10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_integrative_docking')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_integrative_docking')
25 _IMP_integrative_docking = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_integrative_docking', [dirname(__file__)])
35 import _IMP_integrative_docking
36 return _IMP_integrative_docking
39 _mod = imp.load_module(
'_IMP_integrative_docking', fp, pathname, description)
43 _IMP_integrative_docking = swig_import_helper()
44 del swig_import_helper
46 import _IMP_integrative_docking
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_INTEGRATIVE_DOCKING_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_INTEGRATIVE_DOCKING_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_integrative_docking.delete_IMP_INTEGRATIVE_DOCKING_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> PyObject *"""
126 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_value(self)
131 incr(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, size_t n=1) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator
132 incr(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator
134 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_incr(self, n)
139 decr(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, size_t n=1) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator
140 decr(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator
142 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, IMP_INTEGRATIVE_DOCKING_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_distance(self, x)
151 """equal(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, IMP_INTEGRATIVE_DOCKING_SwigPyIterator x) -> bool"""
152 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_equal(self, x)
156 """copy(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator"""
157 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_copy(self)
161 """next(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> PyObject *"""
162 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_next(self)
166 """__next__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> PyObject *"""
167 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___next__(self)
171 """previous(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self) -> PyObject *"""
172 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, ptrdiff_t n) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator"""
177 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, IMP_INTEGRATIVE_DOCKING_SwigPyIterator x) -> bool"""
182 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, IMP_INTEGRATIVE_DOCKING_SwigPyIterator x) -> bool"""
187 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, ptrdiff_t n) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator"""
192 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, ptrdiff_t n) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator"""
197 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, ptrdiff_t n) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator"""
202 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, ptrdiff_t n) -> IMP_INTEGRATIVE_DOCKING_SwigPyIterator
208 __sub__(IMP_INTEGRATIVE_DOCKING_SwigPyIterator self, IMP_INTEGRATIVE_DOCKING_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator___sub__(self, *args)
214 IMP_INTEGRATIVE_DOCKING_SwigPyIterator_swigregister = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_SwigPyIterator_swigregister
215 IMP_INTEGRATIVE_DOCKING_SwigPyIterator_swigregister(IMP_INTEGRATIVE_DOCKING_SwigPyIterator)
223 IMP_DEBUG = _IMP_integrative_docking.IMP_DEBUG
224 IMP_RELEASE = _IMP_integrative_docking.IMP_RELEASE
225 IMP_SILENT = _IMP_integrative_docking.IMP_SILENT
226 IMP_PROGRESS = _IMP_integrative_docking.IMP_PROGRESS
227 IMP_TERSE = _IMP_integrative_docking.IMP_TERSE
228 IMP_VERBOSE = _IMP_integrative_docking.IMP_VERBOSE
229 IMP_MEMORY = _IMP_integrative_docking.IMP_MEMORY
230 IMP_NONE = _IMP_integrative_docking.IMP_NONE
231 IMP_USAGE = _IMP_integrative_docking.IMP_USAGE
232 IMP_INTERNAL = _IMP_integrative_docking.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_integrative_docking.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_integrative_docking.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_integrative_docking.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_integrative_docking.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_integrative_docking.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_integrative_docking.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_integrative_docking.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_integrative_docking.IMPKERNEL_SHOW_WARNINGS
244 class _DirectorObjects(object):
245 """@internal Simple class to keep references to director objects
246 to prevent premature deletion."""
249 def register(self, obj):
250 """Take a reference to a director object; will only work for
251 refcounted C++ classes"""
252 if hasattr(obj,
'get_ref_count'):
253 self._objects.append(obj)
255 """Only drop our reference and allow cleanup by Python if no other
256 Python references exist (we hold 3 references: one in self._objects,
257 one in x, and one in the argument list for getrefcount) *and* no
258 other C++ references exist (the Python object always holds one)"""
259 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
260 or x.get_ref_count() > 1]
264 def get_object_count(self):
265 """Get number of director objects (useful for testing only)"""
266 return len(self._objects)
267 _director_objects = _DirectorObjects()
269 class _ostream(object):
270 """Proxy of C++ std::ostream class."""
