pmi/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 3.0.10
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

# This wrapper is part of IMP,
# Copyright 2007-2017 IMP Inventors. All rights reserved.

from __future__ import print_function, division, absolute_import




from sys import version_info as _swig_python_version_info
if _swig_python_version_info >= (2, 7, 0):
    def swig_import_helper():
        import importlib
        pkg = __name__.rpartition('.')[0]
        mname = '.'.join((pkg, '_IMP_pmi')).lstrip('.')
        try:
            return importlib.import_module(mname)
        except ImportError:
            return importlib.import_module('_IMP_pmi')
    _IMP_pmi = swig_import_helper()
    del swig_import_helper
elif _swig_python_version_info >= (2, 6, 0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_pmi', [dirname(__file__)])
        except ImportError:
            import _IMP_pmi
            return _IMP_pmi
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_pmi', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_pmi = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_pmi
del _swig_python_version_info
try:
    _swig_property = property
except NameError:
    pass  # Python < 2.2 doesn't have 'property'.

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
    if (name == "thisown"):
        return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name, None)
    if method:
        return method(self, value)
    if (not static):
        object.__setattr__(self, name, value)
    else:
        raise AttributeError("You cannot add attributes to %s" % self)


def _swig_setattr(self, class_type, name, value):
    return _swig_setattr_nondynamic(self, class_type, name, value, 0)


def _swig_getattr(self, class_type, name):
    if (name == "thisown"):
        return self.this.own()
    method = class_type.__swig_getmethods__.get(name, None)
    if method:
        return method(self)
    raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))


def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)


def _swig_setattr_nondynamic_method(set):
    def set_attr(self, name, value):
        if (name == "thisown"):
            return self.this.own(value)
        if hasattr(self, name) or (name == "this"):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add attributes to %s" % self)
    return set_attr


try:
    import weakref
    weakref_proxy = weakref.proxy
except __builtin__.Exception:
    weakref_proxy = lambda x: x


class IMP_PMI_SwigPyIterator(object):
    """Proxy of C++ swig::IMP_PMI_SwigPyIterator class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_pmi.delete_IMP_PMI_SwigPyIterator
    __del__ = lambda self: None

    def value(self):
        """value(IMP_PMI_SwigPyIterator self) -> PyObject *"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_value(self)


    def incr(self, n=1):
        """
        incr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
        incr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
        """
        return _IMP_pmi.IMP_PMI_SwigPyIterator_incr(self, n)


    def decr(self, n=1):
        """
        decr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
        decr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
        """
        return _IMP_pmi.IMP_PMI_SwigPyIterator_decr(self, n)


    def distance(self, x):
        """distance(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_distance(self, x)


    def equal(self, x):
        """equal(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_equal(self, x)


    def copy(self):
        """copy(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_copy(self)


    def next(self):
        """next(IMP_PMI_SwigPyIterator self) -> PyObject *"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_next(self)


    def __next__(self):
        """__next__(IMP_PMI_SwigPyIterator self) -> PyObject *"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___next__(self)


    def previous(self):
        """previous(IMP_PMI_SwigPyIterator self) -> PyObject *"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_previous(self)


    def advance(self, n):
        """advance(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator_advance(self, n)


    def __eq__(self, x):
        """__eq__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___eq__(self, x)


    def __ne__(self, x):
        """__ne__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___ne__(self, x)


    def __iadd__(self, n):
        """__iadd__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___iadd__(self, n)


    def __isub__(self, n):
        """__isub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___isub__(self, n)


    def __add__(self, n):
        """__add__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
        return _IMP_pmi.IMP_PMI_SwigPyIterator___add__(self, n)


    def __sub__(self, *args):
        """
        __sub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator
        __sub__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_pmi.IMP_PMI_SwigPyIterator___sub__(self, *args)

    def __iter__(self):
        return self
IMP_PMI_SwigPyIterator_swigregister = _IMP_pmi.IMP_PMI_SwigPyIterator_swigregister
IMP_PMI_SwigPyIterator_swigregister(IMP_PMI_SwigPyIterator)


_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_pmi.IMP_DEBUG
IMP_RELEASE = _IMP_pmi.IMP_RELEASE
IMP_SILENT = _IMP_pmi.IMP_SILENT
IMP_PROGRESS = _IMP_pmi.IMP_PROGRESS
IMP_TERSE = _IMP_pmi.IMP_TERSE
IMP_VERBOSE = _IMP_pmi.IMP_VERBOSE
IMP_MEMORY = _IMP_pmi.IMP_MEMORY
IMP_NONE = _IMP_pmi.IMP_NONE
IMP_USAGE = _IMP_pmi.IMP_USAGE
IMP_INTERNAL = _IMP_pmi.IMP_INTERNAL
IMP_KERNEL_HAS_LOG4CXX = _IMP_pmi.IMP_KERNEL_HAS_LOG4CXX
IMP_COMPILER_HAS_AUTO = _IMP_pmi.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pmi.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pmi.IMP_COMPILER_HAS_UNIQUE_PTR
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pmi.IMP_KERNEL_HAS_GPERFTOOLS
IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
IMPKERNEL_SHOW_WARNINGS = _IMP_pmi.IMPKERNEL_SHOW_WARNINGS

import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    """Proxy of C++ std::ostream class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_pmi._ostream_write(self, osa_buf)

