protein_anchors_mapping_reader.h File Reference

handles reading matches between a protein and its anchors More...

#include <IMP/multifit/multifit_config.h>
#include <IMP/multifit/anchors_reader.h>
#include <IMP/domino/DominoSampler.h>
#include <IMP/multifit/SettingsData.h>
#include <IMP/multifit/proteomics_reader.h>

Include dependency graph for protein_anchors_mapping_reader.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	IMP::multifit::ProteinsAnchorsSamplingSpace
	stores the anchors sampling space for each protein More...

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::multifit
	Fitting atomic structures into a cryo-electron microscopy density map.

Typedefs
typedef IMP::Vector < ProteinsAnchorsSamplingSpace >	IMP::multifit::ProteinsAnchorsSamplingSpaces

Functions
ProteinsAnchorsSamplingSpace	IMP::multifit::get_part_of_sampling_space (const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
	Get the sampling space of few of the proteins. More...
multifit::SettingsData *	IMP::multifit::get_partial_assembly_setting_data (multifit::SettingsData *prots_sd, const Strings &prot_names)
	Get the assembly data for a few of the proteins. More...
ProteinsAnchorsSamplingSpace	IMP::multifit::read_protein_anchors_mapping (multifit::ProteomicsData *prots, const std::string &anchors_prot_map_fn, int max_paths=INT_MAX)
void	IMP::multifit::write_protein_anchors_mapping (const std::string &anchors_prot_map_fn, const std::string &anchors_fn, const std::vector< std::pair< String, String > > &prot_paths)
void	IMP::multifit::write_protein_anchors_mapping (const std::string &anchors_prot_map_fn, const ProteinsAnchorsSamplingSpace &pa, const Strings &prot_names)

Detailed Description

handles reading matches between a protein and its anchors

Copyright 2007-2017 IMP Inventors. All rights reserved.

Definition in file protein_anchors_mapping_reader.h.