272 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
274 def __init__(self, *args, **kwargs):
275 raise AttributeError(
"No constructor defined")
276 __repr__ = _swig_repr
278 def write(self, osa_buf):
279 """write(_ostream self, char const * osa_buf)"""
280 return _IMP_integrative_docking._ostream_write(self, osa_buf)
282 _ostream_swigregister = _IMP_integrative_docking._ostream_swigregister
283 _ostream_swigregister(_ostream)
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_integrative_docking.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_integrative_docking.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_integrative_docking.IMP_HAS_NOEXCEPT
288 IMP_C_OPEN_BINARY = _IMP_integrative_docking.IMP_C_OPEN_BINARY
290 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_CGAL_HAS_BOOST_FILESYSTEM
291 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
292 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_CGAL_HAS_BOOST_RANDOM
293 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_CGAL_HAS_BOOST_SYSTEM
294 IMPCGAL_SHOW_WARNINGS = _IMP_integrative_docking.IMPCGAL_SHOW_WARNINGS
296 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_ALGEBRA_HAS_IMP_CGAL
297 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
298 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
299 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_ALGEBRA_HAS_BOOST_RANDOM
300 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_ALGEBRA_HAS_BOOST_SYSTEM
301 IMP_ALGEBRA_HAS_CGAL = _IMP_integrative_docking.IMP_ALGEBRA_HAS_CGAL
302 IMP_ALGEBRA_HAS_ANN = _IMP_integrative_docking.IMP_ALGEBRA_HAS_ANN
303 IMPALGEBRA_SHOW_WARNINGS = _IMP_integrative_docking.IMPALGEBRA_SHOW_WARNINGS
305 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_DISPLAY_HAS_IMP_CGAL
306 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
307 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
308 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_DISPLAY_HAS_BOOST_RANDOM
309 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_DISPLAY_HAS_BOOST_SYSTEM
310 IMP_DISPLAY_HAS_CGAL = _IMP_integrative_docking.IMP_DISPLAY_HAS_CGAL
311 IMPDISPLAY_SHOW_WARNINGS = _IMP_integrative_docking.IMPDISPLAY_SHOW_WARNINGS
313 IMP_GSL_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_GSL_HAS_IMP_CGAL
314 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_GSL_HAS_BOOST_FILESYSTEM
315 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
316 IMP_GSL_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_GSL_HAS_BOOST_RANDOM
317 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_GSL_HAS_BOOST_SYSTEM
318 IMP_GSL_HAS_CGAL = _IMP_integrative_docking.IMP_GSL_HAS_CGAL
319 IMPGSL_SHOW_WARNINGS = _IMP_integrative_docking.IMPGSL_SHOW_WARNINGS
321 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
322 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
323 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
324 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
325 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
326 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_CGAL
327 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_integrative_docking.IMP_SCORE_FUNCTOR_HAS_HDF5
328 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_integrative_docking.IMPSCOREFUNCTOR_SHOW_WARNINGS
330 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_STATISTICS_HAS_IMP_CGAL
331 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
332 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
333 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_STATISTICS_HAS_BOOST_RANDOM
334 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_STATISTICS_HAS_BOOST_SYSTEM
335 IMP_STATISTICS_HAS_CGAL = _IMP_integrative_docking.IMP_STATISTICS_HAS_CGAL
336 IMPSTATISTICS_SHOW_WARNINGS = _IMP_integrative_docking.IMPSTATISTICS_SHOW_WARNINGS
