10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_misc')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_misc')
25 _IMP_misc = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_misc', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_misc', fp, pathname, description)
43 _IMP_misc = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_MISC_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_MISC_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_misc.delete_IMP_MISC_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_MISC_SwigPyIterator self) -> PyObject *"""
126 return _IMP_misc.IMP_MISC_SwigPyIterator_value(self)
131 incr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator
132 incr(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator
134 return _IMP_misc.IMP_MISC_SwigPyIterator_incr(self, n)
139 decr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator
140 decr(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator
142 return _IMP_misc.IMP_MISC_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_misc.IMP_MISC_SwigPyIterator_distance(self, x)
151 """equal(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
152 return _IMP_misc.IMP_MISC_SwigPyIterator_equal(self, x)
156 """copy(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator"""
157 return _IMP_misc.IMP_MISC_SwigPyIterator_copy(self)
161 """next(IMP_MISC_SwigPyIterator self) -> PyObject *"""
162 return _IMP_misc.IMP_MISC_SwigPyIterator_next(self)
166 """__next__(IMP_MISC_SwigPyIterator self) -> PyObject *"""
167 return _IMP_misc.IMP_MISC_SwigPyIterator___next__(self)
171 """previous(IMP_MISC_SwigPyIterator self) -> PyObject *"""
172 return _IMP_misc.IMP_MISC_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
177 return _IMP_misc.IMP_MISC_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
182 return _IMP_misc.IMP_MISC_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
187 return _IMP_misc.IMP_MISC_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
192 return _IMP_misc.IMP_MISC_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
197 return _IMP_misc.IMP_MISC_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
202 return _IMP_misc.IMP_MISC_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator
208 __sub__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_misc.IMP_MISC_SwigPyIterator___sub__(self, *args)
214 IMP_MISC_SwigPyIterator_swigregister = _IMP_misc.IMP_MISC_SwigPyIterator_swigregister
215 IMP_MISC_SwigPyIterator_swigregister(IMP_MISC_SwigPyIterator)
223 IMP_DEBUG = _IMP_misc.IMP_DEBUG
224 IMP_RELEASE = _IMP_misc.IMP_RELEASE
225 IMP_SILENT = _IMP_misc.IMP_SILENT
226 IMP_PROGRESS = _IMP_misc.IMP_PROGRESS
227 IMP_TERSE = _IMP_misc.IMP_TERSE
228 IMP_VERBOSE = _IMP_misc.IMP_VERBOSE
229 IMP_MEMORY = _IMP_misc.IMP_MEMORY
230 IMP_NONE = _IMP_misc.IMP_NONE
231 IMP_USAGE = _IMP_misc.IMP_USAGE
232 IMP_INTERNAL = _IMP_misc.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_misc.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_misc.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_misc.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_misc.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_misc.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_misc.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_misc.IMPKERNEL_SHOW_WARNINGS
244 class _DirectorObjects(object):
245 """@internal Simple class to keep references to director objects
246 to prevent premature deletion."""
249 def register(self, obj):
250 """Take a reference to a director object; will only work for
251 refcounted C++ classes"""
252 if hasattr(obj,
'get_ref_count'):
253 self._objects.append(obj)
255 """Only drop our reference and allow cleanup by Python if no other
256 Python references exist (we hold 3 references: one in self._objects,
257 one in x, and one in the argument list for getrefcount) *and* no
258 other C++ references exist (the Python object always holds one)"""
259 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
260 or x.get_ref_count() > 1]
264 def get_object_count(self):
265 """Get number of director objects (useful for testing only)"""
266 return len(self._objects)
267 _director_objects = _DirectorObjects()
269 class _ostream(object):
270 """Proxy of C++ std::ostream class."""
