anchor_utilities.h File Reference

Common functions in anchor calculations. More...

#include <IMP/multifit/multifit_config.h>
#include <IMP/atom/Hierarchy.h>
#include <IMP/statistics/internal/VQClustering.h>
#include <IMP/statistics/internal/DataPoints.h>
#include "DataPointsAssignment.h"
#include "anchors_reader.h"

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Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::multifit
	Fitting atomic structures into a cryo-electron microscopy density map.

Functions
IntsList	IMP::multifit::get_anchor_indices_matching_secondary_structure (const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
	Get lists of anchors that match a sequence of secondary structures. More...
void	IMP::multifit::get_anchors_for_density (em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
	Generate anchors in several formats for a given density map. More...
AnchorsData	IMP::multifit::molecule2anchors (atom::Hierarchy mh, int k)

Detailed Description

Common functions in anchor calculations.

Copyright 2007-2018 IMP Inventors. All rights reserved.

Definition in file anchor_utilities.h.