs.get_default_form_factor_table()
class Profile(IMP.Object):
    """Proxy of C++ IMP::saxs::Profile class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args):
        """
        __init__(IMP::saxs::Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0, int units=1) -> Profile
        __init__(IMP::saxs::Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0) -> Profile
        __init__(IMP::saxs::Profile self, std::string const & file_name, bool fit_file=False) -> Profile
        __init__(IMP::saxs::Profile self, std::string const & file_name) -> Profile
        __init__(IMP::saxs::Profile self, double qmin=0.0, double qmax=0.5, double delta=0.005) -> Profile
        __init__(IMP::saxs::Profile self, double qmin=0.0, double qmax=0.5) -> Profile
        __init__(IMP::saxs::Profile self, double qmin=0.0) -> Profile
        __init__(IMP::saxs::Profile self) -> Profile
        """
        this = _IMP_saxs.new_Profile(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def calculate_profile_partial(self, *args):
        """
        calculate_profile_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface, IMP::saxs::FormFactorType ff_type)
        calculate_profile_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface)
        calculate_profile_partial(Profile self, IMP::Particles const & particles)
        calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1, IMP::Vector< double > const & surface2, IMP::saxs::FormFactorType ff_type)
        calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1, IMP::Vector< double > const & surface2)
        calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::Vector< double > const & surface1)
        calculate_profile_partial(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2)
        """
        return _IMP_saxs.Profile_calculate_profile_partial(self, *args)


    def calculate_profile_reciprocal_partial(self, *args):
        """
        calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface, IMP::saxs::FormFactorType ff_type)
        calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles, IMP::Vector< double > const & surface)
        calculate_profile_reciprocal_partial(Profile self, IMP::Particles const & particles)
        """
        return _IMP_saxs.Profile_calculate_profile_reciprocal_partial(self, *args)


    def calculate_profile(self, *args):
        """
        calculate_profile(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type, bool reciprocal=False)
        calculate_profile(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type)
        calculate_profile(Profile self, IMP::Particles const & particles)
        calculate_profile(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2, IMP::saxs::FormFactorType ff_type)
        calculate_profile(Profile self, IMP::Particles const & particles1, IMP::Particles const & particles2)
        """
        return _IMP_saxs.Profile_calculate_profile(self, *args)


    def calculate_I0(self, *args):
        """
        calculate_I0(Profile self, IMP::Particles const & particles, IMP::saxs::FormFactorType ff_type) -> double
        calculate_I0(Profile self, IMP::Particles const & particles) -> double
        """
        return _IMP_saxs.Profile_calculate_I0(self, *args)


    def calculate_profile_constant_form_factor(self, particles, form_factor=1.0):
        """
        calculate_profile_constant_form_factor(Profile self, IMP::Particles const & particles, double form_factor=1.0)
        calculate_profile_constant_form_factor(Profile self, IMP::Particles const & particles)
        """
        return _IMP_saxs.Profile_calculate_profile_constant_form_factor(self, particles, form_factor)


    def calculate_profile_symmetric(self, *args):
        """
        calculate_profile_symmetric(Profile self, IMP::Particles const & particles, unsigned int n, IMP::saxs::FormFactorType ff_type)
        calculate_profile_symmetric(Profile self, IMP::Particles const & particles, unsigned int n)
        """
        return _IMP_saxs.Profile_calculate_profile_symmetric(self, *args)


    def profile_2_distribution(self, rd, max_distance):
        """profile_2_distribution(Profile self, RadialDistributionFunction rd, double max_distance)"""
        return _IMP_saxs.Profile_profile_2_distribution(self, rd, max_distance)


    def distribution_2_profile(self, r_dist):
        """distribution_2_profile(Profile self, RadialDistributionFunction r_dist)"""
        return _IMP_saxs.Profile_distribution_2_profile(self, r_dist)


    def resample(self, exp_profile, resampled_profile):
        """resample(Profile self, Profile exp_profile, Profile resampled_profile)"""
        return _IMP_saxs.Profile_resample(self, exp_profile, resampled_profile)


    def downsample(self, downsampled_profile, point_number):
        """downsample(Profile self, Profile downsampled_profile, unsigned int point_number)"""
        return _IMP_saxs.Profile_downsample(self, downsampled_profile, point_number)


    def radius_of_gyration(self, end_q_rg=1.3):
        """
        radius_of_gyration(Profile self, double end_q_rg=1.3) -> double
        radius_of_gyration(Profile self) -> double
        """
        return _IMP_saxs.Profile_radius_of_gyration(self, end_q_rg)


    def mean_intensity(self):
        """mean_intensity(Profile self) -> double"""
        return _IMP_saxs.Profile_mean_intensity(self)