_ostream_swigregister = _IMP_pmi._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_pmi.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_pmi.IMP_COMPILER_HAS_FINAL
IMP_HAS_NOEXCEPT = _IMP_pmi.IMP_HAS_NOEXCEPT
import IMP
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_SYSTEM
IMPCGAL_SHOW_WARNINGS = _IMP_pmi.IMPCGAL_SHOW_WARNINGS
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_ANN = _IMP_pmi.IMP_ALGEBRA_HAS_ANN
IMPALGEBRA_SHOW_WARNINGS = _IMP_pmi.IMPALGEBRA_SHOW_WARNINGS
import IMP.algebra
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_IMP_CGAL
IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_RANDOM
IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_SYSTEM
IMP_DISPLAY_HAS_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_CGAL
IMPDISPLAY_SHOW_WARNINGS = _IMP_pmi.IMPDISPLAY_SHOW_WARNINGS
import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_CGAL
IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_HDF5
IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pmi.IMPSCOREFUNCTOR_SHOW_WARNINGS
import IMP.score_functor
IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_IMP_CGAL
IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_RANDOM
IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_SYSTEM
IMP_STATISTICS_HAS_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_CGAL
IMPSTATISTICS_SHOW_WARNINGS = _IMP_pmi.IMPSTATISTICS_SHOW_WARNINGS
import IMP.statistics
IMP_CORE_HAS_IMP_CGAL = _IMP_pmi.IMP_CORE_HAS_IMP_CGAL
IMP_CORE_HAS_IMP_KERNEL = _IMP_pmi.IMP_CORE_HAS_IMP_KERNEL
IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_FILESYSTEM
IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
IMP_CORE_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CORE_HAS_BOOST_RANDOM
IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_SYSTEM
IMP_CORE_HAS_CGAL = _IMP_pmi.IMP_CORE_HAS_CGAL
IMP_CORE_HAS_HDF5 = _IMP_pmi.IMP_CORE_HAS_HDF5
IMPCORE_SHOW_WARNINGS = _IMP_pmi.IMPCORE_SHOW_WARNINGS
import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_CONTAINER_HAS_IMP_ALGEBRA
IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_CGAL
IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pmi.IMP_CONTAINER_HAS_IMP_DISPLAY
IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_KERNEL
IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_RANDOM
IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_SYSTEM
IMP_CONTAINER_HAS_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_CGAL
IMP_CONTAINER_HAS_HDF5 = _IMP_pmi.IMP_CONTAINER_HAS_HDF5
IMPCONTAINER_SHOW_WARNINGS = _IMP_pmi.IMPCONTAINER_SHOW_WARNINGS
import IMP.container
IMP_ATOM_HAS_IMP_CGAL = _IMP_pmi.IMP_ATOM_HAS_IMP_CGAL
IMP_ATOM_HAS_IMP_KERNEL = _IMP_pmi.IMP_ATOM_HAS_IMP_KERNEL
IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ATOM_HAS_BOOST_RANDOM
IMP_ATOM_HAS_BOOST_REGEX = _IMP_pmi.IMP_ATOM_HAS_BOOST_REGEX
IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ATOM_HAS_BOOST_SYSTEM
IMP_ATOM_HAS_CGAL = _IMP_pmi.IMP_ATOM_HAS_CGAL
IMP_ATOM_HAS_HDF5 = _IMP_pmi.IMP_ATOM_HAS_HDF5
IMPATOM_SHOW_WARNINGS = _IMP_pmi.IMPATOM_SHOW_WARNINGS
IMP_ATOM_TYPE_INDEX = _IMP_pmi.IMP_ATOM_TYPE_INDEX
IMP_RESIDUE_TYPE_INDEX = _IMP_pmi.IMP_RESIDUE_TYPE_INDEX
IMP_HIERARCHY_TYPE_INDEX = _IMP_pmi.IMP_HIERARCHY_TYPE_INDEX
import IMP.atom
IMP_EM_HAS_IMP_CGAL = _IMP_pmi.IMP_EM_HAS_IMP_CGAL
IMP_EM_HAS_IMP_CONTAINER = _IMP_pmi.IMP_EM_HAS_IMP_CONTAINER
IMP_EM_HAS_IMP_DISPLAY = _IMP_pmi.IMP_EM_HAS_IMP_DISPLAY
IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_EM_HAS_IMP_SCORE_FUNCTOR
IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_FILESYSTEM
IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
IMP_EM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_EM_HAS_BOOST_RANDOM
IMP_EM_HAS_BOOST_REGEX = _IMP_pmi.IMP_EM_HAS_BOOST_REGEX
IMP_EM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_SYSTEM
IMP_EM_HAS_CGAL = _IMP_pmi.IMP_EM_HAS_CGAL
IMP_EM_HAS_HDF5 = _IMP_pmi.IMP_EM_HAS_HDF5
IMPEM_SHOW_WARNINGS = _IMP_pmi.IMPEM_SHOW_WARNINGS
import IMP.em
IMP_SAXS_HAS_IMP_CGAL = _IMP_pmi.IMP_SAXS_HAS_IMP_CGAL
IMP_SAXS_HAS_IMP_CONTAINER = _IMP_pmi.IMP_SAXS_HAS_IMP_CONTAINER
IMP_SAXS_HAS_IMP_DISPLAY = _IMP_pmi.IMP_SAXS_HAS_IMP_DISPLAY
IMP_SAXS_HAS_IMP_KERNEL = _IMP_pmi.IMP_SAXS_HAS_IMP_KERNEL
IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_FILESYSTEM
IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
IMP_SAXS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SAXS_HAS_BOOST_RANDOM
IMP_SAXS_HAS_BOOST_REGEX = _IMP_pmi.IMP_SAXS_HAS_BOOST_REGEX
IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_SYSTEM
IMP_SAXS_HAS_CGAL = _IMP_pmi.IMP_SAXS_HAS_CGAL
IMP_SAXS_HAS_HDF5 = _IMP_pmi.IMP_SAXS_HAS_HDF5
IMPSAXS_SHOW_WARNINGS = _IMP_pmi.IMPSAXS_SHOW_WARNINGS
import IMP.saxs
IMP_ISD_HAS_IMP_CGAL = _IMP_pmi.IMP_ISD_HAS_IMP_CGAL
IMP_ISD_HAS_IMP_DISPLAY = _IMP_pmi.IMP_ISD_HAS_IMP_DISPLAY
IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_FILESYSTEM
IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
IMP_ISD_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ISD_HAS_BOOST_RANDOM
IMP_ISD_HAS_BOOST_REGEX = _IMP_pmi.IMP_ISD_HAS_BOOST_REGEX
IMP_ISD_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_SYSTEM
IMP_ISD_HAS_CGAL = _IMP_pmi.IMP_ISD_HAS_CGAL
IMP_ISD_HAS_HDF5 = _IMP_pmi.IMP_ISD_HAS_HDF5
IMPISD_SHOW_WARNINGS = _IMP_pmi.IMPISD_SHOW_WARNINGS
import IMP.isd
IMP_PMI_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_PMI_HAS_IMP_ALGEBRA
IMP_PMI_HAS_IMP_ATOM = _IMP_pmi.IMP_PMI_HAS_IMP_ATOM
IMP_PMI_HAS_IMP_CGAL = _IMP_pmi.IMP_PMI_HAS_IMP_CGAL
IMP_PMI_HAS_IMP_DISPLAY = _IMP_pmi.IMP_PMI_HAS_IMP_DISPLAY
IMP_PMI_HAS_IMP_EM = _IMP_pmi.IMP_PMI_HAS_IMP_EM
IMP_PMI_HAS_IMP_KERNEL = _IMP_pmi.IMP_PMI_HAS_IMP_KERNEL
IMP_PMI_HAS_IMP_SAXS = _IMP_pmi.IMP_PMI_HAS_IMP_SAXS
IMP_PMI_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_PMI_HAS_IMP_SCORE_FUNCTOR
IMP_PMI_HAS_IMP_STATISTICS = _IMP_pmi.IMP_PMI_HAS_IMP_STATISTICS
IMP_PMI_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_FILESYSTEM
IMP_PMI_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_PMI_HAS_BOOST_PROGRAMOPTIONS
IMP_PMI_HAS_BOOST_RANDOM = _IMP_pmi.IMP_PMI_HAS_BOOST_RANDOM
IMP_PMI_HAS_BOOST_REGEX = _IMP_pmi.IMP_PMI_HAS_BOOST_REGEX
IMP_PMI_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_SYSTEM
IMP_PMI_HAS_CGAL = _IMP_pmi.IMP_PMI_HAS_CGAL
IMP_PMI_HAS_HDF5 = _IMP_pmi.IMP_PMI_HAS_HDF5
IMPPMI_SHOW_WARNINGS = _IMP_pmi.IMPPMI_SHOW_WARNINGS