272 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
274 def __init__(self, *args, **kwargs):
275 raise AttributeError(
"No constructor defined")
276 __repr__ = _swig_repr
278 def write(self, osa_buf):
279 """write(_ostream self, char const * osa_buf)"""
280 return _IMP_misc._ostream_write(self, osa_buf)
282 _ostream_swigregister = _IMP_misc._ostream_swigregister
283 _ostream_swigregister(_ostream)
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_misc.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_misc.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_misc.IMP_HAS_NOEXCEPT
288 IMP_C_OPEN_BINARY = _IMP_misc.IMP_C_OPEN_BINARY
290 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_FILESYSTEM
291 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
292 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_misc.IMP_CGAL_HAS_BOOST_RANDOM
293 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_SYSTEM
294 IMPCGAL_SHOW_WARNINGS = _IMP_misc.IMPCGAL_SHOW_WARNINGS
296 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_IMP_CGAL
297 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
298 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
299 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_RANDOM
300 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_SYSTEM
301 IMP_ALGEBRA_HAS_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_CGAL
302 IMP_ALGEBRA_HAS_ANN = _IMP_misc.IMP_ALGEBRA_HAS_ANN
303 IMPALGEBRA_SHOW_WARNINGS = _IMP_misc.IMPALGEBRA_SHOW_WARNINGS
305 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_misc.IMP_DISPLAY_HAS_IMP_CGAL
306 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
307 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
308 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_RANDOM
309 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_SYSTEM
310 IMP_DISPLAY_HAS_CGAL = _IMP_misc.IMP_DISPLAY_HAS_CGAL
311 IMPDISPLAY_SHOW_WARNINGS = _IMP_misc.IMPDISPLAY_SHOW_WARNINGS
313 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
314 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
315 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
316 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
317 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
318 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_CGAL
319 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_HDF5
320 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_misc.IMPSCOREFUNCTOR_SHOW_WARNINGS
322 IMP_CORE_HAS_IMP_CGAL = _IMP_misc.IMP_CORE_HAS_IMP_CGAL
323 IMP_CORE_HAS_IMP_KERNEL = _IMP_misc.IMP_CORE_HAS_IMP_KERNEL
324 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_FILESYSTEM
325 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
326 IMP_CORE_HAS_BOOST_RANDOM = _IMP_misc.IMP_CORE_HAS_BOOST_RANDOM
327 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_SYSTEM
328 IMP_CORE_HAS_CGAL = _IMP_misc.IMP_CORE_HAS_CGAL
329 IMP_CORE_HAS_HDF5 = _IMP_misc.IMP_CORE_HAS_HDF5
330 IMPCORE_SHOW_WARNINGS = _IMP_misc.IMPCORE_SHOW_WARNINGS
332 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_misc.IMP_CONTAINER_HAS_IMP_ALGEBRA
333 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_misc.IMP_CONTAINER_HAS_IMP_CGAL
334 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_misc.IMP_CONTAINER_HAS_IMP_DISPLAY
335 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_misc.IMP_CONTAINER_HAS_IMP_KERNEL
336 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
337 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
338 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
339 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_RANDOM
340 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_SYSTEM
341 IMP_CONTAINER_HAS_CGAL = _IMP_misc.IMP_CONTAINER_HAS_CGAL
342 IMP_CONTAINER_HAS_HDF5 = _IMP_misc.IMP_CONTAINER_HAS_HDF5
343 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_misc.IMP_CONTAINER_HAS_PYTHON_IHM
344 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_misc.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
345 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_misc.IMP_CONTAINER_HAS_ROBIN_MAP
346 IMPCONTAINER_SHOW_WARNINGS = _IMP_misc.IMPCONTAINER_SHOW_WARNINGS
348 IMP_ATOM_HAS_IMP_CGAL = _IMP_misc.IMP_ATOM_HAS_IMP_CGAL
349 IMP_ATOM_HAS_IMP_KERNEL = _IMP_misc.IMP_ATOM_HAS_IMP_KERNEL
350 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
351 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
352 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_misc.IMP_ATOM_HAS_BOOST_RANDOM
353 IMP_ATOM_HAS_BOOST_REGEX = _IMP_misc.IMP_ATOM_HAS_BOOST_REGEX
354 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ATOM_HAS_BOOST_SYSTEM