    def read_SAXS_file(self, file_name, fit_file=False, max_q=0.0, units=1):
        """
        read_SAXS_file(Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0, int units=1)
        read_SAXS_file(Profile self, std::string const & file_name, bool fit_file=False, double max_q=0.0)
        read_SAXS_file(Profile self, std::string const & file_name, bool fit_file=False)
        read_SAXS_file(Profile self, std::string const & file_name)
        """
        return _IMP_saxs.Profile_read_SAXS_file(self, file_name, fit_file, max_q, units)


    def write_SAXS_file(self, file_name, max_q=0.0):
        """
        write_SAXS_file(Profile self, std::string const & file_name, double max_q=0.0)
        write_SAXS_file(Profile self, std::string const & file_name)
        """
        return _IMP_saxs.Profile_write_SAXS_file(self, file_name, max_q)


    def read_partial_profiles(self, file_name):
        """read_partial_profiles(Profile self, std::string const & file_name)"""
        return _IMP_saxs.Profile_read_partial_profiles(self, file_name)


    def write_partial_profiles(self, file_name):
        """write_partial_profiles(Profile self, std::string const & file_name)"""
        return _IMP_saxs.Profile_write_partial_profiles(self, file_name)


    def get_delta_q(self):
        """get_delta_q(Profile self) -> double"""
        return _IMP_saxs.Profile_get_delta_q(self)


    def get_min_q(self):
        """get_min_q(Profile self) -> double"""
        return _IMP_saxs.Profile_get_min_q(self)


    def get_max_q(self):
        """get_max_q(Profile self) -> double"""
        return _IMP_saxs.Profile_get_max_q(self)


    def get_intensity(self, i):
        """get_intensity(Profile self, unsigned int i) -> double"""
        return _IMP_saxs.Profile_get_intensity(self, i)


    def get_q(self, i):
        """get_q(Profile self, unsigned int i) -> double"""
        return _IMP_saxs.Profile_get_q(self, i)


    def get_error(self, i):
        """get_error(Profile self, unsigned int i) -> double"""
        return _IMP_saxs.Profile_get_error(self, i)


    def get_weight(self, i):
        """get_weight(Profile self, unsigned int i) -> double"""
        return _IMP_saxs.Profile_get_weight(self, i)


    def get_qs(self):
        """get_qs(Profile self) -> Eigen::VectorXf const &"""
        return _IMP_saxs.Profile_get_qs(self)


    def get_intensities(self):
        """get_intensities(Profile self) -> Eigen::VectorXf const &"""
        return _IMP_saxs.Profile_get_intensities(self)


    def get_errors(self):
        """get_errors(Profile self) -> Eigen::VectorXf const &"""
        return _IMP_saxs.Profile_get_errors(self)


    def get_average_radius(self):
        """get_average_radius(Profile self) -> double"""
        return _IMP_saxs.Profile_get_average_radius(self)


    def size(self):
        """size(Profile self) -> unsigned int"""
        return _IMP_saxs.Profile_size(self)


    def is_uniform_sampling(self):
        """is_uniform_sampling(Profile self) -> bool"""
        return _IMP_saxs.Profile_is_uniform_sampling(self)


    def is_partial_profile(self):
        """is_partial_profile(Profile self) -> bool"""
        return _IMP_saxs.Profile_is_partial_profile(self)


    def get_name(self):
        """get_name(Profile self) -> std::string"""
        return _IMP_saxs.Profile_get_name(self)


    def get_id(self):
        """get_id(Profile self) -> unsigned int"""
        return _IMP_saxs.Profile_get_id(self)


    def set_qs(self, q):
        """set_qs(Profile self, Eigen::VectorXf const & q)"""
        return _IMP_saxs.Profile_set_qs(self, q)


    def set_intensities(self, i):
        """set_intensities(Profile self, Eigen::VectorXf const & i)"""
        return _IMP_saxs.Profile_set_intensities(self, i)


    def set_errors(self, e):
        """set_errors(Profile self, Eigen::VectorXf const & e)"""
        return _IMP_saxs.Profile_set_errors(self, e)


    def set_intensity(self, i, iq):
        """set_intensity(Profile self, unsigned int i, double iq)"""
        return _IMP_saxs.Profile_set_intensity(self, i, iq)


    def set_ff_table(self, ff_table):
        """set_ff_table(Profile self, FormFactorTable ff_table)"""
        return _IMP_saxs.Profile_set_ff_table(self, ff_table)


    def set_average_radius(self, r):
        """set_average_radius(Profile self, double r)"""
        return _IMP_saxs.Profile_set_average_radius(self, r)


