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Re: [IMP-dev] Compiling IMP on Red Hat



On 02/21/2012 08:36 AM, Davide Baù wrote:
On Feb 21, 2012, at 5:23 PM, Ben Webb wrote:
Is there a reason this machine is years out of date? (The latest
update for RHEL 5 is 5.7.) It seems entirely possible that a bug in
one of the system headers was fixed in the interim.
Actually I don't know. I will contact the informatics department to
ask if it is possible to update the system (unfortunately we can
just "use" the cluster.)
You can point them to http://en.wikipedia.org/wiki/RHEL#Version_history
5.3 has been obsolete since 5.4 was released in September 2009.

I got a error on the algebra module:  Errors building:
build/src/IMP.algebra.py. It's curious that there's a red box on the
algebra module on Mac while it compiled with no errors on my Mac.
It's a different Mac (32-bit code is built on a 10.4 - Tiger - machine). 
Chances are your machine is more similar to our Snow Leopard 64-bit 
build machine. I've added more descriptive labels to this page, which 
should show up tomorrow.
...
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:243:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:244:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:245:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:246:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:247:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:248:
Error: Template 'GridD' undefined.
/project/devel/dbau/imp/imp-r12787/build/swig/IMP_algebra.i:249:
Odd. The SWIG file should be parsing algebra's GridD.h header, which 
defines that template. But Daniel did make some changes there recently - 
are you sure you don't have a mismatch of versions somewhere (perhaps an 
older version of GridD.h paired with a newer SWIG interface)? I'd 
suggest a fresh checkout to be sure.
	Ben
--
ben@salilab.org                      http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle