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IMP Reference Guide  2.9.0
The Integrative Modeling Platform
EMageFit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2018 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_EMageFit')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_EMageFit')
25  _IMP_EMageFit = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_EMageFit', [dirname(__file__)])
34  except ImportError:
35  import _IMP_EMageFit
36  return _IMP_EMageFit
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_EMageFit', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_EMageFit = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_EMageFit
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_EMAGEFIT_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_EMAGEFIT_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_EMageFit.delete_IMP_EMAGEFIT_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
126  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
132  incr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
133  """
134  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
140  decr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
141  """
142  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
152  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator"""
157  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
162  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
167  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
172  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
177  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
182  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
187  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
192  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
197  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
202  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator
208  __sub__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_EMAGEFIT_SwigPyIterator_swigregister = _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_swigregister
215 IMP_EMAGEFIT_SwigPyIterator_swigregister(IMP_EMAGEFIT_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_EMageFit.IMP_DEBUG
224 IMP_RELEASE = _IMP_EMageFit.IMP_RELEASE
225 IMP_SILENT = _IMP_EMageFit.IMP_SILENT
226 IMP_PROGRESS = _IMP_EMageFit.IMP_PROGRESS
227 IMP_TERSE = _IMP_EMageFit.IMP_TERSE
228 IMP_VERBOSE = _IMP_EMageFit.IMP_VERBOSE
229 IMP_MEMORY = _IMP_EMageFit.IMP_MEMORY
230 IMP_NONE = _IMP_EMageFit.IMP_NONE
231 IMP_USAGE = _IMP_EMageFit.IMP_USAGE
232 IMP_INTERNAL = _IMP_EMageFit.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_EMageFit.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_EMageFit.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_EMageFit.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_EMageFit.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_EMageFit.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_EMageFit.IMPKERNEL_SHOW_WARNINGS
242 
243 import sys
244 class _DirectorObjects(object):
245  """@internal Simple class to keep references to director objects
246  to prevent premature deletion."""
247  def __init__(self):
248  self._objects = []
249  def register(self, obj):
250  """Take a reference to a director object; will only work for
251  refcounted C++ classes"""
252  if hasattr(obj, 'get_ref_count'):
253  self._objects.append(obj)
254  def cleanup(self):
255  """Only drop our reference and allow cleanup by Python if no other
256  Python references exist (we hold 3 references: one in self._objects,
257  one in x, and one in the argument list for getrefcount) *and* no
258  other C++ references exist (the Python object always holds one)"""
259  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
260  or x.get_ref_count() > 1]
261 # Do in two steps so the references are kept until the end of the
262 # function (deleting references may trigger a fresh call to this method)
263  self._objects = objs
264  def get_object_count(self):
265  """Get number of director objects (useful for testing only)"""
266  return len(self._objects)
267 _director_objects = _DirectorObjects()
268 
269 class _ostream(object):
270  """Proxy of C++ std::ostream class."""
271 
272  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
273 
274  def __init__(self, *args, **kwargs):
275  raise AttributeError("No constructor defined")
276  __repr__ = _swig_repr
277 
278  def write(self, osa_buf):
279  """write(_ostream self, char const * osa_buf)"""
280  return _IMP_EMageFit._ostream_write(self, osa_buf)
281 
282 _ostream_swigregister = _IMP_EMageFit._ostream_swigregister
283 _ostream_swigregister(_ostream)
284 
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_EMageFit.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_EMageFit.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_EMageFit.IMP_HAS_NOEXCEPT
288 IMP_C_OPEN_BINARY = _IMP_EMageFit.IMP_C_OPEN_BINARY
289 import IMP
290 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_FILESYSTEM
291 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
292 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_RANDOM
293 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_SYSTEM
294 IMPCGAL_SHOW_WARNINGS = _IMP_EMageFit.IMPCGAL_SHOW_WARNINGS
295 import IMP.cgal
296 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_IMP_CGAL
297 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