    def set_average_volume(self, v):
        """set_average_volume(Profile self, double v)"""
        return _IMP_saxs.Profile_set_average_volume(self, v)


    def set_name(self, name):
        """set_name(Profile self, std::string name)"""
        return _IMP_saxs.Profile_set_name(self, name)


    def set_id(self, id):
        """set_id(Profile self, unsigned int id)"""
        return _IMP_saxs.Profile_set_id(self, id)


    def set_beam_profile(self, beam_profile_file):
        """set_beam_profile(Profile self, std::string beam_profile_file)"""
        return _IMP_saxs.Profile_set_beam_profile(self, beam_profile_file)


    def add_errors(self):
        """add_errors(Profile self)"""
        return _IMP_saxs.Profile_add_errors(self)


    def add_noise(self, percentage=0.03):
        """
        add_noise(Profile self, double percentage=0.03)
        add_noise(Profile self)
        """
        return _IMP_saxs.Profile_add_noise(self, percentage)


    def sum_partial_profiles(self, c1, c2, check_cashed=True):
        """
        sum_partial_profiles(Profile self, double c1, double c2, bool check_cashed=True)
        sum_partial_profiles(Profile self, double c1, double c2)
        """
        return _IMP_saxs.Profile_sum_partial_profiles(self, c1, c2, check_cashed)


    def add(self, *args):
        """
        add(Profile self, Profile other_profile, double weight=1.0)
        add(Profile self, Profile other_profile)
        add(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles, IMP::Vector< double > const & weights)
        add(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles)
        """
        return _IMP_saxs.Profile_add(self, *args)


    def add_partial_profiles(self, *args):
        """
        add_partial_profiles(Profile self, Profile other_profile, double weight=1.0)
        add_partial_profiles(Profile self, Profile other_profile)
        add_partial_profiles(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles, IMP::Vector< double > const & weights)
        add_partial_profiles(Profile self, IMP::Vector< IMP::saxs::Profile * > const & profiles)
        """
        return _IMP_saxs.Profile_add_partial_profiles(self, *args)


    def background_adjust(self, start_q):
        """background_adjust(Profile self, double start_q)"""
        return _IMP_saxs.Profile_background_adjust(self, start_q)


    def scale(self, c):
        """scale(Profile self, double c)"""
        return _IMP_saxs.Profile_scale(self, c)


    def offset(self, c):
        """offset(Profile self, double c)"""
        return _IMP_saxs.Profile_offset(self, c)


    def copy_errors(self, exp_profile):
        """copy_errors(Profile self, Profile exp_profile)"""
        return _IMP_saxs.Profile_copy_errors(self, exp_profile)


    def get_version_info(self):
        """get_version_info(Profile self) -> VersionInfo"""
        return _IMP_saxs.Profile_get_version_info(self)


    def __str__(self):
        """__str__(Profile self) -> std::string"""
        return _IMP_saxs.Profile___str__(self)


    def __repr__(self):
        """__repr__(Profile self) -> std::string"""
        return _IMP_saxs.Profile___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_Profile(o)

Profile_swigregister = _IMP_saxs.Profile_swigregister
Profile_swigregister(Profile)
Profile.modulation_function_parameter_ = _IMP_saxs.cvar.Profile_modulation_function_parameter_

class FitParameters(object):
    """Proxy of C++ IMP::saxs::FitParameters class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::FitParameters self) -> FitParameters
        __init__(IMP::saxs::FitParameters self, double chi_square, double c1, double c2, double c, double o) -> FitParameters
        __init__(IMP::saxs::FitParameters self, double chi_square, double c1, double c2) -> FitParameters
        """
        this = _IMP_saxs.new_FitParameters(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_score(self):
        """get_score(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_score(self)


    def get_chi_square(self):
        """get_chi_square(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_chi_square(self)


    def get_c1(self):
        """get_c1(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_c1(self)


    def get_c2(self):
        """get_c2(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_c2(self)


    def get_scale(self):
        """get_scale(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_scale(self)


    def get_offset(self):
        """get_offset(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_offset(self)


    def get_default_chi_square(self):
        """get_default_chi_square(FitParameters self) -> double"""
        return _IMP_saxs.FitParameters_get_default_chi_square(self)


    def get_pdb_file_name(self):
        """get_pdb_file_name(FitParameters self) -> std::string"""
        return _IMP_saxs.FitParameters_get_pdb_file_name(self)


    def get_profile_file_name(self):
        """get_profile_file_name(FitParameters self) -> std::string"""
        return _IMP_saxs.FitParameters_get_profile_file_name(self)


    def get_mol_index(self):
        """get_mol_index(FitParameters self) -> int"""
        return _IMP_saxs.FitParameters_get_mol_index(self)