355 IMP_ATOM_HAS_CGAL = _IMP_misc.IMP_ATOM_HAS_CGAL
356 IMP_ATOM_HAS_HDF5 = _IMP_misc.IMP_ATOM_HAS_HDF5
357 IMP_ATOM_HAS_PYTHON_IHM = _IMP_misc.IMP_ATOM_HAS_PYTHON_IHM
358 IMPATOM_SHOW_WARNINGS = _IMP_misc.IMPATOM_SHOW_WARNINGS
359 IMP_ATOM_TYPE_INDEX = _IMP_misc.IMP_ATOM_TYPE_INDEX
360 IMP_RESIDUE_TYPE_INDEX = _IMP_misc.IMP_RESIDUE_TYPE_INDEX
361 IMP_HIERARCHY_TYPE_INDEX = _IMP_misc.IMP_HIERARCHY_TYPE_INDEX
362 IMP_CHAIN_TYPE_INDEX = _IMP_misc.IMP_CHAIN_TYPE_INDEX
364 IMP_MISC_HAS_IMP_ALGEBRA = _IMP_misc.IMP_MISC_HAS_IMP_ALGEBRA
365 IMP_MISC_HAS_IMP_CGAL = _IMP_misc.IMP_MISC_HAS_IMP_CGAL
366 IMP_MISC_HAS_IMP_CONTAINER = _IMP_misc.IMP_MISC_HAS_IMP_CONTAINER
367 IMP_MISC_HAS_IMP_DISPLAY = _IMP_misc.IMP_MISC_HAS_IMP_DISPLAY
368 IMP_MISC_HAS_IMP_KERNEL = _IMP_misc.IMP_MISC_HAS_IMP_KERNEL
369 IMP_MISC_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_MISC_HAS_IMP_SCORE_FUNCTOR
370 IMP_MISC_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_FILESYSTEM
371 IMP_MISC_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_MISC_HAS_BOOST_PROGRAMOPTIONS
372 IMP_MISC_HAS_BOOST_RANDOM = _IMP_misc.IMP_MISC_HAS_BOOST_RANDOM
373 IMP_MISC_HAS_BOOST_REGEX = _IMP_misc.IMP_MISC_HAS_BOOST_REGEX
374 IMP_MISC_HAS_BOOST_SYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_SYSTEM
375 IMP_MISC_HAS_CGAL = _IMP_misc.IMP_MISC_HAS_CGAL
376 IMP_MISC_HAS_HDF5 = _IMP_misc.IMP_MISC_HAS_HDF5
377 IMP_MISC_HAS_PYTHON_IHM = _IMP_misc.IMP_MISC_HAS_PYTHON_IHM
378 IMPMISC_SHOW_WARNINGS = _IMP_misc.IMPMISC_SHOW_WARNINGS
380 _object_types.append(
"WormLikeChain")
383 def _object_cast_to_WormLikeChain(o):
384 """_object_cast_to_WormLikeChain(Object o) -> WormLikeChain"""
385 return _IMP_misc._object_cast_to_WormLikeChain(o)
387 _object_types.append(
"FreelyJointedChain")
390 def _object_cast_to_FreelyJointedChain(o):
391 """_object_cast_to_FreelyJointedChain(Object o) -> FreelyJointedChain"""
392 return _IMP_misc._object_cast_to_FreelyJointedChain(o)
394 _object_types.append(
"StateAdaptor")
397 def _object_cast_to_StateAdaptor(o):
398 """_object_cast_to_StateAdaptor(Object o) -> StateAdaptor"""
399 return _IMP_misc._object_cast_to_StateAdaptor(o)
401 _object_types.append(
"CommonEndpointPairFilter")
404 def _object_cast_to_CommonEndpointPairFilter(o):
405 """_object_cast_to_CommonEndpointPairFilter(Object o) -> CommonEndpointPairFilter"""
406 return _IMP_misc._object_cast_to_CommonEndpointPairFilter(o)
408 _object_types.append(
"LogPairScore")
411 def _object_cast_to_LogPairScore(o):
412 """_object_cast_to_LogPairScore(Object o) -> LogPairScore"""
413 return _IMP_misc._object_cast_to_LogPairScore(o)
415 _object_types.append(
"LowestRefinedPairScore")
418 def _object_cast_to_LowestRefinedPairScore(o):
419 """_object_cast_to_LowestRefinedPairScore(Object o) -> LowestRefinedPairScore"""
420 return _IMP_misc._object_cast_to_LowestRefinedPairScore(o)
422 _object_types.append(
"SoftCylinderPairScore")
425 def _object_cast_to_SoftCylinderPairScore(o):
426 """_object_cast_to_SoftCylinderPairScore(Object o) -> SoftCylinderPairScore"""
427 return _IMP_misc._object_cast_to_SoftCylinderPairScore(o)
429 _object_types.append(
"DecayPairContainerOptimizerState")
432 def _object_cast_to_DecayPairContainerOptimizerState(o):
433 """_object_cast_to_DecayPairContainerOptimizerState(Object o) -> DecayPairContainerOptimizerState"""
434 return _IMP_misc._object_cast_to_DecayPairContainerOptimizerState(o)
436 def CustomXYZRs(l=[]):
437 return [CustomXYZR(x)
for x
in l]
438 _plural_types.append(
"CustomXYZRs")
441 _value_types.append(
"CustomXYZR")
444 """Proxy of C++ IMP::misc::WormLikeChain class."""
446 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
448 def __init__(self, l_max, lp):
449 """__init__(IMP::misc::WormLikeChain self, IMP::Float l_max, IMP::Float lp) -> WormLikeChain"""
450 this = _IMP_misc.new_WormLikeChain(l_max, lp)
452 self.this.append(this)
453 except __builtin__.Exception:
457 """get_version_info(WormLikeChain self) -> VersionInfo"""
458 return _IMP_misc.WormLikeChain_get_version_info(self)
461 def do_show(self, out):
462 """do_show(WormLikeChain self, _ostream out)"""
463 return _IMP_misc.WormLikeChain_do_show(self, out)
467 """__str__(WormLikeChain self) -> std::string"""
468 return _IMP_misc.WormLikeChain___str__(self)
472 """__repr__(WormLikeChain self) -> std::string"""
473 return _IMP_misc.WormLikeChain___repr__(self)
478 return _object_cast_to_WormLikeChain(o)
480 WormLikeChain_swigregister = _IMP_misc.WormLikeChain_swigregister
481 WormLikeChain_swigregister(WormLikeChain)
484 """Proxy of C++ IMP::misc::FreelyJointedChain class."""