_object_types.append("CompositeRestraint")


def _object_cast_to_CompositeRestraint(o):
    """_object_cast_to_CompositeRestraint(Object o) -> CompositeRestraint"""
    return _IMP_pmi._object_cast_to_CompositeRestraint(o)

def Uncertainties(l=[]):
    return [Uncertainty(x) for x in l]
_plural_types.append("Uncertainties")


_value_types.append("Uncertainty")


def Resolutions(l=[]):
    return [Resolution(x) for x in l]
_plural_types.append("Resolutions")


_value_types.append("Resolution")


def Symmetrics(l=[]):
    return [Symmetric(x) for x in l]
_plural_types.append("Symmetrics")


_value_types.append("Symmetric")


_object_types.append("SigmoidRestraintSphere")


def _object_cast_to_SigmoidRestraintSphere(o):
    """_object_cast_to_SigmoidRestraintSphere(Object o) -> SigmoidRestraintSphere"""
    return _IMP_pmi._object_cast_to_SigmoidRestraintSphere(o)

_object_types.append("TransformMover")


def _object_cast_to_TransformMover(o):
    """_object_cast_to_TransformMover(Object o) -> TransformMover"""
    return _IMP_pmi._object_cast_to_TransformMover(o)

_object_types.append("MembraneRestraint")


def _object_cast_to_MembraneRestraint(o):
    """_object_cast_to_MembraneRestraint(Object o) -> MembraneRestraint"""
    return _IMP_pmi._object_cast_to_MembraneRestraint(o)

_object_types.append("InternalCoordinatesConstraint")


def _object_cast_to_InternalCoordinatesConstraint(o):
    """_object_cast_to_InternalCoordinatesConstraint(Object o) -> InternalCoordinatesConstraint"""
    return _IMP_pmi._object_cast_to_InternalCoordinatesConstraint(o)
class MembraneRestraint(IMP.isd.ISDRestraint):
    """Proxy of C++ IMP::pmi::MembraneRestraint class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, m, z_nuisance, thickness, softness, plateau, linear):
        """__init__(IMP::pmi::MembraneRestraint self, Model m, ParticleIndex z_nuisance, double thickness, double softness, double plateau, double linear) -> MembraneRestraint"""
        this = _IMP_pmi.new_MembraneRestraint(m, z_nuisance, thickness, softness, plateau, linear)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def add_particles_below(self, particles):
        """add_particles_below(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
        return _IMP_pmi.MembraneRestraint_add_particles_below(self, particles)


    def add_particles_above(self, particles):
        """add_particles_above(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
        return _IMP_pmi.MembraneRestraint_add_particles_above(self, particles)


    def add_particles_inside(self, particles):
        """add_particles_inside(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
        return _IMP_pmi.MembraneRestraint_add_particles_inside(self, particles)


    def get_score(self, prob):
        """get_score(MembraneRestraint self, double prob) -> double"""
        return _IMP_pmi.MembraneRestraint_get_score(self, prob)


    def get_probability_above(self, z, z_slope_center_upper):
        """get_probability_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
        return _IMP_pmi.MembraneRestraint_get_probability_above(self, z, z_slope_center_upper)


    def get_score_above(self, z, z_slope_center_upper):
        """get_score_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
        return _IMP_pmi.MembraneRestraint_get_score_above(self, z, z_slope_center_upper)


    def get_probability_below(self, z, z_slope_center_lower):
        """get_probability_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
        return _IMP_pmi.MembraneRestraint_get_probability_below(self, z, z_slope_center_lower)


    def get_score_below(self, z, z_slope_center_lower):
        """get_score_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
        return _IMP_pmi.MembraneRestraint_get_score_below(self, z, z_slope_center_lower)


    def get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper):
        """get_score_inside(MembraneRestraint self, double z, double z_slope_center_lower, double z_slope_center_upper) -> double"""
        return _IMP_pmi.MembraneRestraint_get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper)


    def __str__(self):
        """__str__(MembraneRestraint self) -> std::string"""
        return _IMP_pmi.MembraneRestraint___str__(self)


    def __repr__(self):
        """__repr__(MembraneRestraint self) -> std::string"""
        return _IMP_pmi.MembraneRestraint___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_MembraneRestraint(o)

MembraneRestraint_swigregister = _IMP_pmi.MembraneRestraint_swigregister
MembraneRestraint_swigregister(MembraneRestraint)

class CompositeRestraint(IMP.Restraint):
    """Proxy of C++ IMP::pmi::CompositeRestraint class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args):
        """
        __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau, std::string name) -> CompositeRestraint
        __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau) -> CompositeRestraint
        """
        this = _IMP_pmi.new_CompositeRestraint(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def add_composite_particle(self, pi):
        """add_composite_particle(CompositeRestraint self, _ParticleIndexesAdaptor pi)"""
        return _IMP_pmi.CompositeRestraint_add_composite_particle(self, pi)


    def get_number_of_elements(self):
        """get_number_of_elements(CompositeRestraint self) -> unsigned int"""
        return _IMP_pmi.CompositeRestraint_get_number_of_elements(self)


    def do_get_inputs(self):
        """do_get_inputs(CompositeRestraint self) -> IMP::ModelObjectsTemp"""
        return _IMP_pmi.CompositeRestraint_do_get_inputs(self)


    def get_version_info(self):
        """get_version_info(CompositeRestraint self) -> VersionInfo"""
        return _IMP_pmi.CompositeRestraint_get_version_info(self)


    def get_probability(self):
        """get_probability(CompositeRestraint self) -> double"""
        return _IMP_pmi.CompositeRestraint_get_probability(self)


    def __str__(self):
        """__str__(CompositeRestraint self) -> std::string"""
        return _IMP_pmi.CompositeRestraint___str__(self)


    def __repr__(self):
        """__repr__(CompositeRestraint self) -> std::string"""
        return _IMP_pmi.CompositeRestraint___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_CompositeRestraint(o)