    def set_score(self, score):
        """set_score(FitParameters self, double score)"""
        return _IMP_saxs.FitParameters_set_score(self, score)


    def set_chi_square(self, chi_square):
        """set_chi_square(FitParameters self, double chi_square)"""
        return _IMP_saxs.FitParameters_set_chi_square(self, chi_square)


    def set_default_chi_square(self, chi_square):
        """set_default_chi_square(FitParameters self, double chi_square)"""
        return _IMP_saxs.FitParameters_set_default_chi_square(self, chi_square)


    def set_profile_file_name(self, file_name):
        """set_profile_file_name(FitParameters self, std::string file_name)"""
        return _IMP_saxs.FitParameters_set_profile_file_name(self, file_name)


    def set_pdb_file_name(self, file_name):
        """set_pdb_file_name(FitParameters self, std::string file_name)"""
        return _IMP_saxs.FitParameters_set_pdb_file_name(self, file_name)


    def set_mol_index(self, index):
        """set_mol_index(FitParameters self, int index)"""
        return _IMP_saxs.FitParameters_set_mol_index(self, index)


    def show(self, s):
        """show(FitParameters self, _ostream s)"""
        return _IMP_saxs.FitParameters_show(self, s)

    __swig_destroy__ = _IMP_saxs.delete_FitParameters
    __del__ = lambda self: None
FitParameters_swigregister = _IMP_saxs.FitParameters_swigregister
FitParameters_swigregister(FitParameters)

class WeightedFitParameters(FitParameters):
    """Proxy of C++ IMP::saxs::WeightedFitParameters class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::WeightedFitParameters self) -> WeightedFitParameters
        __init__(IMP::saxs::WeightedFitParameters self, double chi_square, double c1, double c2, IMP::Vector< double > const & weights) -> WeightedFitParameters
        """
        this = _IMP_saxs.new_WeightedFitParameters(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_weights(self):
        """get_weights(WeightedFitParameters self) -> IMP::Vector< double > const &"""
        return _IMP_saxs.WeightedFitParameters_get_weights(self)


    def set_weights(self, weights):
        """set_weights(WeightedFitParameters self, IMP::Vector< double > const & weights)"""
        return _IMP_saxs.WeightedFitParameters_set_weights(self, weights)


    def show(self, s):
        """show(WeightedFitParameters self, _ostream s)"""
        return _IMP_saxs.WeightedFitParameters_show(self, s)

    __swig_destroy__ = _IMP_saxs.delete_WeightedFitParameters
    __del__ = lambda self: None
WeightedFitParameters_swigregister = _IMP_saxs.WeightedFitParameters_swigregister
WeightedFitParameters_swigregister(WeightedFitParameters)

class ChiScore(IMP.Object):
    """Proxy of C++ IMP::saxs::ChiScore class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::saxs::ChiScore self) -> ChiScore"""
        this = _IMP_saxs.new_ChiScore()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, exp_profile, model_profile, use_offset=False):
        """
        compute_score(ChiScore self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> double
        compute_score(ChiScore self, Profile exp_profile, Profile model_profile) -> double
        """
        return _IMP_saxs.ChiScore_compute_score(self, exp_profile, model_profile, use_offset)


    def compute_scale_factor(self, exp_profile, model_profile, offset=0.0):
        """
        compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile, double offset=0.0) -> double
        compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile) -> double
        """
        return _IMP_saxs.ChiScore_compute_scale_factor(self, exp_profile, model_profile, offset)


    def compute_offset(self, exp_profile, model_profile):
        """compute_offset(ChiScore self, Profile exp_profile, Profile model_profile) -> double"""
        return _IMP_saxs.ChiScore_compute_offset(self, exp_profile, model_profile)


    def get_version_info(self):
        """get_version_info(ChiScore self) -> VersionInfo"""
        return _IMP_saxs.ChiScore_get_version_info(self)


    def __str__(self):
        """__str__(ChiScore self) -> std::string"""
        return _IMP_saxs.ChiScore___str__(self)


    def __repr__(self):
        """__repr__(ChiScore self) -> std::string"""
        return _IMP_saxs.ChiScore___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_ChiScore(o)

