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To fix the last problem, I would suggest removing all build and scons
files (if you are building out or source, do "rm -rf .scon* modules
build applications" if you are building in source, then just do "rm
-rf .scons* build" and you are probably OK. Scons gets easily
confused.
On Tue, Feb 21, 2012 at 10:27 AM, Ben Webb <> wrote:
> On 02/21/2012 08:36 AM, Davide BaÅ wrote:
>>
>> On Feb 21, 2012, at 5:23 PM, Ben Webb wrote:
>>>
>>> Is there a reason this machine is years out of date? (The latest
>>> update for RHEL 5 is 5.7.) It seems entirely possible that a bug in
>>> one of the system headers was fixed in the interim.
>>
>> Actually I don't know. I will contact the informatics department to
>> ask if it is possible to update the system (unfortunately we can
>> just "use" the cluster.)
>
>
> You can point them to http://en.wikipedia.org/wiki/RHEL#Version_history
> 5.3 has been obsolete since 5.4 was released in September 2009.
>
>> I got a error on the algebra module: ÂErrors building:
>> build/src/IMP.algebra.py. It's curious that there's a red box on the
>> algebra module on Mac while it compiled with no errors on my Mac.
>
>
> It's a different Mac (32-bit code is built on a 10.4 - Tiger - machine).
> Chances are your machine is more similar to our Snow Leopard 64-bit build
> machine. I've added more descriptive labels to this page, which should show
> up tomorrow.
>
> ...
>>
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:243:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:244:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:245:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:246:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:247:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:248:
>> Error: Template 'GridD' undefined.
>> /project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:249:
>
>
> Odd. The SWIG file should be parsing algebra's GridD.h header, which defines
> that template. But Daniel did make some changes there recently - are you
> sure you don't have a mismatch of versions somewhere (perhaps an older
> version of GridD.h paired with a newer SWIG interface)? I'd suggest a fresh
> checkout to be sure.
>
> Â Â Â ÂBen
> --
> Â Â Â Â Â Â Â Â Â Â Âhttp://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
> Â Â Â Â- Sir Arthur Conan Doyle
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