CompositeRestraint_swigregister = _IMP_pmi.CompositeRestraint_swigregister
CompositeRestraint_swigregister(CompositeRestraint)

class Uncertainty(IMP.Decorator):
    """Proxy of C++ IMP::pmi::Uncertainty class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def get_uncertainty(self):
        """get_uncertainty(Uncertainty self) -> IMP::Float"""
        return _IMP_pmi.Uncertainty_get_uncertainty(self)


    def set_uncertainty(self, d):
        """set_uncertainty(Uncertainty self, IMP::Float d)"""
        return _IMP_pmi.Uncertainty_set_uncertainty(self, d)


    def __init__(self, *args):
        """
        __init__(IMP::pmi::Uncertainty self) -> Uncertainty
        __init__(IMP::pmi::Uncertainty self, Model m, ParticleIndex id) -> Uncertainty
        __init__(IMP::pmi::Uncertainty self, _ParticleAdaptor d) -> Uncertainty
        """
        this = _IMP_pmi.new_Uncertainty(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_is_setup(*args):
        """
        get_is_setup(Model m, ParticleIndex pi) -> bool
        get_is_setup(_ParticleAdaptor p) -> bool
        """
        return _IMP_pmi.Uncertainty_get_is_setup(*args)

    get_is_setup = staticmethod(get_is_setup)

    def show(self, *args):
        """
        show(Uncertainty self, _ostream out)
        show(Uncertainty self)
        """
        return _IMP_pmi.Uncertainty_show(self, *args)


    def setup_particle(*args):
        """
        setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
        setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
        """
        return _IMP_pmi.Uncertainty_setup_particle(*args)

    setup_particle = staticmethod(setup_particle)

    def get_uncertainty_key():
        """get_uncertainty_key() -> FloatKey"""
        return _IMP_pmi.Uncertainty_get_uncertainty_key()

    get_uncertainty_key = staticmethod(get_uncertainty_key)

    def add_attribute(self, *args):
        """
        add_attribute(Uncertainty self, FloatKey k, IMP::Float v, bool opt)
        add_attribute(Uncertainty self, FloatKey a0, IMP::Float a1)
        add_attribute(Uncertainty self, IntKey a0, IMP::Int a1)
        add_attribute(Uncertainty self, StringKey a0, IMP::String a1)
        add_attribute(Uncertainty self, ParticleIndexKey a0, Particle a1)
        add_attribute(Uncertainty self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Uncertainty_add_attribute(self, *args)


    def get_value(self, *args):
        """
        get_value(Uncertainty self, FloatKey a0) -> IMP::Float
        get_value(Uncertainty self, IntKey a0) -> IMP::Int
        get_value(Uncertainty self, StringKey a0) -> IMP::String
        get_value(Uncertainty self, ParticleIndexKey a0) -> Particle
        get_value(Uncertainty self, ObjectKey a0) -> Object
        """
        return _IMP_pmi.Uncertainty_get_value(self, *args)


    def set_value(self, *args):
        """
        set_value(Uncertainty self, FloatKey a0, IMP::Float a1)
        set_value(Uncertainty self, IntKey a0, IMP::Int a1)
        set_value(Uncertainty self, StringKey a0, IMP::String a1)
        set_value(Uncertainty self, ParticleIndexKey a0, Particle a1)
        set_value(Uncertainty self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Uncertainty_set_value(self, *args)


    def remove_attribute(self, *args):
        """
        remove_attribute(Uncertainty self, FloatKey a0)
        remove_attribute(Uncertainty self, IntKey a0)
        remove_attribute(Uncertainty self, StringKey a0)
        remove_attribute(Uncertainty self, ParticleIndexKey a0)
        remove_attribute(Uncertainty self, ObjectKey a0)
        """
        return _IMP_pmi.Uncertainty_remove_attribute(self, *args)


    def has_attribute(self, *args):
        """
        has_attribute(Uncertainty self, FloatKey a0) -> bool
        has_attribute(Uncertainty self, IntKey a0) -> bool
        has_attribute(Uncertainty self, StringKey a0) -> bool
        has_attribute(Uncertainty self, ParticleIndexKey a0) -> bool
        has_attribute(Uncertainty self, ObjectKey a0) -> bool
        """
        return _IMP_pmi.Uncertainty_has_attribute(self, *args)


    def get_derivative(self, a0):
        """get_derivative(Uncertainty self, FloatKey a0) -> double"""
        return _IMP_pmi.Uncertainty_get_derivative(self, a0)


    def get_name(self):
        """get_name(Uncertainty self) -> std::string"""
        return _IMP_pmi.Uncertainty_get_name(self)


    def clear_caches(self):
        """clear_caches(Uncertainty self)"""
        return _IMP_pmi.Uncertainty_clear_caches(self)


    def set_name(self, a0):
        """set_name(Uncertainty self, std::string a0)"""
        return _IMP_pmi.Uncertainty_set_name(self, a0)


    def set_check_level(self, a0):
        """set_check_level(Uncertainty self, IMP::CheckLevel a0)"""
        return _IMP_pmi.Uncertainty_set_check_level(self, a0)


    def add_to_derivative(self, a0, a1, a2):
        """add_to_derivative(Uncertainty self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
        return _IMP_pmi.Uncertainty_add_to_derivative(self, a0, a1, a2)


    def set_is_optimized(self, a0, a1):
        """set_is_optimized(Uncertainty self, FloatKey a0, bool a1)"""
        return _IMP_pmi.Uncertainty_set_is_optimized(self, a0, a1)


