10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_EMageFit')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_EMageFit')
25 _IMP_EMageFit = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_EMageFit', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_EMageFit', fp, pathname, description)
43 _IMP_EMageFit = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_EMAGEFIT_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_EMAGEFIT_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_EMageFit.delete_IMP_EMAGEFIT_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
126 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_value(self)
131 incr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
132 incr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
134 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_incr(self, n)
139 decr(IMP_EMAGEFIT_SwigPyIterator self, size_t n=1) -> IMP_EMAGEFIT_SwigPyIterator
140 decr(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator
142 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_distance(self, x)
151 """equal(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
152 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_equal(self, x)
156 """copy(IMP_EMAGEFIT_SwigPyIterator self) -> IMP_EMAGEFIT_SwigPyIterator"""
157 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_copy(self)
161 """next(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
162 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_next(self)
166 """__next__(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
167 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___next__(self)
171 """previous(IMP_EMAGEFIT_SwigPyIterator self) -> PyObject *"""
172 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
177 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
182 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> bool"""
187 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
192 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
197 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator"""
202 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_EMAGEFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_EMAGEFIT_SwigPyIterator
208 __sub__(IMP_EMAGEFIT_SwigPyIterator self, IMP_EMAGEFIT_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator___sub__(self, *args)
214 IMP_EMAGEFIT_SwigPyIterator_swigregister = _IMP_EMageFit.IMP_EMAGEFIT_SwigPyIterator_swigregister
215 IMP_EMAGEFIT_SwigPyIterator_swigregister(IMP_EMAGEFIT_SwigPyIterator)
223 IMP_DEBUG = _IMP_EMageFit.IMP_DEBUG
224 IMP_RELEASE = _IMP_EMageFit.IMP_RELEASE
225 IMP_SILENT = _IMP_EMageFit.IMP_SILENT
226 IMP_PROGRESS = _IMP_EMageFit.IMP_PROGRESS
227 IMP_TERSE = _IMP_EMageFit.IMP_TERSE
228 IMP_VERBOSE = _IMP_EMageFit.IMP_VERBOSE
229 IMP_MEMORY = _IMP_EMageFit.IMP_MEMORY
230 IMP_NONE = _IMP_EMageFit.IMP_NONE
231 IMP_USAGE = _IMP_EMageFit.IMP_USAGE
232 IMP_INTERNAL = _IMP_EMageFit.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_EMageFit.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_EMageFit.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_EMageFit.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_EMageFit.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_EMageFit.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_EMageFit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_EMageFit.IMPKERNEL_SHOW_WARNINGS
244 class _DirectorObjects(object):
245 """@internal Simple class to keep references to director objects
246 to prevent premature deletion."""
249 def register(self, obj):
250 """Take a reference to a director object; will only work for
251 refcounted C++ classes"""
252 if hasattr(obj,
'get_ref_count'):
253 self._objects.append(obj)
255 """Only drop our reference and allow cleanup by Python if no other
256 Python references exist (we hold 3 references: one in self._objects,
257 one in x, and one in the argument list for getrefcount) *and* no
258 other C++ references exist (the Python object always holds one)"""
259 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
260 or x.get_ref_count() > 1]
264 def get_object_count(self):
265 """Get number of director objects (useful for testing only)"""
266 return len(self._objects)
267 _director_objects = _DirectorObjects()
269 class _ostream(object):
270 """Proxy of C++ std::ostream class."""
272 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
274 def __init__(self, *args, **kwargs):
275 raise AttributeError(
"No constructor defined")
276 __repr__ = _swig_repr
278 def write(self, osa_buf):
279 """write(_ostream self, char const * osa_buf)"""
280 return _IMP_EMageFit._ostream_write(self, osa_buf)
282 _ostream_swigregister = _IMP_EMageFit._ostream_swigregister
283 _ostream_swigregister(_ostream)
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_EMageFit.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_EMageFit.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_EMageFit.IMP_HAS_NOEXCEPT
288 IMP_C_OPEN_BINARY = _IMP_EMageFit.IMP_C_OPEN_BINARY
290 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_FILESYSTEM
291 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
292 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_RANDOM
293 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CGAL_HAS_BOOST_SYSTEM
294 IMPCGAL_SHOW_WARNINGS = _IMP_EMageFit.IMPCGAL_SHOW_WARNINGS