338 IMP_CORE_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_CORE_HAS_IMP_CGAL
339 IMP_CORE_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_CORE_HAS_IMP_KERNEL
340 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_CORE_HAS_BOOST_FILESYSTEM
341 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
342 IMP_CORE_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_CORE_HAS_BOOST_RANDOM
343 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_CORE_HAS_BOOST_SYSTEM
344 IMP_CORE_HAS_CGAL = _IMP_integrative_docking.IMP_CORE_HAS_CGAL
345 IMP_CORE_HAS_HDF5 = _IMP_integrative_docking.IMP_CORE_HAS_HDF5
346 IMPCORE_SHOW_WARNINGS = _IMP_integrative_docking.IMPCORE_SHOW_WARNINGS
348 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_integrative_docking.IMP_CONTAINER_HAS_IMP_ALGEBRA
349 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_CONTAINER_HAS_IMP_CGAL
350 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_integrative_docking.IMP_CONTAINER_HAS_IMP_DISPLAY
351 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_CONTAINER_HAS_IMP_KERNEL
352 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
353 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
354 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
355 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_CONTAINER_HAS_BOOST_RANDOM
356 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_CONTAINER_HAS_BOOST_SYSTEM
357 IMP_CONTAINER_HAS_CGAL = _IMP_integrative_docking.IMP_CONTAINER_HAS_CGAL
358 IMP_CONTAINER_HAS_HDF5 = _IMP_integrative_docking.IMP_CONTAINER_HAS_HDF5
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_integrative_docking.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_integrative_docking.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_integrative_docking.IMPCONTAINER_SHOW_WARNINGS
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_integrative_docking.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_integrative_docking.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_ATOM_HAS_PYTHON_IHM
374 IMPATOM_SHOW_WARNINGS = _IMP_integrative_docking.IMPATOM_SHOW_WARNINGS
375 IMP_ATOM_TYPE_INDEX = _IMP_integrative_docking.IMP_ATOM_TYPE_INDEX
376 IMP_RESIDUE_TYPE_INDEX = _IMP_integrative_docking.IMP_RESIDUE_TYPE_INDEX
377 IMP_HIERARCHY_TYPE_INDEX = _IMP_integrative_docking.IMP_HIERARCHY_TYPE_INDEX
378 IMP_CHAIN_TYPE_INDEX = _IMP_integrative_docking.IMP_CHAIN_TYPE_INDEX
380 IMP_EM_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_EM_HAS_IMP_CGAL
381 IMP_EM_HAS_IMP_CONTAINER = _IMP_integrative_docking.IMP_EM_HAS_IMP_CONTAINER
382 IMP_EM_HAS_IMP_DISPLAY = _IMP_integrative_docking.IMP_EM_HAS_IMP_DISPLAY
383 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_EM_HAS_IMP_SCORE_FUNCTOR
384 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_EM_HAS_BOOST_FILESYSTEM
385 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
386 IMP_EM_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_EM_HAS_BOOST_RANDOM
387 IMP_EM_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_EM_HAS_BOOST_REGEX
388 IMP_EM_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_EM_HAS_BOOST_SYSTEM
389 IMP_EM_HAS_CGAL = _IMP_integrative_docking.IMP_EM_HAS_CGAL
390 IMP_EM_HAS_HDF5 = _IMP_integrative_docking.IMP_EM_HAS_HDF5
391 IMP_EM_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_EM_HAS_PYTHON_IHM
392 IMPEM_SHOW_WARNINGS = _IMP_integrative_docking.IMPEM_SHOW_WARNINGS
394 IMP_RMF_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_RMF_HAS_IMP_CGAL
395 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
396 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_RMF_HAS_BOOST_FILESYSTEM
397 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
398 IMP_RMF_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_RMF_HAS_BOOST_RANDOM
399 IMP_RMF_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_RMF_HAS_BOOST_REGEX