    def get_is_optimized(self, a0):
        """get_is_optimized(Uncertainty self, FloatKey a0) -> bool"""
        return _IMP_pmi.Uncertainty_get_is_optimized(self, a0)


    def get_check_level(self):
        """get_check_level(Uncertainty self) -> IMP::CheckLevel"""
        return _IMP_pmi.Uncertainty_get_check_level(self)


    def __eq__(self, *args):
        """
        __eq__(Uncertainty self, Uncertainty o) -> bool
        __eq__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___eq__(self, *args)


    def __ne__(self, *args):
        """
        __ne__(Uncertainty self, Uncertainty o) -> bool
        __ne__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___ne__(self, *args)


    def __le__(self, *args):
        """
        __le__(Uncertainty self, Uncertainty o) -> bool
        __le__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___le__(self, *args)


    def __lt__(self, *args):
        """
        __lt__(Uncertainty self, Uncertainty o) -> bool
        __lt__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___lt__(self, *args)


    def __ge__(self, *args):
        """
        __ge__(Uncertainty self, Uncertainty o) -> bool
        __ge__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___ge__(self, *args)


    def __gt__(self, *args):
        """
        __gt__(Uncertainty self, Uncertainty o) -> bool
        __gt__(Uncertainty self, Particle d) -> bool
        """
        return _IMP_pmi.Uncertainty___gt__(self, *args)


    def __hash__(self):
        """__hash__(Uncertainty self) -> std::size_t"""
        return _IMP_pmi.Uncertainty___hash__(self)


    def __str__(self):
        """__str__(Uncertainty self) -> std::string"""
        return _IMP_pmi.Uncertainty___str__(self)


    def __repr__(self):
        """__repr__(Uncertainty self) -> std::string"""
        return _IMP_pmi.Uncertainty___repr__(self)

    __swig_destroy__ = _IMP_pmi.delete_Uncertainty
    __del__ = lambda self: None
Uncertainty_swigregister = _IMP_pmi.Uncertainty_swigregister
Uncertainty_swigregister(Uncertainty)

def Uncertainty_get_is_setup(*args):
    """
    get_is_setup(Model m, ParticleIndex pi) -> bool
    Uncertainty_get_is_setup(_ParticleAdaptor p) -> bool
    """
    return _IMP_pmi.Uncertainty_get_is_setup(*args)

def Uncertainty_setup_particle(*args):
    """
    setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
    Uncertainty_setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
    """
    return _IMP_pmi.Uncertainty_setup_particle(*args)

def Uncertainty_get_uncertainty_key():
    """Uncertainty_get_uncertainty_key() -> FloatKey"""
    return _IMP_pmi.Uncertainty_get_uncertainty_key()

class Resolution(IMP.Decorator):
    """Proxy of C++ IMP::pmi::Resolution class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def get_resolution(self):
        """get_resolution(Resolution self) -> IMP::Float"""
        return _IMP_pmi.Resolution_get_resolution(self)


    def set_resolution(self, d):
        """set_resolution(Resolution self, IMP::Float d)"""
        return _IMP_pmi.Resolution_set_resolution(self, d)


    def __init__(self, *args):
        """
        __init__(IMP::pmi::Resolution self) -> Resolution
        __init__(IMP::pmi::Resolution self, Model m, ParticleIndex id) -> Resolution
        __init__(IMP::pmi::Resolution self, _ParticleAdaptor d) -> Resolution
        """
        this = _IMP_pmi.new_Resolution(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_is_setup(*args):
        """
        get_is_setup(Model m, ParticleIndex pi) -> bool
        get_is_setup(_ParticleAdaptor p) -> bool
        """
        return _IMP_pmi.Resolution_get_is_setup(*args)

    get_is_setup = staticmethod(get_is_setup)

    def show(self, *args):
        """
        show(Resolution self, _ostream out)
        show(Resolution self)
        """
        return _IMP_pmi.Resolution_show(self, *args)


    def setup_particle(*args):
        """
        setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
        setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
        """
        return _IMP_pmi.Resolution_setup_particle(*args)

    setup_particle = staticmethod(setup_particle)

    def get_resolution_key():
        """get_resolution_key() -> FloatKey"""
        return _IMP_pmi.Resolution_get_resolution_key()

    get_resolution_key = staticmethod(get_resolution_key)

    def add_attribute(self, *args):
        """
        add_attribute(Resolution self, FloatKey k, IMP::Float v, bool opt)
        add_attribute(Resolution self, FloatKey a0, IMP::Float a1)
        add_attribute(Resolution self, IntKey a0, IMP::Int a1)
        add_attribute(Resolution self, StringKey a0, IMP::String a1)
        add_attribute(Resolution self, ParticleIndexKey a0, Particle a1)
        add_attribute(Resolution self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Resolution_add_attribute(self, *args)


    def get_value(self, *args):
        """
        get_value(Resolution self, FloatKey a0) -> IMP::Float
        get_value(Resolution self, IntKey a0) -> IMP::Int
        get_value(Resolution self, StringKey a0) -> IMP::String
        get_value(Resolution self, ParticleIndexKey a0) -> Particle
        get_value(Resolution self, ObjectKey a0) -> Object
        """
        return _IMP_pmi.Resolution_get_value(self, *args)


    def set_value(self, *args):
        """
        set_value(Resolution self, FloatKey a0, IMP::Float a1)
        set_value(Resolution self, IntKey a0, IMP::Int a1)
        set_value(Resolution self, StringKey a0, IMP::String a1)
        set_value(Resolution self, ParticleIndexKey a0, Particle a1)
        set_value(Resolution self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Resolution_set_value(self, *args)


    def remove_attribute(self, *args):
        """
        remove_attribute(Resolution self, FloatKey a0)
        remove_attribute(Resolution self, IntKey a0)
        remove_attribute(Resolution self, StringKey a0)
        remove_attribute(Resolution self, ParticleIndexKey a0)
        remove_attribute(Resolution self, ObjectKey a0)
        """
        return _IMP_pmi.Resolution_remove_attribute(self, *args)


    def has_attribute(self, *args):
        """
        has_attribute(Resolution self, FloatKey a0) -> bool
        has_attribute(Resolution self, IntKey a0) -> bool
        has_attribute(Resolution self, StringKey a0) -> bool
        has_attribute(Resolution self, ParticleIndexKey a0) -> bool
        has_attribute(Resolution self, ObjectKey a0) -> bool
        """
        return _IMP_pmi.Resolution_has_attribute(self, *args)