486 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
488 def __init__(self, link_num, link_length):
489 """__init__(IMP::misc::FreelyJointedChain self, int link_num, double link_length) -> FreelyJointedChain"""
490 this = _IMP_misc.new_FreelyJointedChain(link_num, link_length)
492 self.this.append(this)
493 except __builtin__.Exception:
497 """get_version_info(FreelyJointedChain self) -> VersionInfo"""
498 return _IMP_misc.FreelyJointedChain_get_version_info(self)
501 def get_link_number(self):
502 """get_link_number(FreelyJointedChain self) -> int"""
503 return _IMP_misc.FreelyJointedChain_get_link_number(self)
506 def get_link_length(self):
507 """get_link_length(FreelyJointedChain self) -> double"""
508 return _IMP_misc.FreelyJointedChain_get_link_length(self)
511 def set_link_number(self, N):
512 """set_link_number(FreelyJointedChain self, int N)"""
513 return _IMP_misc.FreelyJointedChain_set_link_number(self, N)
516 def set_link_length(self, b):
517 """set_link_length(FreelyJointedChain self, double b)"""
518 return _IMP_misc.FreelyJointedChain_set_link_length(self, b)
521 def get_distance_at_minimum(self):
522 """get_distance_at_minimum(FreelyJointedChain self) -> double"""
523 return _IMP_misc.FreelyJointedChain_get_distance_at_minimum(self)
526 def get_average_distance(self):
527 """get_average_distance(FreelyJointedChain self) -> double"""
528 return _IMP_misc.FreelyJointedChain_get_average_distance(self)
532 """__str__(FreelyJointedChain self) -> std::string"""
533 return _IMP_misc.FreelyJointedChain___str__(self)
537 """__repr__(FreelyJointedChain self) -> std::string"""
538 return _IMP_misc.FreelyJointedChain___repr__(self)
543 return _object_cast_to_FreelyJointedChain(o)
545 FreelyJointedChain_swigregister = _IMP_misc.FreelyJointedChain_swigregister
546 FreelyJointedChain_swigregister(FreelyJointedChain)
549 """Proxy of C++ IMP::misc::LowestRefinedPairScore class."""
551 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
553 def __init__(self, r, f):
554 """__init__(IMP::misc::LowestRefinedPairScore self, Refiner r, PairScore f) -> LowestRefinedPairScore"""
555 this = _IMP_misc.new_LowestRefinedPairScore(r, f)
557 self.this.append(this)
558 except __builtin__.Exception:
562 """do_get_inputs(LowestRefinedPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
563 return _IMP_misc.LowestRefinedPairScore_do_get_inputs(self, m, pis)
567 """get_version_info(LowestRefinedPairScore self) -> VersionInfo"""
568 return _IMP_misc.LowestRefinedPairScore_get_version_info(self)
572 """__str__(LowestRefinedPairScore self) -> std::string"""
573 return _IMP_misc.LowestRefinedPairScore___str__(self)
577 """__repr__(LowestRefinedPairScore self) -> std::string"""
578 return _IMP_misc.LowestRefinedPairScore___repr__(self)
583 return _object_cast_to_LowestRefinedPairScore(o)
585 LowestRefinedPairScore_swigregister = _IMP_misc.LowestRefinedPairScore_swigregister
586 LowestRefinedPairScore_swigregister(LowestRefinedPairScore)
589 """Proxy of C++ IMP::misc::LogPairScore class."""
591 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
594 """__init__(IMP::misc::LogPairScore self) -> LogPairScore"""
595 this = _IMP_misc.new_LogPairScore()
597 self.this.append(this)
598 except __builtin__.Exception:
602 """do_get_inputs(LogPairScore self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
603 return _IMP_misc.LogPairScore_do_get_inputs(self, arg2, arg3)
607 """get_version_info(LogPairScore self) -> VersionInfo"""
608 return _IMP_misc.LogPairScore_get_version_info(self)
611 def get_particle_pairs(self):
612 """get_particle_pairs(LogPairScore self) -> IMP::ParticlePairsTemp"""
613 return _IMP_misc.LogPairScore_get_particle_pairs(self)
617 """clear(LogPairScore self)"""
618 return _IMP_misc.LogPairScore_clear(self)
621 def get_contains(self, pp):
622 """get_contains(LogPairScore self, IMP::ParticlePair const & pp) -> bool"""
623 return _IMP_misc.LogPairScore_get_contains(self, pp)
627 """__str__(LogPairScore self) -> std::string"""
628 return _IMP_misc.LogPairScore___str__(self)
632 """__repr__(LogPairScore self) -> std::string"""
633 return _IMP_misc.LogPairScore___repr__(self)
638 return _object_cast_to_LogPairScore(o)
640 LogPairScore_swigregister = _IMP_misc.LogPairScore_swigregister
641 LogPairScore_swigregister(LogPairScore)
644 """Proxy of C++ IMP::misc::StateAdaptor class."""
646 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
648 def __init__(self, m, before, after):
649 """__init__(IMP::misc::StateAdaptor self, Model m, OptimizerState before, OptimizerState after) -> StateAdaptor"""
650 this = _IMP_misc.new_StateAdaptor(m, before, after)
652 self.this.append(this)
653 except __builtin__.Exception:
656 def do_before_evaluate(self):
657 """do_before_evaluate(StateAdaptor self)"""
658 return _IMP_misc.StateAdaptor_do_before_evaluate(self)
661 def do_after_evaluate(self, da):
662 """do_after_evaluate(StateAdaptor self, DerivativeAccumulator da)"""
663 return _IMP_misc.StateAdaptor_do_after_evaluate(self, da)
667 """do_get_inputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
668 return _IMP_misc.StateAdaptor_do_get_inputs(self)
672 """do_get_outputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
673 return _IMP_misc.StateAdaptor_do_get_outputs(self)
677 """get_version_info(StateAdaptor self) -> VersionInfo"""
678 return _IMP_misc.StateAdaptor_get_version_info(self)
682 """__str__(StateAdaptor self) -> std::string"""
683 return _IMP_misc.StateAdaptor___str__(self)
687 """__repr__(StateAdaptor self) -> std::string"""
688 return _IMP_misc.StateAdaptor___repr__(self)
693 return _object_cast_to_StateAdaptor(o)
695 StateAdaptor_swigregister = _IMP_misc.StateAdaptor_swigregister
696 StateAdaptor_swigregister(StateAdaptor)
699 """Proxy of C++ IMP::misc::CommonEndpointPairFilter class."""
