RMF
Group.h
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1 /**
2  * \file RMF/HDF5/Group.h
3  * \brief Handle read/write of Model data from/to files.
4  *
5  * Copyright 2007-2022 IMP Inventors. All rights reserved.
6  *
7  */
8 
9 #ifndef RMF_HDF5_GROUP_H
10 #define RMF_HDF5_GROUP_H
11 
12 #include "RMF/config.h"
13 #include "ConstGroup.h"
14 #include "MutableAttributes.h"
15 
16 RMF_ENABLE_WARNINGS
17 
18 namespace RMF {
19 namespace HDF5 {
20 
21 typedef MutableAttributes<ConstGroup> GroupAttributes;
22 #ifndef RMF_DOXYGEN
23 typedef std::vector<GroupAttributes> GroupAttributesList;
24 #endif
25 
26 /** Wrap an HDF5 Group. See
27  \external{https://docs.hdfgroup.org/releases/hdf5/v1_14/v1_14_4/documentation/doxygen/group___h5_g.html,
28  the HDF5 manual} for more information.
29  */
30 class RMFEXPORT Group : public MutableAttributes<ConstGroup> {
32  friend class File;
33  unsigned int get_number_of_links() const {
34  H5G_info_t info;
35  RMF_HDF5_CALL(H5Gget_info(get_handle(), &info));
36  unsigned int n = info.nlinks;
37  return n;
38  }
39 #ifndef SWIG
40  protected:
41  Group(std::shared_ptr<SharedHandle> h);
42 #endif
43  public:
44  Group() {}
45 #if !defined(RMF_DOXYGEN) && !defined(SWIG)
46  static Group get_from_const_group(ConstGroup g) {
47  return Group(g.get_shared_handle());
48  }
49 #endif
50 
51  RMF_SHOWABLE(Group, "Group " << get_name());
52 
53  // create from an existing group
54  Group(Group parent, std::string name);
55  Group add_child_group(std::string name);
56  template <class TypeTraits, unsigned int D>
57  DataSetD<TypeTraits, D> add_child_data_set(std::string name) {
59  return DataSetD<TypeTraits, D>(P::get_shared_handle(), name, props);
60  }
61  template <class TypeTraits, unsigned int D>
62  DataSetD<TypeTraits, D> add_child_data_set(
63  std::string name, DataSetCreationPropertiesD<TypeTraits, D> props) {
64  return DataSetD<TypeTraits, D>(Object::get_shared_handle(), name, props);
65  }
66  template <class TypeTraits, unsigned int D>
67  DataSetD<TypeTraits, D> get_child_data_set(std::string name) const {
69  return DataSetD<TypeTraits, D>(Object::get_shared_handle(), name, props);
70  }
71  template <class TypeTraits, unsigned int D>
72  DataSetD<TypeTraits, D> get_child_data_set(
73  std::string name, DataSetAccessPropertiesD<TypeTraits, D> props) const {
74  return DataSetD<TypeTraits, D>(Object::get_shared_handle(), name, props);
75  }
76 #define RMF_HDF5_DATA_SET_METHODS_D(lcname, UCName, PassValue, ReturnValue, \
77  PassValues, ReturnValues, D) \
78  DataSetD<UCName##Traits, D> get_child_##lcname##_data_set_##D##d( \
79  std::string name, \
80  DataSetAccessPropertiesD<UCName##Traits, D> props) const { \
81  return get_child_data_set<UCName##Traits, D>(name, props); \
82  } \
83  DataSetD<UCName##Traits, D> add_child_##lcname##_data_set_##D##d( \
84  std::string name, DataSetCreationPropertiesD<UCName##Traits, D> props) { \
85  return add_child_data_set<UCName##Traits, D>(name, props); \
86  } \
87  DataSetD<UCName##Traits, D> get_child_##lcname##_data_set_##D##d( \
88  std::string name) const { \
89  DataSetAccessPropertiesD<UCName##Traits, D> props; \
90  return get_child_data_set<UCName##Traits, D>(name, props); \
91  } \
92  DataSetD<UCName##Traits, D> add_child_##lcname##_data_set_##D##d( \
93  std::string name) { \
94  DataSetCreationPropertiesD<UCName##Traits, D> props; \
95  return add_child_data_set<UCName##Traits, D>(name, props); \
96  }
97 
98 #define RMF_HDF5_DATA_SET_METHODS(lcname, UCName, PassValue, ReturnValue, \
99  PassValues, ReturnValues) \
100  RMF_HDF5_DATA_SET_METHODS_D(lcname, UCName, PassValue, ReturnValue, \
101  PassValues, ReturnValues, 1); \
102  RMF_HDF5_DATA_SET_METHODS_D(lcname, UCName, PassValue, ReturnValue, \
103  PassValues, ReturnValues, 2); \
104  RMF_HDF5_DATA_SET_METHODS_D(lcname, UCName, PassValue, ReturnValue, \
105  PassValues, ReturnValues, 3)
106 
107  /** \name Untemplated methods
108  When using Python, you must call the non-templated methods listed
109  below.
110  @{
111  */
112  RMF_HDF5_FOREACH_TYPE(RMF_HDF5_DATA_SET_METHODS);
113  /** @} */
114 
115  Group get_child_group(unsigned int i) const;
116 
117  //! get child group with given name without checks
118  //! - verify group exists using get_has_child()
119  //! and that it's a group using get_child_is_group()
120  Group get_child_group(std::string name) const;
121 };
122 
123 } /* namespace HDF5 */
124 } /* namespace RMF */
125 
126 RMF_DISABLE_WARNINGS
127 
128 #endif /* RMF_HDF5_GROUP_H */
Handle read/write of Model data from/to files.
Handle read/write of Model data from/to files.
#define RMF_HDF5_CALL(v)