ChiScore_swigregister = _IMP_saxs.ChiScore_swigregister
ChiScore_swigregister(ChiScore)

class ChiScoreLog(IMP.Object):
    """Proxy of C++ IMP::saxs::ChiScoreLog class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::saxs::ChiScoreLog self) -> ChiScoreLog"""
        this = _IMP_saxs.new_ChiScoreLog()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, *args):
        """
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> double
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, double min_q, double max_q) -> double
        """
        return _IMP_saxs.ChiScoreLog_compute_score(self, *args)


    def compute_scale_factor(self, exp_profile, model_profile, offset=0.0):
        """
        compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile, double offset=0.0) -> double
        compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double
        """
        return _IMP_saxs.ChiScoreLog_compute_scale_factor(self, exp_profile, model_profile, offset)


    def compute_offset(self, exp_profile, model_profile):
        """compute_offset(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> double"""
        return _IMP_saxs.ChiScoreLog_compute_offset(self, exp_profile, model_profile)


    def get_version_info(self):
        """get_version_info(ChiScoreLog self) -> VersionInfo"""
        return _IMP_saxs.ChiScoreLog_get_version_info(self)


    def __str__(self):
        """__str__(ChiScoreLog self) -> std::string"""
        return _IMP_saxs.ChiScoreLog___str__(self)


    def __repr__(self):
        """__repr__(ChiScoreLog self) -> std::string"""
        return _IMP_saxs.ChiScoreLog___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_ChiScoreLog(o)

ChiScoreLog_swigregister = _IMP_saxs.ChiScoreLog_swigregister
ChiScoreLog_swigregister(ChiScoreLog)

class ProfileFitterChi(IMP.Object):
    """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile) -> ProfileFitterChi
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile, ChiScore sf) -> ProfileFitterChi
        """
        this = _IMP_saxs.new_ProfileFitterChi(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, *args):
        """
        compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
        compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False) -> double
        compute_score(ProfileFitterChi self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterChi_compute_score(self, *args)


    def fit_profile(self, *args):
        """
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, double min_c1=0.95) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile) -> FitParameters
        """
        return _IMP_saxs.ProfileFitterChi_fit_profile(self, *args)


    def compute_scale_factor(self, model_profile, offset=0.0):
        """
        compute_scale_factor(ProfileFitterChi self, Profile model_profile, double offset=0.0) -> double
        compute_scale_factor(ProfileFitterChi self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterChi_compute_scale_factor(self, model_profile, offset)


    def compute_offset(self, model_profile):
        """compute_offset(ProfileFitterChi self, Profile model_profile) -> double"""
        return _IMP_saxs.ProfileFitterChi_compute_offset(self, model_profile)


    def resample(self, model_profile, resampled_profile):
        """resample(ProfileFitterChi self, Profile model_profile, Profile resampled_profile)"""
        return _IMP_saxs.ProfileFitterChi_resample(self, model_profile, resampled_profile)


    def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
        """
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, double const chi_square)
        """
        return _IMP_saxs.ProfileFitterChi_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)

    __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChi
    __del__ = lambda self: None
ProfileFitterChi_swigregister = _IMP_saxs.ProfileFitterChi_swigregister
ProfileFitterChi_swigregister(ProfileFitterChi)

class WeightedProfileFitterChi(ProfileFitterChi):
    """Proxy of C++ IMP::saxs::WeightedProfileFitter<(IMP::saxs::ChiScore)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, exp_profile):
        """__init__(IMP::saxs::WeightedProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile) -> WeightedProfileFitterChi"""
        this = _IMP_saxs.new_WeightedProfileFitterChi(exp_profile)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, profiles, weights, use_offset=False, NNLS=True):
        """
        compute_score(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp const & profiles, IMP::Vector< double > & weights, bool use_offset=False, bool NNLS=True) -> double
        compute_score(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp const & profiles, IMP::Vector< double > & weights, bool use_offset=False) -> double
        compute_score(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp const & profiles, IMP::Vector< double > & weights) -> double
        """
        return _IMP_saxs.WeightedProfileFitterChi_compute_score(self, profiles, weights, use_offset, NNLS)


    def fit_profile(self, partial_profiles, min_c1=0.95, max_c1=1.05, min_c2=-2.0, max_c2=4.0, use_offset=False):
        """
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> WeightedFitParameters
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> WeightedFitParameters
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> WeightedFitParameters
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05) -> WeightedFitParameters
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, double min_c1=0.95) -> WeightedFitParameters
        fit_profile(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles) -> WeightedFitParameters
        """
        return _IMP_saxs.WeightedProfileFitterChi_fit_profile(self, partial_profiles, min_c1, max_c1, min_c2, max_c2, use_offset)


    def write_fit_file(self, partial_profiles, fp, fit_file_name, use_offset=False):
        """
        write_fit_file(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, WeightedFitParameters fp, std::string const fit_file_name, bool use_offset=False)
        write_fit_file(WeightedProfileFitterChi self, IMP::saxs::ProfilesTemp partial_profiles, WeightedFitParameters fp, std::string const fit_file_name)
        """
        return _IMP_saxs.WeightedProfileFitterChi_write_fit_file(self, partial_profiles, fp, fit_file_name, use_offset)