701 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
704 """__init__(IMP::misc::CommonEndpointPairFilter self) -> CommonEndpointPairFilter"""
705 this = _IMP_misc.new_CommonEndpointPairFilter()
707 self.this.append(this)
708 except __builtin__.Exception:
712 """do_get_inputs(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
713 return _IMP_misc.CommonEndpointPairFilter_do_get_inputs(self, m, pis)
716 def get_value(self, *args):
718 get_value(CommonEndpointPairFilter self, IMP::ParticlePair const & a) -> int
719 get_value(CommonEndpointPairFilter self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
721 return _IMP_misc.CommonEndpointPairFilter_get_value(self, *args)
724 def get_value_index(self, *args):
726 get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPair const & p) -> int
727 get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
729 return _IMP_misc.CommonEndpointPairFilter_get_value_index(self, *args)
733 """get_version_info(CommonEndpointPairFilter self) -> VersionInfo"""
734 return _IMP_misc.CommonEndpointPairFilter_get_version_info(self)
738 """__str__(CommonEndpointPairFilter self) -> std::string"""
739 return _IMP_misc.CommonEndpointPairFilter___str__(self)
743 """__repr__(CommonEndpointPairFilter self) -> std::string"""
744 return _IMP_misc.CommonEndpointPairFilter___repr__(self)
749 return _object_cast_to_CommonEndpointPairFilter(o)
751 CommonEndpointPairFilter_swigregister = _IMP_misc.CommonEndpointPairFilter_swigregister
752 CommonEndpointPairFilter_swigregister(CommonEndpointPairFilter)
755 """Proxy of C++ IMP::misc::CustomXYZR class."""
757 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
759 def get_decorator_traits(self):
760 """get_decorator_traits(CustomXYZR self) -> FloatKey"""
761 return _IMP_misc.CustomXYZR_get_decorator_traits(self)
764 def get_default_decorator_traits():
765 """get_default_decorator_traits() -> FloatKey"""
766 return _IMP_misc.CustomXYZR_get_default_decorator_traits()
768 get_default_decorator_traits = staticmethod(get_default_decorator_traits)
770 def __init__(self, *args):
772 __init__(IMP::misc::CustomXYZR self) -> CustomXYZR
773 __init__(IMP::misc::CustomXYZR self, Model m, ParticleIndex id, FloatKey tr) -> CustomXYZR
774 __init__(IMP::misc::CustomXYZR self, Model m, ParticleIndex id) -> CustomXYZR
775 __init__(IMP::misc::CustomXYZR self, _ParticleAdaptor d, FloatKey tr) -> CustomXYZR
776 __init__(IMP::misc::CustomXYZR self, _ParticleAdaptor d) -> CustomXYZR
778 this = _IMP_misc.new_CustomXYZR(*args)
780 self.this.append(this)
781 except __builtin__.Exception:
784 def show(self, *args):
786 show(CustomXYZR self, _ostream out)
787 show(CustomXYZR self)
789 return _IMP_misc.CustomXYZR_show(self, *args)
792 def setup_particle(*args):
794 setup_particle(Model m, ParticleIndex pi, FloatKey tr) -> CustomXYZR
795 setup_particle(Model m, ParticleIndex pi) -> CustomXYZR
796 setup_particle(_ParticleAdaptor d, FloatKey tr) -> CustomXYZR
797 setup_particle(_ParticleAdaptor d) -> CustomXYZR
798 setup_particle(Model m, ParticleIndex pi, double radius, FloatKey tr) -> CustomXYZR
799 setup_particle(Model m, ParticleIndex pi, double radius) -> CustomXYZR
800 setup_particle(_ParticleAdaptor d, double radius, FloatKey tr) -> CustomXYZR
801 setup_particle(_ParticleAdaptor d, double radius) -> CustomXYZR
802 setup_particle(Model m, ParticleIndex pi, Sphere3D ball, FloatKey tr) -> CustomXYZR
803 setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> CustomXYZR
804 setup_particle(_ParticleAdaptor d, Sphere3D ball, FloatKey tr) -> CustomXYZR
805 setup_particle(_ParticleAdaptor d, Sphere3D ball) -> CustomXYZR
807 return _IMP_misc.CustomXYZR_setup_particle(*args)
809 setup_particle = staticmethod(setup_particle)
811 def get_is_setup(*args):
813 get_is_setup(_ParticleAdaptor p, FloatKey tr) -> bool
814 get_is_setup(_ParticleAdaptor p) -> bool
815 get_is_setup(Model m, ParticleIndex pi, FloatKey radius_key) -> bool
816 get_is_setup(Model m, ParticleIndex pi) -> bool
818 return _IMP_misc.CustomXYZR_get_is_setup(*args)