    def get_derivative(self, a0):
        """get_derivative(Resolution self, FloatKey a0) -> double"""
        return _IMP_pmi.Resolution_get_derivative(self, a0)


    def get_name(self):
        """get_name(Resolution self) -> std::string"""
        return _IMP_pmi.Resolution_get_name(self)


    def clear_caches(self):
        """clear_caches(Resolution self)"""
        return _IMP_pmi.Resolution_clear_caches(self)


    def set_name(self, a0):
        """set_name(Resolution self, std::string a0)"""
        return _IMP_pmi.Resolution_set_name(self, a0)


    def set_check_level(self, a0):
        """set_check_level(Resolution self, IMP::CheckLevel a0)"""
        return _IMP_pmi.Resolution_set_check_level(self, a0)


    def add_to_derivative(self, a0, a1, a2):
        """add_to_derivative(Resolution self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
        return _IMP_pmi.Resolution_add_to_derivative(self, a0, a1, a2)


    def set_is_optimized(self, a0, a1):
        """set_is_optimized(Resolution self, FloatKey a0, bool a1)"""
        return _IMP_pmi.Resolution_set_is_optimized(self, a0, a1)


    def get_is_optimized(self, a0):
        """get_is_optimized(Resolution self, FloatKey a0) -> bool"""
        return _IMP_pmi.Resolution_get_is_optimized(self, a0)


    def get_check_level(self):
        """get_check_level(Resolution self) -> IMP::CheckLevel"""
        return _IMP_pmi.Resolution_get_check_level(self)


    def __eq__(self, *args):
        """
        __eq__(Resolution self, Resolution o) -> bool
        __eq__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___eq__(self, *args)


    def __ne__(self, *args):
        """
        __ne__(Resolution self, Resolution o) -> bool
        __ne__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___ne__(self, *args)


    def __le__(self, *args):
        """
        __le__(Resolution self, Resolution o) -> bool
        __le__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___le__(self, *args)


    def __lt__(self, *args):
        """
        __lt__(Resolution self, Resolution o) -> bool
        __lt__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___lt__(self, *args)


    def __ge__(self, *args):
        """
        __ge__(Resolution self, Resolution o) -> bool
        __ge__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___ge__(self, *args)


    def __gt__(self, *args):
        """
        __gt__(Resolution self, Resolution o) -> bool
        __gt__(Resolution self, Particle d) -> bool
        """
        return _IMP_pmi.Resolution___gt__(self, *args)


    def __hash__(self):
        """__hash__(Resolution self) -> std::size_t"""
        return _IMP_pmi.Resolution___hash__(self)


    def __str__(self):
        """__str__(Resolution self) -> std::string"""
        return _IMP_pmi.Resolution___str__(self)


    def __repr__(self):
        """__repr__(Resolution self) -> std::string"""
        return _IMP_pmi.Resolution___repr__(self)

    __swig_destroy__ = _IMP_pmi.delete_Resolution
    __del__ = lambda self: None
Resolution_swigregister = _IMP_pmi.Resolution_swigregister
Resolution_swigregister(Resolution)

def Resolution_get_is_setup(*args):
    """
    get_is_setup(Model m, ParticleIndex pi) -> bool
    Resolution_get_is_setup(_ParticleAdaptor p) -> bool
    """
    return _IMP_pmi.Resolution_get_is_setup(*args)

def Resolution_setup_particle(*args):
    """
    setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
    Resolution_setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
    """
    return _IMP_pmi.Resolution_setup_particle(*args)

def Resolution_get_resolution_key():
    """Resolution_get_resolution_key() -> FloatKey"""
    return _IMP_pmi.Resolution_get_resolution_key()

class Symmetric(IMP.Decorator):
    """Proxy of C++ IMP::pmi::Symmetric class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def get_symmetric(self):
        """get_symmetric(Symmetric self) -> IMP::Float"""
        return _IMP_pmi.Symmetric_get_symmetric(self)


    def set_symmetric(self, d):
        """set_symmetric(Symmetric self, IMP::Float d)"""
        return _IMP_pmi.Symmetric_set_symmetric(self, d)


    def __init__(self, *args):
        """
        __init__(IMP::pmi::Symmetric self) -> Symmetric
        __init__(IMP::pmi::Symmetric self, Model m, ParticleIndex id) -> Symmetric
        __init__(IMP::pmi::Symmetric self, _ParticleAdaptor d) -> Symmetric
        """
        this = _IMP_pmi.new_Symmetric(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def get_is_setup(*args):
        """
        get_is_setup(Model m, ParticleIndex pi) -> bool
        get_is_setup(_ParticleAdaptor p) -> bool
        """
        return _IMP_pmi.Symmetric_get_is_setup(*args)

    get_is_setup = staticmethod(get_is_setup)

    def show(self, *args):
        """
        show(Symmetric self, _ostream out)
        show(Symmetric self)
        """
        return _IMP_pmi.Symmetric_show(self, *args)


    def setup_particle(*args):
        """
        setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
        setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
        """
        return _IMP_pmi.Symmetric_setup_particle(*args)

    setup_particle = staticmethod(setup_particle)

    def get_symmetric_key():
        """get_symmetric_key() -> FloatKey"""
        return _IMP_pmi.Symmetric_get_symmetric_key()

    get_symmetric_key = staticmethod(get_symmetric_key)

    def add_attribute(self, *args):
        """
        add_attribute(Symmetric self, FloatKey k, IMP::Float v, bool opt)
        add_attribute(Symmetric self, FloatKey a0, IMP::Float a1)
        add_attribute(Symmetric self, IntKey a0, IMP::Int a1)
        add_attribute(Symmetric self, StringKey a0, IMP::String a1)
        add_attribute(Symmetric self, ParticleIndexKey a0, Particle a1)
        add_attribute(Symmetric self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Symmetric_add_attribute(self, *args)


    def get_value(self, *args):
        """
        get_value(Symmetric self, FloatKey a0) -> IMP::Float
        get_value(Symmetric self, IntKey a0) -> IMP::Int
        get_value(Symmetric self, StringKey a0) -> IMP::String
        get_value(Symmetric self, ParticleIndexKey a0) -> Particle
        get_value(Symmetric self, ObjectKey a0) -> Object
        """
        return _IMP_pmi.Symmetric_get_value(self, *args)