    __swig_destroy__ = _IMP_saxs.delete_WeightedProfileFitterChi
    __del__ = lambda self: None
WeightedProfileFitterChi_swigregister = _IMP_saxs.WeightedProfileFitterChi_swigregister
WeightedProfileFitterChi_swigregister(WeightedProfileFitterChi)

class Restraint(IMP.Restraint):
    """Proxy of C++ IMP::saxs::Restraint class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::Restraint self, IMP::Particles const & particles, Profile exp_profile, IMP::saxs::FormFactorType ff_type) -> Restraint
        __init__(IMP::saxs::Restraint self, IMP::Particles const & particles, Profile exp_profile) -> Restraint
        """
        this = _IMP_saxs.new_Restraint(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

        if self.__class__ != Restraint:
            _director_objects.register(self)




    def do_get_inputs(self):
        """do_get_inputs(Restraint self) -> IMP::ModelObjectsTemp"""
        return _IMP_saxs.Restraint_do_get_inputs(self)


    def get_version_info(self):
        """get_version_info(Restraint self) -> VersionInfo"""
        return _IMP_saxs.Restraint_get_version_info(self)

Restraint_swigregister = _IMP_saxs.Restraint_swigregister
Restraint_swigregister(Restraint)

class RadiusOfGyrationRestraint(Restraint):
    """Proxy of C++ IMP::saxs::RadiusOfGyrationRestraint class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, particles, exp_profile, end_q_rg=1.3):
        """
        __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::Particles const & particles, Profile exp_profile, double const end_q_rg=1.3) -> RadiusOfGyrationRestraint
        __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::Particles const & particles, Profile exp_profile) -> RadiusOfGyrationRestraint
        """
        this = _IMP_saxs.new_RadiusOfGyrationRestraint(particles, exp_profile, end_q_rg)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this
RadiusOfGyrationRestraint_swigregister = _IMP_saxs.RadiusOfGyrationRestraint_swigregister
RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)

class FloatDistribution(DistBase):
    """Proxy of C++ IMP::saxs::Distribution<(double)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::Distribution<(double)> self, double bin_size) -> FloatDistribution
        __init__(IMP::saxs::Distribution<(double)> self) -> FloatDistribution
        """
        this = _IMP_saxs.new_FloatDistribution(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_max_distance(self):
        """get_max_distance(FloatDistribution self) -> double"""
        return _IMP_saxs.FloatDistribution_get_max_distance(self)


    def get_bin_size(self):
        """get_bin_size(FloatDistribution self) -> double"""
        return _IMP_saxs.FloatDistribution_get_bin_size(self)


    def get_index_from_distance(self, dist):
        """get_index_from_distance(FloatDistribution self, double dist) -> unsigned int"""
        return _IMP_saxs.FloatDistribution_get_index_from_distance(self, dist)


    def get_distance_from_index(self, index):
        """get_distance_from_index(FloatDistribution self, unsigned int index) -> double"""
        return _IMP_saxs.FloatDistribution_get_distance_from_index(self, index)

    __swig_destroy__ = _IMP_saxs.delete_FloatDistribution
    __del__ = lambda self: None
FloatDistribution_swigregister = _IMP_saxs.FloatDistribution_swigregister
FloatDistribution_swigregister(FloatDistribution)

class VectorDistribution(object):
    """Proxy of C++ IMP::saxs::Distribution<(IMP::algebra::Vector3D)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self, double bin_size) -> VectorDistribution
        __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self) -> VectorDistribution
        """
        this = _IMP_saxs.new_VectorDistribution(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_max_distance(self):
        """get_max_distance(VectorDistribution self) -> double"""
        return _IMP_saxs.VectorDistribution_get_max_distance(self)


    def get_bin_size(self):
        """get_bin_size(VectorDistribution self) -> double"""
        return _IMP_saxs.VectorDistribution_get_bin_size(self)


    def get_index_from_distance(self, dist):
        """get_index_from_distance(VectorDistribution self, double dist) -> unsigned int"""
        return _IMP_saxs.VectorDistribution_get_index_from_distance(self, dist)


    def get_distance_from_index(self, index):
        """get_distance_from_index(VectorDistribution self, unsigned int index) -> double"""
        return _IMP_saxs.VectorDistribution_get_distance_from_index(self, index)