820 get_is_setup = staticmethod(get_is_setup)
822 def get_radius(self):
823 """get_radius(CustomXYZR self) -> IMP::Float"""
824 return _IMP_misc.CustomXYZR_get_radius(self)
827 def set_radius(self, t):
828 """set_radius(CustomXYZR self, IMP::Float t)"""
829 return _IMP_misc.CustomXYZR_set_radius(self, t)
832 def get_sphere(self):
833 """get_sphere(CustomXYZR self) -> Sphere3D"""
834 return _IMP_misc.CustomXYZR_get_sphere(self)
837 def set_sphere(self, s):
838 """set_sphere(CustomXYZR self, Sphere3D s)"""
839 return _IMP_misc.CustomXYZR_set_sphere(self, s)
842 def get_default_radius_key():
843 """get_default_radius_key() -> FloatKey"""
844 return _IMP_misc.CustomXYZR_get_default_radius_key()
846 get_default_radius_key = staticmethod(get_default_radius_key)
848 def add_to_radius_derivative(self, v, d):
849 """add_to_radius_derivative(CustomXYZR self, double v, DerivativeAccumulator d)"""
850 return _IMP_misc.CustomXYZR_add_to_radius_derivative(self, v, d)
853 def get_traits(self):
854 """get_traits(CustomXYZR self) -> FloatKey"""
855 return _IMP_misc.CustomXYZR_get_traits(self)
858 def add_attribute(self, *args):
860 add_attribute(CustomXYZR self, FloatKey k, IMP::Float v, bool opt)
861 add_attribute(CustomXYZR self, FloatKey a0, IMP::Float a1)
862 add_attribute(CustomXYZR self, IntKey a0, IMP::Int a1)
863 add_attribute(CustomXYZR self, StringKey a0, IMP::String a1)
864 add_attribute(CustomXYZR self, ParticleIndexKey a0, Particle a1)
865 add_attribute(CustomXYZR self, ObjectKey a0, Object a1)
867 return _IMP_misc.CustomXYZR_add_attribute(self, *args)
870 def get_value(self, *args):
872 get_value(CustomXYZR self, FloatKey a0) -> IMP::Float
873 get_value(CustomXYZR self, IntKey a0) -> IMP::Int
874 get_value(CustomXYZR self, StringKey a0) -> IMP::String
875 get_value(CustomXYZR self, ParticleIndexKey a0) -> Particle
876 get_value(CustomXYZR self, ObjectKey a0) -> Object
878 return _IMP_misc.CustomXYZR_get_value(self, *args)
881 def set_value(self, *args):
883 set_value(CustomXYZR self, FloatKey a0, IMP::Float a1)
884 set_value(CustomXYZR self, IntKey a0, IMP::Int a1)
885 set_value(CustomXYZR self, StringKey a0, IMP::String a1)
886 set_value(CustomXYZR self, ParticleIndexKey a0, Particle a1)
887 set_value(CustomXYZR self, ObjectKey a0, Object a1)
889 return _IMP_misc.CustomXYZR_set_value(self, *args)
892 def remove_attribute(self, *args):
894 remove_attribute(CustomXYZR self, FloatKey a0)
895 remove_attribute(CustomXYZR self, IntKey a0)
896 remove_attribute(CustomXYZR self, StringKey a0)
897 remove_attribute(CustomXYZR self, ParticleIndexKey a0)
898 remove_attribute(CustomXYZR self, ObjectKey a0)
900 return _IMP_misc.CustomXYZR_remove_attribute(self, *args)
903 def has_attribute(self, *args):
905 has_attribute(CustomXYZR self, FloatKey a0) -> bool
906 has_attribute(CustomXYZR self, IntKey a0) -> bool
907 has_attribute(CustomXYZR self, StringKey a0) -> bool
908 has_attribute(CustomXYZR self, ParticleIndexKey a0) -> bool
909 has_attribute(CustomXYZR self, ObjectKey a0) -> bool
911 return _IMP_misc.CustomXYZR_has_attribute(self, *args)
914 def get_derivative(self, a0):
915 """get_derivative(CustomXYZR self, FloatKey a0) -> double"""
916 return _IMP_misc.CustomXYZR_get_derivative(self, a0)
920 """get_name(CustomXYZR self) -> std::string"""
921 return _IMP_misc.CustomXYZR_get_name(self)
925 """clear_caches(CustomXYZR self)"""
926 return _IMP_misc.CustomXYZR_clear_caches(self)
929 def set_name(self, a0):
930 """set_name(CustomXYZR self, std::string a0)"""
931 return _IMP_misc.CustomXYZR_set_name(self, a0)
935 """set_check_level(CustomXYZR self, IMP::CheckLevel a0)"""
936 return _IMP_misc.CustomXYZR_set_check_level(self, a0)
939 def add_to_derivative(self, a0, a1, a2):
940 """add_to_derivative(CustomXYZR self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
941 return _IMP_misc.CustomXYZR_add_to_derivative(self, a0, a1, a2)
944 def set_is_optimized(self, a0, a1):
945 """set_is_optimized(CustomXYZR self, FloatKey a0, bool a1)"""
946 return _IMP_misc.CustomXYZR_set_is_optimized(self, a0, a1)