298 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
299 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_RANDOM
300 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
301 IMP_ALGEBRA_HAS_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_CGAL
302 IMP_ALGEBRA_HAS_ANN = _IMP_EMageFit.IMP_ALGEBRA_HAS_ANN
303 IMPALGEBRA_SHOW_WARNINGS = _IMP_EMageFit.IMPALGEBRA_SHOW_WARNINGS
304 import IMP.algebra
305 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_IMP_CGAL
306 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
307 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
308 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_RANDOM
309 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_SYSTEM
310 IMP_DISPLAY_HAS_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_CGAL
311 IMPDISPLAY_SHOW_WARNINGS = _IMP_EMageFit.IMPDISPLAY_SHOW_WARNINGS
312 import IMP.display
313 IMP_GSL_HAS_IMP_CGAL = _IMP_EMageFit.IMP_GSL_HAS_IMP_CGAL
314 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_FILESYSTEM
315 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
316 IMP_GSL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_RANDOM
317 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_SYSTEM
318 IMP_GSL_HAS_CGAL = _IMP_EMageFit.IMP_GSL_HAS_CGAL
319 IMPGSL_SHOW_WARNINGS = _IMP_EMageFit.IMPGSL_SHOW_WARNINGS
320 import IMP.gsl
321 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
322 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
323 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
324 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
325 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
326 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_CGAL
327 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_HDF5
328 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_EMageFit.IMPSCOREFUNCTOR_SHOW_WARNINGS
329 import IMP.score_functor
330 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_IMP_CGAL
331 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
332 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
333 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_RANDOM
334 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_SYSTEM
335 IMP_STATISTICS_HAS_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_CGAL
336 IMPSTATISTICS_SHOW_WARNINGS = _IMP_EMageFit.IMPSTATISTICS_SHOW_WARNINGS
337 import IMP.statistics
338 IMP_CORE_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CORE_HAS_IMP_CGAL
339 IMP_CORE_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CORE_HAS_IMP_KERNEL
340 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_FILESYSTEM
341 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
342 IMP_CORE_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_RANDOM
343 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_SYSTEM
344 IMP_CORE_HAS_CGAL = _IMP_EMageFit.IMP_CORE_HAS_CGAL
345 IMP_CORE_HAS_HDF5 = _IMP_EMageFit.IMP_CORE_HAS_HDF5
346 IMPCORE_SHOW_WARNINGS = _IMP_EMageFit.IMPCORE_SHOW_WARNINGS
347 import IMP.core
348 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_ALGEBRA
349 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_CGAL
350 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_DISPLAY
351 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_KERNEL
352 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
353 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
354 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
355 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_RANDOM
356 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_SYSTEM
357 IMP_CONTAINER_HAS_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_CGAL
358 IMP_CONTAINER_HAS_HDF5 = _IMP_EMageFit.IMP_CONTAINER_HAS_HDF5
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_EMageFit.IMPCONTAINER_SHOW_WARNINGS
363 import IMP.container
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_EMageFit.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_ATOM_HAS_PYTHON_IHM
374 IMPATOM_SHOW_WARNINGS = _IMP_EMageFit.IMPATOM_SHOW_WARNINGS
375 IMP_ATOM_TYPE_INDEX = _IMP_EMageFit.IMP_ATOM_TYPE_INDEX
376 IMP_RESIDUE_TYPE_INDEX = _IMP_EMageFit.IMP_RESIDUE_TYPE_INDEX
377 IMP_HIERARCHY_TYPE_INDEX = _IMP_EMageFit.IMP_HIERARCHY_TYPE_INDEX
378 IMP_CHAIN_TYPE_INDEX = _IMP_EMageFit.IMP_CHAIN_TYPE_INDEX
379 import IMP.atom
380 IMP_EM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM_HAS_IMP_CGAL
381 IMP_EM_HAS_IMP_CONTAINER = _IMP_EMageFit.IMP_EM_HAS_IMP_CONTAINER
382 IMP_EM_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_EM_HAS_IMP_DISPLAY
383 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
384 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_FILESYSTEM
385 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
386 IMP_EM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM_HAS_BOOST_RANDOM
387 IMP_EM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM_HAS_BOOST_REGEX
388 IMP_EM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_SYSTEM
389 IMP_EM_HAS_CGAL = _IMP_EMageFit.IMP_EM_HAS_CGAL
390 IMP_EM_HAS_HDF5 = _IMP_EMageFit.IMP_EM_HAS_HDF5
391 IMP_EM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM_HAS_PYTHON_IHM
392 IMPEM_SHOW_WARNINGS = _IMP_EMageFit.IMPEM_SHOW_WARNINGS
393 import IMP.em
394 IMP_RMF_HAS_IMP_CGAL = _IMP_EMageFit.IMP_RMF_HAS_IMP_CGAL
395 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
396 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_FILESYSTEM