    def set_value(self, *args):
        """
        set_value(Symmetric self, FloatKey a0, IMP::Float a1)
        set_value(Symmetric self, IntKey a0, IMP::Int a1)
        set_value(Symmetric self, StringKey a0, IMP::String a1)
        set_value(Symmetric self, ParticleIndexKey a0, Particle a1)
        set_value(Symmetric self, ObjectKey a0, Object a1)
        """
        return _IMP_pmi.Symmetric_set_value(self, *args)


    def remove_attribute(self, *args):
        """
        remove_attribute(Symmetric self, FloatKey a0)
        remove_attribute(Symmetric self, IntKey a0)
        remove_attribute(Symmetric self, StringKey a0)
        remove_attribute(Symmetric self, ParticleIndexKey a0)
        remove_attribute(Symmetric self, ObjectKey a0)
        """
        return _IMP_pmi.Symmetric_remove_attribute(self, *args)


    def has_attribute(self, *args):
        """
        has_attribute(Symmetric self, FloatKey a0) -> bool
        has_attribute(Symmetric self, IntKey a0) -> bool
        has_attribute(Symmetric self, StringKey a0) -> bool
        has_attribute(Symmetric self, ParticleIndexKey a0) -> bool
        has_attribute(Symmetric self, ObjectKey a0) -> bool
        """
        return _IMP_pmi.Symmetric_has_attribute(self, *args)


    def get_derivative(self, a0):
        """get_derivative(Symmetric self, FloatKey a0) -> double"""
        return _IMP_pmi.Symmetric_get_derivative(self, a0)


    def get_name(self):
        """get_name(Symmetric self) -> std::string"""
        return _IMP_pmi.Symmetric_get_name(self)


    def clear_caches(self):
        """clear_caches(Symmetric self)"""
        return _IMP_pmi.Symmetric_clear_caches(self)


    def set_name(self, a0):
        """set_name(Symmetric self, std::string a0)"""
        return _IMP_pmi.Symmetric_set_name(self, a0)


    def set_check_level(self, a0):
        """set_check_level(Symmetric self, IMP::CheckLevel a0)"""
        return _IMP_pmi.Symmetric_set_check_level(self, a0)


    def add_to_derivative(self, a0, a1, a2):
        """add_to_derivative(Symmetric self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
        return _IMP_pmi.Symmetric_add_to_derivative(self, a0, a1, a2)


    def set_is_optimized(self, a0, a1):
        """set_is_optimized(Symmetric self, FloatKey a0, bool a1)"""
        return _IMP_pmi.Symmetric_set_is_optimized(self, a0, a1)


    def get_is_optimized(self, a0):
        """get_is_optimized(Symmetric self, FloatKey a0) -> bool"""
        return _IMP_pmi.Symmetric_get_is_optimized(self, a0)


    def get_check_level(self):
        """get_check_level(Symmetric self) -> IMP::CheckLevel"""
        return _IMP_pmi.Symmetric_get_check_level(self)


    def __eq__(self, *args):
        """
        __eq__(Symmetric self, Symmetric o) -> bool
        __eq__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___eq__(self, *args)


    def __ne__(self, *args):
        """
        __ne__(Symmetric self, Symmetric o) -> bool
        __ne__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___ne__(self, *args)


    def __le__(self, *args):
        """
        __le__(Symmetric self, Symmetric o) -> bool
        __le__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___le__(self, *args)


    def __lt__(self, *args):
        """
        __lt__(Symmetric self, Symmetric o) -> bool
        __lt__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___lt__(self, *args)


    def __ge__(self, *args):
        """
        __ge__(Symmetric self, Symmetric o) -> bool
        __ge__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___ge__(self, *args)


    def __gt__(self, *args):
        """
        __gt__(Symmetric self, Symmetric o) -> bool
        __gt__(Symmetric self, Particle d) -> bool
        """
        return _IMP_pmi.Symmetric___gt__(self, *args)


    def __hash__(self):
        """__hash__(Symmetric self) -> std::size_t"""
        return _IMP_pmi.Symmetric___hash__(self)


    def __str__(self):
        """__str__(Symmetric self) -> std::string"""
        return _IMP_pmi.Symmetric___str__(self)


    def __repr__(self):
        """__repr__(Symmetric self) -> std::string"""
        return _IMP_pmi.Symmetric___repr__(self)

    __swig_destroy__ = _IMP_pmi.delete_Symmetric
    __del__ = lambda self: None
Symmetric_swigregister = _IMP_pmi.Symmetric_swigregister
Symmetric_swigregister(Symmetric)

def Symmetric_get_is_setup(*args):
    """
    get_is_setup(Model m, ParticleIndex pi) -> bool
    Symmetric_get_is_setup(_ParticleAdaptor p) -> bool
    """
    return _IMP_pmi.Symmetric_get_is_setup(*args)

def Symmetric_setup_particle(*args):
    """
    setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
    Symmetric_setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
    """
    return _IMP_pmi.Symmetric_setup_particle(*args)

def Symmetric_get_symmetric_key():
    """Symmetric_get_symmetric_key() -> FloatKey"""
    return _IMP_pmi.Symmetric_get_symmetric_key()

class SigmoidRestraintSphere(IMP.Restraint):
    """Proxy of C++ IMP::pmi::SigmoidRestraintSphere class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args):
        """
        __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0, std::string name) -> SigmoidRestraintSphere
        __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0) -> SigmoidRestraintSphere
        __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude) -> SigmoidRestraintSphere
        """
        this = _IMP_pmi.new_SigmoidRestraintSphere(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def set_amplitude(self, amplitude):
        """set_amplitude(SigmoidRestraintSphere self, double amplitude)"""
        return _IMP_pmi.SigmoidRestraintSphere_set_amplitude(self, amplitude)


    def increment_amplitude(self, amplitude):
        """increment_amplitude(SigmoidRestraintSphere self, double amplitude)"""
        return _IMP_pmi.SigmoidRestraintSphere_increment_amplitude(self, amplitude)


    def get_amplitude(self):
        """get_amplitude(SigmoidRestraintSphere self) -> double"""
        return _IMP_pmi.SigmoidRestraintSphere_get_amplitude(self)


    def do_get_inputs(self):
        """do_get_inputs(SigmoidRestraintSphere self) -> IMP::ModelObjectsTemp"""
        return _IMP_pmi.SigmoidRestraintSphere_do_get_inputs(self)


    def get_version_info(self):
        """get_version_info(SigmoidRestraintSphere self) -> VersionInfo"""
        return _IMP_pmi.SigmoidRestraintSphere_get_version_info(self)


    def __str__(self):
        """__str__(SigmoidRestraintSphere self) -> std::string"""
        return _IMP_pmi.SigmoidRestraintSphere___str__(self)


    def __repr__(self):
        """__repr__(SigmoidRestraintSphere self) -> std::string"""
        return _IMP_pmi.SigmoidRestraintSphere___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_SigmoidRestraintSphere(o)