949 def get_is_optimized(self, a0):
950 """get_is_optimized(CustomXYZR self, FloatKey a0) -> bool"""
951 return _IMP_misc.CustomXYZR_get_is_optimized(self, a0)
954 def get_check_level(self):
955 """get_check_level(CustomXYZR self) -> IMP::CheckLevel"""
956 return _IMP_misc.CustomXYZR_get_check_level(self)
959 def __eq__(self, *args):
961 __eq__(CustomXYZR self, CustomXYZR o) -> bool
962 __eq__(CustomXYZR self, Particle d) -> bool
964 return _IMP_misc.CustomXYZR___eq__(self, *args)
967 def __ne__(self, *args):
969 __ne__(CustomXYZR self, CustomXYZR o) -> bool
970 __ne__(CustomXYZR self, Particle d) -> bool
972 return _IMP_misc.CustomXYZR___ne__(self, *args)
975 def __le__(self, *args):
977 __le__(CustomXYZR self, CustomXYZR o) -> bool
978 __le__(CustomXYZR self, Particle d) -> bool
980 return _IMP_misc.CustomXYZR___le__(self, *args)
983 def __lt__(self, *args):
985 __lt__(CustomXYZR self, CustomXYZR o) -> bool
986 __lt__(CustomXYZR self, Particle d) -> bool
988 return _IMP_misc.CustomXYZR___lt__(self, *args)
991 def __ge__(self, *args):
993 __ge__(CustomXYZR self, CustomXYZR o) -> bool
994 __ge__(CustomXYZR self, Particle d) -> bool
996 return _IMP_misc.CustomXYZR___ge__(self, *args)
999 def __gt__(self, *args):
1001 __gt__(CustomXYZR self, CustomXYZR o) -> bool
1002 __gt__(CustomXYZR self, Particle d) -> bool
1004 return _IMP_misc.CustomXYZR___gt__(self, *args)
1008 """__hash__(CustomXYZR self) -> std::size_t"""
1009 return _IMP_misc.CustomXYZR___hash__(self)
1013 """__str__(CustomXYZR self) -> std::string"""
1014 return _IMP_misc.CustomXYZR___str__(self)
1018 """__repr__(CustomXYZR self) -> std::string"""
1019 return _IMP_misc.CustomXYZR___repr__(self)
1021 __swig_destroy__ = _IMP_misc.delete_CustomXYZR
1022 __del__ =
lambda self:
None
1023 CustomXYZR_swigregister = _IMP_misc.CustomXYZR_swigregister
1024 CustomXYZR_swigregister(CustomXYZR)
1026 def CustomXYZR_get_default_decorator_traits():
1027 """CustomXYZR_get_default_decorator_traits() -> FloatKey"""
1028 return _IMP_misc.CustomXYZR_get_default_decorator_traits()
1030 def CustomXYZR_setup_particle(*args):
1032 setup_particle(Model m, ParticleIndex pi, FloatKey tr) -> CustomXYZR
1033 setup_particle(Model m, ParticleIndex pi) -> CustomXYZR
1034 setup_particle(_ParticleAdaptor d, FloatKey tr) -> CustomXYZR
1035 setup_particle(_ParticleAdaptor d) -> CustomXYZR
1036 setup_particle(Model m, ParticleIndex pi, double radius, FloatKey tr) -> CustomXYZR
1037 setup_particle(Model m, ParticleIndex pi, double radius) -> CustomXYZR
1038 setup_particle(_ParticleAdaptor d, double radius, FloatKey tr) -> CustomXYZR
1039 setup_particle(_ParticleAdaptor d, double radius) -> CustomXYZR
1040 setup_particle(Model m, ParticleIndex pi, Sphere3D ball, FloatKey tr) -> CustomXYZR
1041 setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> CustomXYZR
1042 setup_particle(_ParticleAdaptor d, Sphere3D ball, FloatKey tr) -> CustomXYZR
1043 CustomXYZR_setup_particle(_ParticleAdaptor d, Sphere3D ball) -> CustomXYZR
1045 return _IMP_misc.CustomXYZR_setup_particle(*args)
1047 def CustomXYZR_get_is_setup(*args):
1049 get_is_setup(_ParticleAdaptor p, FloatKey tr) -> bool
1050 get_is_setup(_ParticleAdaptor p) -> bool
1051 get_is_setup(Model m, ParticleIndex pi, FloatKey radius_key) -> bool
1052 CustomXYZR_get_is_setup(Model m, ParticleIndex pi) -> bool
1054 return _IMP_misc.CustomXYZR_get_is_setup(*args)
1056 def CustomXYZR_get_default_radius_key():
1057 """CustomXYZR_get_default_radius_key() -> FloatKey"""
1058 return _IMP_misc.CustomXYZR_get_default_radius_key()
1061 def __lshift__(out, n):
1062 """__lshift__(_ostream out, CustomXYZR n) -> _ostream"""
1063 return _IMP_misc.__lshift__(out, n)
1066 """get_distance(CustomXYZR a, CustomXYZR b) -> double"""
1067 return _IMP_misc.get_distance(a, b)
1070 """get_sphere_d_geometry(CustomXYZR d) -> Sphere3D"""
1071 return _IMP_misc.get_sphere_d_geometry(d)
1074 """set_sphere_d_geometry(CustomXYZR d, Sphere3D v)"""
1075 return _IMP_misc.set_sphere_d_geometry(d, v)
1077 """Proxy of C++ IMP::misc::SoftCylinderPairScore class."""