296 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_IMP_CGAL
297 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
298 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
299 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_RANDOM
300 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
301 IMP_ALGEBRA_HAS_CGAL = _IMP_EMageFit.IMP_ALGEBRA_HAS_CGAL
302 IMP_ALGEBRA_HAS_ANN = _IMP_EMageFit.IMP_ALGEBRA_HAS_ANN
303 IMPALGEBRA_SHOW_WARNINGS = _IMP_EMageFit.IMPALGEBRA_SHOW_WARNINGS
305 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_IMP_CGAL
306 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
307 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
308 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_RANDOM
309 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DISPLAY_HAS_BOOST_SYSTEM
310 IMP_DISPLAY_HAS_CGAL = _IMP_EMageFit.IMP_DISPLAY_HAS_CGAL
311 IMPDISPLAY_SHOW_WARNINGS = _IMP_EMageFit.IMPDISPLAY_SHOW_WARNINGS
313 IMP_GSL_HAS_IMP_CGAL = _IMP_EMageFit.IMP_GSL_HAS_IMP_CGAL
314 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_FILESYSTEM
315 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
316 IMP_GSL_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_RANDOM
317 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_GSL_HAS_BOOST_SYSTEM
318 IMP_GSL_HAS_CGAL = _IMP_EMageFit.IMP_GSL_HAS_CGAL
319 IMPGSL_SHOW_WARNINGS = _IMP_EMageFit.IMPGSL_SHOW_WARNINGS
321 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
322 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
323 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
324 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
325 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
326 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_CGAL
327 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_EMageFit.IMP_SCORE_FUNCTOR_HAS_HDF5
328 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_EMageFit.IMPSCOREFUNCTOR_SHOW_WARNINGS
330 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_IMP_CGAL
331 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
332 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
333 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_RANDOM
334 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_STATISTICS_HAS_BOOST_SYSTEM
335 IMP_STATISTICS_HAS_CGAL = _IMP_EMageFit.IMP_STATISTICS_HAS_CGAL
336 IMPSTATISTICS_SHOW_WARNINGS = _IMP_EMageFit.IMPSTATISTICS_SHOW_WARNINGS
338 IMP_CORE_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CORE_HAS_IMP_CGAL
339 IMP_CORE_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CORE_HAS_IMP_KERNEL
340 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_FILESYSTEM
341 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
342 IMP_CORE_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_RANDOM
343 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CORE_HAS_BOOST_SYSTEM
344 IMP_CORE_HAS_CGAL = _IMP_EMageFit.IMP_CORE_HAS_CGAL
345 IMP_CORE_HAS_HDF5 = _IMP_EMageFit.IMP_CORE_HAS_HDF5
346 IMPCORE_SHOW_WARNINGS = _IMP_EMageFit.IMPCORE_SHOW_WARNINGS
348 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_ALGEBRA
349 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_CGAL
350 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_DISPLAY
351 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_KERNEL
352 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
353 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
354 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
355 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_RANDOM
356 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_CONTAINER_HAS_BOOST_SYSTEM
357 IMP_CONTAINER_HAS_CGAL = _IMP_EMageFit.IMP_CONTAINER_HAS_CGAL
358 IMP_CONTAINER_HAS_HDF5 = _IMP_EMageFit.IMP_CONTAINER_HAS_HDF5
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_EMageFit.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_EMageFit.IMPCONTAINER_SHOW_WARNINGS
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_EMageFit.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_EMageFit.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_ATOM_HAS_PYTHON_IHM
374 IMPATOM_SHOW_WARNINGS = _IMP_EMageFit.IMPATOM_SHOW_WARNINGS
375 IMP_ATOM_TYPE_INDEX = _IMP_EMageFit.IMP_ATOM_TYPE_INDEX
376 IMP_RESIDUE_TYPE_INDEX = _IMP_EMageFit.IMP_RESIDUE_TYPE_INDEX
377 IMP_HIERARCHY_TYPE_INDEX = _IMP_EMageFit.IMP_HIERARCHY_TYPE_INDEX
378 IMP_CHAIN_TYPE_INDEX = _IMP_EMageFit.IMP_CHAIN_TYPE_INDEX
380 IMP_EM_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM_HAS_IMP_CGAL
381 IMP_EM_HAS_IMP_CONTAINER = _IMP_EMageFit.IMP_EM_HAS_IMP_CONTAINER
382 IMP_EM_HAS_IMP_DISPLAY = _IMP_EMageFit.IMP_EM_HAS_IMP_DISPLAY
383 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
384 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_FILESYSTEM
385 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
386 IMP_EM_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM_HAS_BOOST_RANDOM
387 IMP_EM_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM_HAS_BOOST_REGEX
388 IMP_EM_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM_HAS_BOOST_SYSTEM
389 IMP_EM_HAS_CGAL = _IMP_EMageFit.IMP_EM_HAS_CGAL
390 IMP_EM_HAS_HDF5 = _IMP_EMageFit.IMP_EM_HAS_HDF5
391 IMP_EM_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM_HAS_PYTHON_IHM
392 IMPEM_SHOW_WARNINGS = _IMP_EMageFit.IMPEM_SHOW_WARNINGS
394 IMP_RMF_HAS_IMP_CGAL = _IMP_EMageFit.IMP_RMF_HAS_IMP_CGAL