397 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
398 IMP_RMF_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_RANDOM
399 IMP_RMF_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_RMF_HAS_BOOST_REGEX
400 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_SYSTEM
401 IMP_RMF_HAS_CGAL = _IMP_EMageFit.IMP_RMF_HAS_CGAL
402 IMP_RMF_HAS_HDF5 = _IMP_EMageFit.IMP_RMF_HAS_HDF5
403 IMP_RMF_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_RMF_HAS_PYTHON_IHM
404 IMPRMF_SHOW_WARNINGS = _IMP_EMageFit.IMPRMF_SHOW_WARNINGS
405 import IMP.rmf
406 import RMF
407 IMP_DOMINO_HAS_IMP_ATOM = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_ATOM
408 IMP_DOMINO_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_CGAL
409 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_KERNEL
410 IMP_DOMINO_HAS_IMP_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_RMF
411 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
412 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
413 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
414 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_RANDOM
415 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_REGEX
416 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_SYSTEM
417 IMP_DOMINO_HAS_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_CGAL
418 IMP_DOMINO_HAS_HDF5 = _IMP_EMageFit.IMP_DOMINO_HAS_HDF5
419 IMP_DOMINO_HAS_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_RMF
420 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_DOMINO_HAS_PYTHON_IHM
421 IMPDOMINO_SHOW_WARNINGS = _IMP_EMageFit.IMPDOMINO_SHOW_WARNINGS
422 import RMF_HDF5
423 import IMP.domino
424 IMP_EM2D_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_CGAL
425 IMP_EM2D_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_KERNEL
426 IMP_EM2D_HAS_IMP_RMF = _IMP_EMageFit.IMP_EM2D_HAS_IMP_RMF
427 IMP_EM2D_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM2D_HAS_IMP_SCORE_FUNCTOR
428 IMP_EM2D_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EM2D_HAS_IMP_STATISTICS
429 IMP_EM2D_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_GRAPH
430 IMP_EM2D_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_RANDOM
431 IMP_EM2D_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_REGEX
432 IMP_EM2D_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_SYSTEM
433 IMP_EM2D_HAS_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_CGAL
434 IMP_EM2D_HAS_GSL = _IMP_EMageFit.IMP_EM2D_HAS_GSL
435 IMP_EM2D_HAS_HDF5 = _IMP_EMageFit.IMP_EM2D_HAS_HDF5
436 IMP_EM2D_HAS_OPENCV22 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV22
437 IMP_EM2D_HAS_RMF = _IMP_EMageFit.IMP_EM2D_HAS_RMF
438 IMP_EM2D_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM2D_HAS_PYTHON_IHM
439 IMP_EM2D_HAS_OPENCV21 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV21
440 IMP_EM2D_HAS_OPENCV3 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV3
441 IMPEM2D_SHOW_WARNINGS = _IMP_EMageFit.IMPEM2D_SHOW_WARNINGS
442 import IMP.em2d
443 IMP_EMAGEFIT_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_CGAL
444 IMP_EMAGEFIT_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_KERNEL
445 IMP_EMAGEFIT_HAS_IMP_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_RMF
446 IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR
447 IMP_EMAGEFIT_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_STATISTICS
448 IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM
449 IMP_EMAGEFIT_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_GRAPH
450 IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS
451 IMP_EMAGEFIT_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_RANDOM
452 IMP_EMAGEFIT_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_REGEX
453 IMP_EMAGEFIT_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_SYSTEM
454 IMP_EMAGEFIT_HAS_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_CGAL
455 IMP_EMAGEFIT_HAS_FFTW3 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_FFTW3
456 IMP_EMAGEFIT_HAS_GSL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_GSL
457 IMP_EMAGEFIT_HAS_HDF5 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_HDF5
458 IMP_EMAGEFIT_HAS_OPENCV22 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_OPENCV22
459 IMP_EMAGEFIT_HAS_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_RMF
460 IMP_EMAGEFIT_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_PYTHON_IHM
461 IMPEMAGEFIT_SHOW_WARNINGS = _IMP_EMageFit.IMPEMAGEFIT_SHOW_WARNINGS
462 
463 def get_module_version():
464  """get_module_version() -> std::string const"""
465  return _IMP_EMageFit.get_module_version()
466 
467 def get_example_path(fname):
468  """get_example_path(std::string fname) -> std::string"""
469  return _IMP_EMageFit.get_example_path(fname)
470 
471 def get_data_path(fname):
472  """get_data_path(std::string fname) -> std::string"""
473  return _IMP_EMageFit.get_data_path(fname)
474 
475 from . import _version_check
476 _version_check.check_version(get_module_version())
477 __version__ = get_module_version()
478 
479 
480 
Restraints using electron microscopy 2D images (class averages).
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Several general purpose optimizers from the GNU Scientific Library (GSL).
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Basic utilities for handling cryo-electron microscopy 3D density maps.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.