1079 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1081 def __init__(self, k):
1082 """__init__(IMP::misc::SoftCylinderPairScore self, double k) -> SoftCylinderPairScore"""
1083 this = _IMP_misc.new_SoftCylinderPairScore(k)
1085 self.this.append(this)
1086 except __builtin__.Exception:
1090 """do_get_inputs(SoftCylinderPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1091 return _IMP_misc.SoftCylinderPairScore_do_get_inputs(self, m, pis)
1095 """get_version_info(SoftCylinderPairScore self) -> VersionInfo"""
1096 return _IMP_misc.SoftCylinderPairScore_get_version_info(self)
1100 """__str__(SoftCylinderPairScore self) -> std::string"""
1101 return _IMP_misc.SoftCylinderPairScore___str__(self)
1105 """__repr__(SoftCylinderPairScore self) -> std::string"""
1106 return _IMP_misc.SoftCylinderPairScore___repr__(self)
1111 return _object_cast_to_SoftCylinderPairScore(o)
1113 SoftCylinderPairScore_swigregister = _IMP_misc.SoftCylinderPairScore_swigregister
1114 SoftCylinderPairScore_swigregister(SoftCylinderPairScore)
1117 """Proxy of C++ IMP::misc::DecayPairContainerOptimizerState class."""
1119 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1121 def __init__(self, *args):
1123 __init__(IMP::misc::DecayPairContainerOptimizerState self, Model m, PairPredicate pred, IMP::ParticleIndexPairs const & initial_list, std::string name) -> DecayPairContainerOptimizerState
1124 __init__(IMP::misc::DecayPairContainerOptimizerState self, Model m, PairPredicate pred, IMP::ParticleIndexPairs const & initial_list) -> DecayPairContainerOptimizerState
1126 this = _IMP_misc.new_DecayPairContainerOptimizerState(*args)
1128 self.this.append(this)
1129 except __builtin__.Exception:
1132 def get_output_container(self):
1133 """get_output_container(DecayPairContainerOptimizerState self) -> PairContainer"""
1134 return _IMP_misc.DecayPairContainerOptimizerState_get_output_container(self)
1137 def do_update(self, call_num):
1138 """do_update(DecayPairContainerOptimizerState self, unsigned int call_num)"""
1139 return _IMP_misc.DecayPairContainerOptimizerState_do_update(self, call_num)
1143 """get_version_info(DecayPairContainerOptimizerState self) -> VersionInfo"""
1144 return _IMP_misc.DecayPairContainerOptimizerState_get_version_info(self)
1148 """__str__(DecayPairContainerOptimizerState self) -> std::string"""
1149 return _IMP_misc.DecayPairContainerOptimizerState___str__(self)
1153 """__repr__(DecayPairContainerOptimizerState self) -> std::string"""
1154 return _IMP_misc.DecayPairContainerOptimizerState___repr__(self)
1159 return _object_cast_to_DecayPairContainerOptimizerState(o)
1161 DecayPairContainerOptimizerState_swigregister = _IMP_misc.DecayPairContainerOptimizerState_swigregister
1162 DecayPairContainerOptimizerState_swigregister(DecayPairContainerOptimizerState)
1165 def get_module_version():
1166 """get_module_version() -> std::string const"""
1167 return _IMP_misc.get_module_version()
1170 """get_example_path(std::string fname) -> std::string"""
1171 return _IMP_misc.get_example_path(fname)
1174 """get_data_path(std::string fname) -> std::string"""
1175 return _IMP_misc.get_data_path(fname)
1177 from .
import _version_check
1178 _version_check.check_version(get_module_version())
1179 __version__ = get_module_version()
Abstract class for scoring object(s) of type ParticleIndexPair.
Various classes to hold sets of particles.
const algebra::Sphere3D get_sphere_d_geometry(CustomXYZR d)
Make CGAL functionality available to IMP.
virtual void clear_caches()
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
Composable functors to implement scores via compile-time composition.
ScoreStates maintain invariants in the Model.
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
A decorator for a particle with x,y,z coordinates.
void set_sphere_d_geometry(CustomXYZR d, const algebra::Sphere3D &v)
Basic functionality that is expected to be used by a wide variety of IMP users.
Abstract predicate function.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Shared optimizer state that is invoked upon commitment of new coordinates.
void set_check_level(CheckLevel l)
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Abstract single variable functor class for score functions.
double get_distance(const Line3D &s, const Vector3D &p)
Get closest distance between a line and a point.