400 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_RMF_HAS_BOOST_SYSTEM
401 IMP_RMF_HAS_CGAL = _IMP_integrative_docking.IMP_RMF_HAS_CGAL
402 IMP_RMF_HAS_HDF5 = _IMP_integrative_docking.IMP_RMF_HAS_HDF5
403 IMP_RMF_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_RMF_HAS_PYTHON_IHM
404 IMPRMF_SHOW_WARNINGS = _IMP_integrative_docking.IMPRMF_SHOW_WARNINGS
407 IMP_SAXS_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_SAXS_HAS_IMP_CGAL
408 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_integrative_docking.IMP_SAXS_HAS_IMP_CONTAINER
409 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_integrative_docking.IMP_SAXS_HAS_IMP_DISPLAY
410 IMP_SAXS_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_SAXS_HAS_IMP_KERNEL
411 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
412 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_SAXS_HAS_BOOST_FILESYSTEM
413 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
414 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_SAXS_HAS_BOOST_RANDOM
415 IMP_SAXS_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_SAXS_HAS_BOOST_REGEX
416 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_SAXS_HAS_BOOST_SYSTEM
417 IMP_SAXS_HAS_CGAL = _IMP_integrative_docking.IMP_SAXS_HAS_CGAL
418 IMP_SAXS_HAS_HDF5 = _IMP_integrative_docking.IMP_SAXS_HAS_HDF5
419 IMP_SAXS_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_SAXS_HAS_PYTHON_IHM
420 IMPSAXS_SHOW_WARNINGS = _IMP_integrative_docking.IMPSAXS_SHOW_WARNINGS
422 IMP_DOMINO_HAS_IMP_ATOM = _IMP_integrative_docking.IMP_DOMINO_HAS_IMP_ATOM
423 IMP_DOMINO_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_DOMINO_HAS_IMP_CGAL
424 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_DOMINO_HAS_IMP_KERNEL
425 IMP_DOMINO_HAS_IMP_RMF = _IMP_integrative_docking.IMP_DOMINO_HAS_IMP_RMF
426 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
427 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_DOMINO_HAS_BOOST_FILESYSTEM
428 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_integrative_docking.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
429 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_DOMINO_HAS_BOOST_RANDOM
430 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_DOMINO_HAS_BOOST_REGEX
431 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_DOMINO_HAS_BOOST_SYSTEM
432 IMP_DOMINO_HAS_CGAL = _IMP_integrative_docking.IMP_DOMINO_HAS_CGAL
433 IMP_DOMINO_HAS_HDF5 = _IMP_integrative_docking.IMP_DOMINO_HAS_HDF5
434 IMP_DOMINO_HAS_RMF = _IMP_integrative_docking.IMP_DOMINO_HAS_RMF
435 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_DOMINO_HAS_PYTHON_IHM
436 IMPDOMINO_SHOW_WARNINGS = _IMP_integrative_docking.IMPDOMINO_SHOW_WARNINGS
439 IMP_EM2D_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_EM2D_HAS_IMP_CGAL
440 IMP_EM2D_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_EM2D_HAS_IMP_KERNEL
441 IMP_EM2D_HAS_IMP_RMF = _IMP_integrative_docking.IMP_EM2D_HAS_IMP_RMF
442 IMP_EM2D_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_EM2D_HAS_IMP_SCORE_FUNCTOR
443 IMP_EM2D_HAS_IMP_STATISTICS = _IMP_integrative_docking.IMP_EM2D_HAS_IMP_STATISTICS
444 IMP_EM2D_HAS_BOOST_GRAPH = _IMP_integrative_docking.IMP_EM2D_HAS_BOOST_GRAPH
445 IMP_EM2D_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_EM2D_HAS_BOOST_RANDOM
446 IMP_EM2D_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_EM2D_HAS_BOOST_REGEX
447 IMP_EM2D_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_EM2D_HAS_BOOST_SYSTEM
448 IMP_EM2D_HAS_CGAL = _IMP_integrative_docking.IMP_EM2D_HAS_CGAL
449 IMP_EM2D_HAS_GSL = _IMP_integrative_docking.IMP_EM2D_HAS_GSL
450 IMP_EM2D_HAS_HDF5 = _IMP_integrative_docking.IMP_EM2D_HAS_HDF5
451 IMP_EM2D_HAS_OPENCV22 = _IMP_integrative_docking.IMP_EM2D_HAS_OPENCV22
452 IMP_EM2D_HAS_RMF = _IMP_integrative_docking.IMP_EM2D_HAS_RMF