    __swig_destroy__ = _IMP_saxs.delete_VectorDistribution
    __del__ = lambda self: None
VectorDistribution_swigregister = _IMP_saxs.VectorDistribution_swigregister
VectorDistribution_swigregister(VectorDistribution)

class RadialDistributionFunction(FloatDistribution):
    """Proxy of C++ IMP::saxs::RadialDistributionFunction class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::RadialDistributionFunction self, double bin_size) -> RadialDistributionFunction
        __init__(IMP::saxs::RadialDistributionFunction self) -> RadialDistributionFunction
        __init__(IMP::saxs::RadialDistributionFunction self, std::string const & file_name) -> RadialDistributionFunction
        """
        this = _IMP_saxs.new_RadialDistributionFunction(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def scale(self, c):
        """scale(RadialDistributionFunction self, double c)"""
        return _IMP_saxs.RadialDistributionFunction_scale(self, c)


    def add(self, model_pr):
        """add(RadialDistributionFunction self, RadialDistributionFunction model_pr)"""
        return _IMP_saxs.RadialDistributionFunction_add(self, model_pr)


    def show(self, *args):
        """
        show(RadialDistributionFunction self, _ostream out)
        show(RadialDistributionFunction self)
        """
        return _IMP_saxs.RadialDistributionFunction_show(self, *args)


    def R_factor_score(self, *args):
        """
        R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name) -> double
        R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> double
        """
        return _IMP_saxs.RadialDistributionFunction_R_factor_score(self, *args)


    def fit(self, *args):
        """
        fit(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name) -> double
        fit(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> double
        """
        return _IMP_saxs.RadialDistributionFunction_fit(self, *args)


    def normalize(self):
        """normalize(RadialDistributionFunction self)"""
        return _IMP_saxs.RadialDistributionFunction_normalize(self)


    def add_to_distribution(self, dist, value):
        """add_to_distribution(RadialDistributionFunction self, double dist, double value)"""
        return _IMP_saxs.RadialDistributionFunction_add_to_distribution(self, dist, value)

    __swig_destroy__ = _IMP_saxs.delete_RadialDistributionFunction
    __del__ = lambda self: None
RadialDistributionFunction_swigregister = _IMP_saxs.RadialDistributionFunction_swigregister
RadialDistributionFunction_swigregister(RadialDistributionFunction)

class DeltaDistributionFunction(VectorDistribution):
    """Proxy of C++ IMP::saxs::DeltaDistributionFunction class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles, double max_distance=0.0, double bin_size) -> DeltaDistributionFunction
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles, double max_distance=0.0) -> DeltaDistributionFunction
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::Particles const & particles) -> DeltaDistributionFunction
        """
        this = _IMP_saxs.new_DeltaDistributionFunction(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def calculate_derivative_distribution(self, particle):
        """calculate_derivative_distribution(DeltaDistributionFunction self, Particle particle)"""
        return _IMP_saxs.DeltaDistributionFunction_calculate_derivative_distribution(self, particle)


    def show(self, *args):
        """
        show(DeltaDistributionFunction self, _ostream out, std::string prefix)
        show(DeltaDistributionFunction self, _ostream out)
        show(DeltaDistributionFunction self)
        """
        return _IMP_saxs.DeltaDistributionFunction_show(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_DeltaDistributionFunction
    __del__ = lambda self: None
DeltaDistributionFunction_swigregister = _IMP_saxs.DeltaDistributionFunction_swigregister
DeltaDistributionFunction_swigregister(DeltaDistributionFunction)

class SolventAccessibleSurface(object):
    """Proxy of C++ IMP::saxs::SolventAccessibleSurface class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def get_solvent_accessibility(self, points, probe_radius=1.8, density=5.0):
        """
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, double probe_radius=1.8, double density=5.0) -> IMP::Vector< double >
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, double probe_radius=1.8) -> IMP::Vector< double >
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points) -> IMP::Vector< double >
        """
        return _IMP_saxs.SolventAccessibleSurface_get_solvent_accessibility(self, points, probe_radius, density)


    def __init__(self):
        """__init__(IMP::saxs::SolventAccessibleSurface self) -> SolventAccessibleSurface"""
        this = _IMP_saxs.new_SolventAccessibleSurface()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this
    __swig_destroy__ = _IMP_saxs.delete_SolventAccessibleSurface
    __del__ = lambda self: None
SolventAccessibleSurface_swigregister = _IMP_saxs.SolventAccessibleSurface_swigregister
SolventAccessibleSurface_swigregister(SolventAccessibleSurface)

class ProfileFitterChiLog(IMP.Object):
    """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile) -> ProfileFitterChiLog
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile, ChiScoreLog sf) -> ProfileFitterChiLog
        """
        this = _IMP_saxs.new_ProfileFitterChiLog(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, *args):
        """
        compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
        compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False) -> double
        compute_score(ProfileFitterChiLog self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterChiLog_compute_score(self, *args)