SigmoidRestraintSphere_swigregister = _IMP_pmi.SigmoidRestraintSphere_swigregister
SigmoidRestraintSphere_swigregister(SigmoidRestraintSphere)

class TransformMover(IMP.core.MonteCarloMover):
    """Proxy of C++ IMP::pmi::TransformMover class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self, *args):
        """
        __init__(IMP::pmi::TransformMover self, Model m, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
        __init__(IMP::pmi::TransformMover self, Model m, Vector3D axis, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
        __init__(IMP::pmi::TransformMover self, Model m, _ParticleIndexAdaptor p1i, _ParticleIndexAdaptor p2i, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
        """
        this = _IMP_pmi.new_TransformMover(*args)
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def add_xyz_particle(self, pi):
        """add_xyz_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
        return _IMP_pmi.TransformMover_add_xyz_particle(self, pi)


    def add_rigid_body_particle(self, pi):
        """add_rigid_body_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
        return _IMP_pmi.TransformMover_add_rigid_body_particle(self, pi)


    def set_maximum_translation(self, mt):
        """set_maximum_translation(TransformMover self, IMP::Float mt)"""
        return _IMP_pmi.TransformMover_set_maximum_translation(self, mt)


    def set_maximum_rotation(self, mr):
        """set_maximum_rotation(TransformMover self, IMP::Float mr)"""
        return _IMP_pmi.TransformMover_set_maximum_rotation(self, mr)


    def get_maximum_translation(self):
        """get_maximum_translation(TransformMover self) -> IMP::Float"""
        return _IMP_pmi.TransformMover_get_maximum_translation(self)


    def get_maximum_rotation(self):
        """get_maximum_rotation(TransformMover self) -> IMP::Float"""
        return _IMP_pmi.TransformMover_get_maximum_rotation(self)


    def get_last_transformation(self):
        """get_last_transformation(TransformMover self) -> Transformation3D"""
        return _IMP_pmi.TransformMover_get_last_transformation(self)


    def get_version_info(self):
        """get_version_info(TransformMover self) -> VersionInfo"""
        return _IMP_pmi.TransformMover_get_version_info(self)


    def __str__(self):
        """__str__(TransformMover self) -> std::string"""
        return _IMP_pmi.TransformMover___str__(self)


    def __repr__(self):
        """__repr__(TransformMover self) -> std::string"""
        return _IMP_pmi.TransformMover___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_TransformMover(o)

TransformMover_swigregister = _IMP_pmi.TransformMover_swigregister
TransformMover_swigregister(TransformMover)


def create_elastic_network(ps, dist_cutoff, strength):
    """create_elastic_network(IMP::Particles const & ps, IMP::Float dist_cutoff, IMP::Float strength) -> RestraintSet"""
    return _IMP_pmi.create_elastic_network(ps, dist_cutoff, strength)

def get_dihedral_angle(p1, p2, p3, p4):
    """get_dihedral_angle(Atom p1, Atom p2, Atom p3, Atom p4) -> IMP::Float"""
    return _IMP_pmi.get_dihedral_angle(p1, p2, p3, p4)

def get_bipartite_minimum_sphere_distance(m1, m2):
    """get_bipartite_minimum_sphere_distance(IMP::core::XYZRs const & m1, IMP::core::XYZRs const & m2) -> IMP::Float"""
    return _IMP_pmi.get_bipartite_minimum_sphere_distance(m1, m2)

def get_list_of_bipartite_minimum_sphere_distance(pss):
    """get_list_of_bipartite_minimum_sphere_distance(IMP::ParticlesTemps const & pss) -> IMP::Floats"""
    return _IMP_pmi.get_list_of_bipartite_minimum_sphere_distance(pss)

def get_molecule_name_and_copy(h):
    """get_molecule_name_and_copy(Hierarchy h) -> std::string"""
    return _IMP_pmi.get_molecule_name_and_copy(h)

def get_is_canonical(h):
    """get_is_canonical(Hierarchy h) -> bool"""
    return _IMP_pmi.get_is_canonical(h)
class InternalCoordinatesConstraint(IMP.SingletonModifier):
    """Proxy of C++ IMP::pmi::InternalCoordinatesConstraint class."""

    thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')

    def __init__(self):
        """__init__(IMP::pmi::InternalCoordinatesConstraint self) -> InternalCoordinatesConstraint"""
        this = _IMP_pmi.new_InternalCoordinatesConstraint()
        try:
            self.this.append(this)
        except __builtin__.Exception:
            self.this = this

    def do_get_inputs(self, m, pis):
        """do_get_inputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
        return _IMP_pmi.InternalCoordinatesConstraint_do_get_inputs(self, m, pis)


    def do_get_outputs(self, m, pis):
        """do_get_outputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
        return _IMP_pmi.InternalCoordinatesConstraint_do_get_outputs(self, m, pis)


    def get_version_info(self):
        """get_version_info(InternalCoordinatesConstraint self) -> VersionInfo"""
        return _IMP_pmi.InternalCoordinatesConstraint_get_version_info(self)


    def __str__(self):
        """__str__(InternalCoordinatesConstraint self) -> std::string"""
        return _IMP_pmi.InternalCoordinatesConstraint___str__(self)


    def __repr__(self):
        """__repr__(InternalCoordinatesConstraint self) -> std::string"""
        return _IMP_pmi.InternalCoordinatesConstraint___repr__(self)


    @staticmethod
    def get_from(o):
       return _object_cast_to_InternalCoordinatesConstraint(o)

InternalCoordinatesConstraint_swigregister = _IMP_pmi.InternalCoordinatesConstraint_swigregister
InternalCoordinatesConstraint_swigregister(InternalCoordinatesConstraint)


def get_module_version():
    """get_module_version() -> std::string const"""
    return _IMP_pmi.get_module_version()

def get_example_path(fname):
    """get_example_path(std::string fname) -> std::string"""
    return _IMP_pmi.get_example_path(fname)

def get_data_path(fname):
    """get_data_path(std::string fname) -> std::string"""
    return _IMP_pmi.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()