453 IMP_EM2D_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_EM2D_HAS_PYTHON_IHM
454 IMP_EM2D_HAS_OPENCV21 = _IMP_integrative_docking.IMP_EM2D_HAS_OPENCV21
455 IMP_EM2D_HAS_OPENCV3 = _IMP_integrative_docking.IMP_EM2D_HAS_OPENCV3
456 IMPEM2D_SHOW_WARNINGS = _IMP_integrative_docking.IMPEM2D_SHOW_WARNINGS
458 IMP_INTEGRATIVE_DOCKING_HAS_IMP_ALGEBRA = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_ALGEBRA
459 IMP_INTEGRATIVE_DOCKING_HAS_IMP_ATOM = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_ATOM
460 IMP_INTEGRATIVE_DOCKING_HAS_IMP_CGAL = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_CGAL
461 IMP_INTEGRATIVE_DOCKING_HAS_IMP_CONTAINER = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_CONTAINER
462 IMP_INTEGRATIVE_DOCKING_HAS_IMP_CORE = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_CORE
463 IMP_INTEGRATIVE_DOCKING_HAS_IMP_DISPLAY = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_DISPLAY
464 IMP_INTEGRATIVE_DOCKING_HAS_IMP_DOMINO = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_DOMINO
465 IMP_INTEGRATIVE_DOCKING_HAS_IMP_GSL = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_GSL
466 IMP_INTEGRATIVE_DOCKING_HAS_IMP_KERNEL = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_KERNEL
467 IMP_INTEGRATIVE_DOCKING_HAS_IMP_RMF = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_RMF
468 IMP_INTEGRATIVE_DOCKING_HAS_IMP_SCORE_FUNCTOR = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_SCORE_FUNCTOR
469 IMP_INTEGRATIVE_DOCKING_HAS_IMP_STATISTICS = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_IMP_STATISTICS
470 IMP_INTEGRATIVE_DOCKING_HAS_BOOST_FILESYSTEM = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_BOOST_FILESYSTEM
471 IMP_INTEGRATIVE_DOCKING_HAS_BOOST_GRAPH = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_BOOST_GRAPH
472 IMP_INTEGRATIVE_DOCKING_HAS_BOOST_RANDOM = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_BOOST_RANDOM
473 IMP_INTEGRATIVE_DOCKING_HAS_BOOST_REGEX = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_BOOST_REGEX
474 IMP_INTEGRATIVE_DOCKING_HAS_BOOST_SYSTEM = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_BOOST_SYSTEM
475 IMP_INTEGRATIVE_DOCKING_HAS_CGAL = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_CGAL
476 IMP_INTEGRATIVE_DOCKING_HAS_FFTW3 = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_FFTW3
477 IMP_INTEGRATIVE_DOCKING_HAS_GSL = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_GSL
478 IMP_INTEGRATIVE_DOCKING_HAS_HDF5 = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_HDF5
479 IMP_INTEGRATIVE_DOCKING_HAS_OPENCV22 = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_OPENCV22
480 IMP_INTEGRATIVE_DOCKING_HAS_RMF = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_RMF
481 IMP_INTEGRATIVE_DOCKING_HAS_PYTHON_IHM = _IMP_integrative_docking.IMP_INTEGRATIVE_DOCKING_HAS_PYTHON_IHM
482 IMPINTEGRATIVEDOCKING_SHOW_WARNINGS = _IMP_integrative_docking.IMPINTEGRATIVEDOCKING_SHOW_WARNINGS
484 def get_module_version():
485 """get_module_version() -> std::string const"""
486 return _IMP_integrative_docking.get_module_version()
489 """get_example_path(std::string fname) -> std::string"""
490 return _IMP_integrative_docking.get_example_path(fname)
493 """get_data_path(std::string fname) -> std::string"""
494 return _IMP_integrative_docking.get_data_path(fname)
496 from .
import _version_check
497 _version_check.check_version(get_module_version())
498 __version__ = get_module_version()
Restraints using electron microscopy 2D images (class averages).
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Several general purpose optimizers from the GNU Scientific Library (GSL).
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Basic utilities for handling cryo-electron microscopy 3D density maps.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.
Support for small angle X-ray scattering (SAXS) data.