    def fit_profile(self, *args):
        """
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, double min_c1=0.95) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile) -> FitParameters
        """
        return _IMP_saxs.ProfileFitterChiLog_fit_profile(self, *args)


    def compute_scale_factor(self, model_profile, offset=0.0):
        """
        compute_scale_factor(ProfileFitterChiLog self, Profile model_profile, double offset=0.0) -> double
        compute_scale_factor(ProfileFitterChiLog self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterChiLog_compute_scale_factor(self, model_profile, offset)


    def compute_offset(self, model_profile):
        """compute_offset(ProfileFitterChiLog self, Profile model_profile) -> double"""
        return _IMP_saxs.ProfileFitterChiLog_compute_offset(self, model_profile)


    def resample(self, model_profile, resampled_profile):
        """resample(ProfileFitterChiLog self, Profile model_profile, Profile resampled_profile)"""
        return _IMP_saxs.ProfileFitterChiLog_resample(self, model_profile, resampled_profile)


    def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
        """
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, double const chi_square)
        """
        return _IMP_saxs.ProfileFitterChiLog_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)

    __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChiLog
    __del__ = lambda self: None
ProfileFitterChiLog_swigregister = _IMP_saxs.ProfileFitterChiLog_swigregister
ProfileFitterChiLog_swigregister(ProfileFitterChiLog)

class ProfileFitterRatioVolatility(IMP.Object):
    """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
    __repr__ = _swig_repr

    def __init__(self, *args):
        """
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> self, Profile exp_profile) -> ProfileFitterRatioVolatility
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::RatioVolatilityScore)> self, Profile exp_profile, IMP::saxs::RatioVolatilityScore * sf) -> ProfileFitterRatioVolatility
        """
        this = _IMP_saxs.new_ProfileFitterRatioVolatility(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def compute_score(self, *args):
        """
        compute_score(ProfileFitterRatioVolatility self, Profile model_profile, bool use_offset=False, std::string const fit_file_name) -> double
        compute_score(ProfileFitterRatioVolatility self, Profile model_profile, bool use_offset=False) -> double
        compute_score(ProfileFitterRatioVolatility self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterRatioVolatility_compute_score(self, *args)


    def fit_profile(self, *args):
        """
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False, std::string const fit_file_name) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=False) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95, double max_c1=1.05) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile, double min_c1=0.95) -> FitParameters
        fit_profile(ProfileFitterRatioVolatility self, Profile partial_profile) -> FitParameters
        """
        return _IMP_saxs.ProfileFitterRatioVolatility_fit_profile(self, *args)


    def compute_scale_factor(self, model_profile, offset=0.0):
        """
        compute_scale_factor(ProfileFitterRatioVolatility self, Profile model_profile, double offset=0.0) -> double
        compute_scale_factor(ProfileFitterRatioVolatility self, Profile model_profile) -> double
        """
        return _IMP_saxs.ProfileFitterRatioVolatility_compute_scale_factor(self, model_profile, offset)


    def compute_offset(self, model_profile):
        """compute_offset(ProfileFitterRatioVolatility self, Profile model_profile) -> double"""
        return _IMP_saxs.ProfileFitterRatioVolatility_compute_offset(self, model_profile)


    def resample(self, model_profile, resampled_profile):
        """resample(ProfileFitterRatioVolatility self, Profile model_profile, Profile resampled_profile)"""
        return _IMP_saxs.ProfileFitterRatioVolatility_resample(self, model_profile, resampled_profile)


    def write_SAXS_fit_file(self, file_name, model_profile, chi_square, c=1, offset=0):
        """
        write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1, double const offset=0)
        write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square, double const c=1)
        write_SAXS_fit_file(ProfileFitterRatioVolatility self, std::string const & file_name, Profile model_profile, double const chi_square)
        """
        return _IMP_saxs.ProfileFitterRatioVolatility_write_SAXS_fit_file(self, file_name, model_profile, chi_square, c, offset)

    __swig_destroy__ = _IMP_saxs.delete_ProfileFitterRatioVolatility
    __del__ = lambda self: None
ProfileFitterRatioVolatility_swigregister = _IMP_saxs.ProfileFitterRatioVolatility_swigregister
ProfileFitterRatioVolatility_swigregister(ProfileFitterRatioVolatility)


def get_module_version():
    """get_module_version() -> std::string const"""
    return _IMP_saxs.get_module_version()

def get_example_path(fname):
    """get_example_path(std::string fname) -> std::string"""
    return _IMP_saxs.get_example_path(fname)

def get_data_path(fname):
    """get_data_path(std::string fname) -> std::string"""
    return _IMP_saxs.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()