- r -

• R_factor_score() : IMP::saxs::RadialDistributionFunction
• RadialDistributionFunction() : IMP::saxs::RadialDistributionFunction
• radius_of_gyration() : IMP::saxs::Profile
• RadiusOfGyrationRestraint() : IMP::multifit::RadiusOfGyrationRestraint , IMP::saxs::RadiusOfGyrationRestraint
• randomize_particles() : IMP.test.TestCase
• read() : IMP::em::EMReaderWriter , IMP::em::ImageHeader , IMP::em::MRCReaderWriter , IMP::em::SpiderMapReaderWriter , IMP::em2d::Image , IMP::em2d::RegistrationResult , IMP.isd.TALOSReader.TALOSReader
• read_AMBER_stats() : IMP.isd.Analysis.Analysis
• read_AMBER_variables() : IMP.isd.Analysis.Analysis
• read_data() : IMP::em::EMReaderWriter
• read_from_floats() : IMP::em2d::SpiderImageReaderWriter
• read_from_image() : IMP::em2d::RegistrationResult
• read_from_ints() : IMP::em2d::JPGImageReaderWriter , IMP::em2d::TIFFImageReaderWriter
• read_header() : IMP::em::EMReaderWriter
• read_library_file() : IMP::rotamer::RotamerLibrary
• read_merge_tree() : IMP.em2d.DominoModel.DominoModel
• read_partial_profiles() : IMP::saxs::Profile
• read_SAXS_file() : IMP::saxs::Profile
• read_shell_commands() : IMP.test.ApplicationTestCase
• read_stats() : IMP.isd.Analysis.Analysis
• read_variables() : IMP.isd.Analysis.Analysis
• ReferenceFrame3D() : IMP::algebra::ReferenceFrame3D
• RefinedPairsPairScore() : IMP::core::RefinedPairsPairScore
• reject() : IMP::core::MonteCarloMover
• release() : IMP::base::Pointer< O > , IMP::base::PointerMember< O > , IMP::base::OwnerPointer< O >
• remove() : IMP::base::SparseSymmetricPairMemoizer< Generator, Checker >
• remove_atom() : IMP::atom::CHARMMIdealResidueTopology
• remove_attribute() : IMP::kernel::Model
• remove_data() : IMP::kernel::Model
• remove_particle() : IMP::core::TableRefiner , IMP::kernel::Model
• remove_rigid_motion() : IMP::atom::RemoveRigidMotionOptimizerState
• remove_translation() : IMP::atom::RemoveTranslationOptimizerState
• RemoveRigidMotionOptimizerState() : IMP::atom::RemoveRigidMotionOptimizerState
• RemoveTranslationOptimizerState() : IMP::atom::RemoveTranslationOptimizerState
• resample() : IMP::em::SampledDensityMap , IMP::em::SurfaceShellDensityMap , IMP::saxs::Profile , IMP::saxs::ProfileFitter< ScoringFunctionT >
• rescale_velocities() : IMP::atom::VelocityScalingOptimizerState , IMP::atom::BerendsenThermostatOptimizerState , IMP::atom::LangevinThermostatOptimizerState , IMP.isd.shared_functions.sfo_common
• reset() : IMP::kernel::ScopedSetAttribute< Key, Value > , IMP::kernel::ScopedAddCacheAttribute< Key, Value > , IMP::base::SetLogState , IMP::base::CreateLogContext , IMP::base::SetCheckState , IMP::base::SetNumberOfThreads , IMP::benchmark::Profiler , IMP::kernel::OptimizerState
• reset_acceptance_probabilities() : IMP::core::SerialMover
• reset_data() : IMP::em::DensityMap
• reset_move() : IMP::core::MoverBase , IMP::core::Mover
• reset_moved_particles() : IMP::core::IncrementalScoringFunction
• Restraint() : IMP::kernel::Restraint , IMP::saxs::Restraint
• RestraintScoreSubsetFilterTable() : IMP::domino::RestraintScoreSubsetFilterTable
• RestraintSet() : IMP::kernel::RestraintSet
• retrieve_data() : IMP.em2d.Database.Database2
• RevoluteJoint() : IMP::kinematics::RevoluteJoint
• RigidBodiesImageFitRestraint() : IMP::em2d::RigidBodiesImageFitRestraint
• RigidBodyDistancePairScore() : IMP::core::RigidBodyDistancePairScore
• RigidBodyMover() : IMP::symmetry::RigidBodyMover
• RotamerAngleTuple() : IMP::rotamer::RotamerAngleTuple
• RotamerCalculator() : IMP::rotamer::RotamerCalculator
• RotamerLibrary() : IMP::rotamer::RotamerLibrary
• Rotation2D() : IMP::algebra::Rotation2D
• Rotation3D() : IMP::algebra::Rotation3D
• run() : IMP.restrainer.XMLRestraint , IMP.restrainer.XMLDisplay , IMP.restrainer.XMLRepresentation
• run_application() : IMP.test.ApplicationTestCase
• run_example() : IMP.test.TestCase
• run_monte_carlo() : IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
• run_monte_carlo_with_relative_movers() : IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
• run_python_application() : IMP.test.ApplicationTestCase
• run_python_module() : IMP.test.TestCase
• run_script() : IMP.test.ApplicationTestCase
• run_shell_command() : IMP.test.ApplicationTestCase