395 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
396 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_FILESYSTEM
397 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
398 IMP_RMF_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_RANDOM
399 IMP_RMF_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_RMF_HAS_BOOST_REGEX
400 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_RMF_HAS_BOOST_SYSTEM
401 IMP_RMF_HAS_CGAL = _IMP_EMageFit.IMP_RMF_HAS_CGAL
402 IMP_RMF_HAS_HDF5 = _IMP_EMageFit.IMP_RMF_HAS_HDF5
403 IMP_RMF_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_RMF_HAS_PYTHON_IHM
404 IMPRMF_SHOW_WARNINGS = _IMP_EMageFit.IMPRMF_SHOW_WARNINGS
407 IMP_DOMINO_HAS_IMP_ATOM = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_ATOM
408 IMP_DOMINO_HAS_IMP_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_CGAL
409 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_KERNEL
410 IMP_DOMINO_HAS_IMP_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_RMF
411 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
412 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
413 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
414 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_RANDOM
415 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_REGEX
416 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_DOMINO_HAS_BOOST_SYSTEM
417 IMP_DOMINO_HAS_CGAL = _IMP_EMageFit.IMP_DOMINO_HAS_CGAL
418 IMP_DOMINO_HAS_HDF5 = _IMP_EMageFit.IMP_DOMINO_HAS_HDF5
419 IMP_DOMINO_HAS_RMF = _IMP_EMageFit.IMP_DOMINO_HAS_RMF
420 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_DOMINO_HAS_PYTHON_IHM
421 IMPDOMINO_SHOW_WARNINGS = _IMP_EMageFit.IMPDOMINO_SHOW_WARNINGS
424 IMP_EM2D_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_CGAL
425 IMP_EM2D_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EM2D_HAS_IMP_KERNEL
426 IMP_EM2D_HAS_IMP_RMF = _IMP_EMageFit.IMP_EM2D_HAS_IMP_RMF
427 IMP_EM2D_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EM2D_HAS_IMP_SCORE_FUNCTOR
428 IMP_EM2D_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EM2D_HAS_IMP_STATISTICS
429 IMP_EM2D_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_GRAPH
430 IMP_EM2D_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_RANDOM
431 IMP_EM2D_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_REGEX
432 IMP_EM2D_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EM2D_HAS_BOOST_SYSTEM
433 IMP_EM2D_HAS_CGAL = _IMP_EMageFit.IMP_EM2D_HAS_CGAL
434 IMP_EM2D_HAS_GSL = _IMP_EMageFit.IMP_EM2D_HAS_GSL
435 IMP_EM2D_HAS_HDF5 = _IMP_EMageFit.IMP_EM2D_HAS_HDF5
436 IMP_EM2D_HAS_OPENCV22 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV22
437 IMP_EM2D_HAS_RMF = _IMP_EMageFit.IMP_EM2D_HAS_RMF
438 IMP_EM2D_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EM2D_HAS_PYTHON_IHM
439 IMP_EM2D_HAS_OPENCV21 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV21
440 IMP_EM2D_HAS_OPENCV3 = _IMP_EMageFit.IMP_EM2D_HAS_OPENCV3
441 IMPEM2D_SHOW_WARNINGS = _IMP_EMageFit.IMPEM2D_SHOW_WARNINGS
443 IMP_EMAGEFIT_HAS_IMP_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_CGAL
444 IMP_EMAGEFIT_HAS_IMP_KERNEL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_KERNEL
445 IMP_EMAGEFIT_HAS_IMP_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_RMF
446 IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_SCORE_FUNCTOR
447 IMP_EMAGEFIT_HAS_IMP_STATISTICS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_IMP_STATISTICS
448 IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_FILESYSTEM
449 IMP_EMAGEFIT_HAS_BOOST_GRAPH = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_GRAPH
450 IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_PROGRAMOPTIONS
451 IMP_EMAGEFIT_HAS_BOOST_RANDOM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_RANDOM
452 IMP_EMAGEFIT_HAS_BOOST_REGEX = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_REGEX
453 IMP_EMAGEFIT_HAS_BOOST_SYSTEM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_BOOST_SYSTEM
454 IMP_EMAGEFIT_HAS_CGAL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_CGAL
455 IMP_EMAGEFIT_HAS_FFTW3 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_FFTW3
456 IMP_EMAGEFIT_HAS_GSL = _IMP_EMageFit.IMP_EMAGEFIT_HAS_GSL
457 IMP_EMAGEFIT_HAS_HDF5 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_HDF5
458 IMP_EMAGEFIT_HAS_OPENCV22 = _IMP_EMageFit.IMP_EMAGEFIT_HAS_OPENCV22
459 IMP_EMAGEFIT_HAS_RMF = _IMP_EMageFit.IMP_EMAGEFIT_HAS_RMF
460 IMP_EMAGEFIT_HAS_PYTHON_IHM = _IMP_EMageFit.IMP_EMAGEFIT_HAS_PYTHON_IHM
461 IMPEMAGEFIT_SHOW_WARNINGS = _IMP_EMageFit.IMPEMAGEFIT_SHOW_WARNINGS
463 def get_module_version():
464 """get_module_version() -> std::string const"""
465 return _IMP_EMageFit.get_module_version()
468 """get_example_path(std::string fname) -> std::string"""
469 return _IMP_EMageFit.get_example_path(fname)
472 """get_data_path(std::string fname) -> std::string"""
473 return _IMP_EMageFit.get_data_path(fname)
475 from .
import _version_check
476 _version_check.check_version(get_module_version())
477 __version__ = get_module_version()
Restraints using electron microscopy 2D images (class averages).
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Several general purpose optimizers from the GNU Scientific Library (GSL).
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Basic utilities for handling cryo-electron microscopy 3D density maps.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.