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IMP Reference Guide  2.8.0
The Integrative Modeling Platform
pepdock/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2017 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_pepdock')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_pepdock')
25  _IMP_pepdock = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_pepdock', [dirname(__file__)])
34  except ImportError:
35  import _IMP_pepdock
36  return _IMP_pepdock
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_pepdock', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_pepdock = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_pepdock
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PEPDOCK_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PEPDOCK_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_pepdock.delete_IMP_PEPDOCK_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
126  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
132  incr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
133  """
134  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_PEPDOCK_SwigPyIterator self, size_t n=1) -> IMP_PEPDOCK_SwigPyIterator
140  decr(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator
141  """
142  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
152  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_PEPDOCK_SwigPyIterator self) -> IMP_PEPDOCK_SwigPyIterator"""
157  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
162  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
167  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_PEPDOCK_SwigPyIterator self) -> PyObject *"""
172  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
177  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
182  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> bool"""
187  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
192  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
197  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator"""
202  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_PEPDOCK_SwigPyIterator self, ptrdiff_t n) -> IMP_PEPDOCK_SwigPyIterator
208  __sub__(IMP_PEPDOCK_SwigPyIterator self, IMP_PEPDOCK_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_PEPDOCK_SwigPyIterator_swigregister = _IMP_pepdock.IMP_PEPDOCK_SwigPyIterator_swigregister
215 IMP_PEPDOCK_SwigPyIterator_swigregister(IMP_PEPDOCK_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_pepdock.IMP_DEBUG
224 IMP_RELEASE = _IMP_pepdock.IMP_RELEASE
225 IMP_SILENT = _IMP_pepdock.IMP_SILENT
226 IMP_PROGRESS = _IMP_pepdock.IMP_PROGRESS
227 IMP_TERSE = _IMP_pepdock.IMP_TERSE
228 IMP_VERBOSE = _IMP_pepdock.IMP_VERBOSE
229 IMP_MEMORY = _IMP_pepdock.IMP_MEMORY
230 IMP_NONE = _IMP_pepdock.IMP_NONE
231 IMP_USAGE = _IMP_pepdock.IMP_USAGE
232 IMP_INTERNAL = _IMP_pepdock.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_pepdock.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_pepdock.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pepdock.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pepdock.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pepdock.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pepdock.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_pepdock.IMPKERNEL_SHOW_WARNINGS
242 
243 import sys
244 class _DirectorObjects(object):
245  """@internal Simple class to keep references to director objects
246  to prevent premature deletion."""
247  def __init__(self):
248  self._objects = []
249  def register(self, obj):
250  """Take a reference to a director object; will only work for
251  refcounted C++ classes"""
252  if hasattr(obj, 'get_ref_count'):
253  self._objects.append(obj)
254  def cleanup(self):
255  """Only drop our reference and allow cleanup by Python if no other
256  Python references exist (we hold 3 references: one in self._objects,
257  one in x, and one in the argument list for getrefcount) *and* no
258  other C++ references exist (the Python object always holds one)"""
259  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
260  or x.get_ref_count() > 1]
261 # Do in two steps so the references are kept until the end of the
262 # function (deleting references may trigger a fresh call to this method)
263  self._objects = objs
264  def get_object_count(self):
265  """Get number of director objects (useful for testing only)"""
266  return len(self._objects)
267 _director_objects = _DirectorObjects()
268 
269 class _ostream(object):
270  """Proxy of C++ std::ostream class."""
271 
272  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
273 
274  def __init__(self, *args, **kwargs):
275  raise AttributeError("No constructor defined")
276  __repr__ = _swig_repr
277 
278  def write(self, osa_buf):
279  """write(_ostream self, char const * osa_buf)"""
280  return _IMP_pepdock._ostream_write(self, osa_buf)
281 
282 _ostream_swigregister = _IMP_pepdock._ostream_swigregister
283 _ostream_swigregister(_ostream)
284 
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_pepdock.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_pepdock.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_pepdock.IMP_HAS_NOEXCEPT
288 import IMP
289 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_FILESYSTEM
290 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
291 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_RANDOM
292 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CGAL_HAS_BOOST_SYSTEM
293 IMPCGAL_SHOW_WARNINGS = _IMP_pepdock.IMPCGAL_SHOW_WARNINGS
294 import IMP.cgal
295 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_IMP_CGAL
296 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
297 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
298 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_RANDOM
299 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ALGEBRA_HAS_BOOST_SYSTEM
300 IMP_ALGEBRA_HAS_CGAL = _IMP_pepdock.IMP_ALGEBRA_HAS_CGAL
301 IMP_ALGEBRA_HAS_ANN = _IMP_pepdock.IMP_ALGEBRA_HAS_ANN
302 IMPALGEBRA_SHOW_WARNINGS = _IMP_pepdock.IMPALGEBRA_SHOW_WARNINGS
303 import IMP.algebra
304 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_IMP_CGAL
305 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
306 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
307 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_RANDOM
308 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DISPLAY_HAS_BOOST_SYSTEM
309 IMP_DISPLAY_HAS_CGAL = _IMP_pepdock.IMP_DISPLAY_HAS_CGAL
310 IMPDISPLAY_SHOW_WARNINGS = _IMP_pepdock.IMPDISPLAY_SHOW_WARNINGS
311 import IMP.display
312 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
313 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
314 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
315 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
316 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
317 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_CGAL
318 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pepdock.IMP_SCORE_FUNCTOR_HAS_HDF5
319 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pepdock.IMPSCOREFUNCTOR_SHOW_WARNINGS
320 import IMP.score_functor
321 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_IMP_CGAL
322 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
323 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
324 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_RANDOM
325 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_STATISTICS_HAS_BOOST_SYSTEM
326 IMP_STATISTICS_HAS_CGAL = _IMP_pepdock.IMP_STATISTICS_HAS_CGAL
327 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pepdock.IMPSTATISTICS_SHOW_WARNINGS
328 import IMP.statistics
329 IMP_CORE_HAS_IMP_CGAL = _IMP_pepdock.IMP_CORE_HAS_IMP_CGAL
330 IMP_CORE_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CORE_HAS_IMP_KERNEL
331 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_FILESYSTEM
332 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
333 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CORE_HAS_BOOST_RANDOM
334 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CORE_HAS_BOOST_SYSTEM
335 IMP_CORE_HAS_CGAL = _IMP_pepdock.IMP_CORE_HAS_CGAL
336 IMP_CORE_HAS_HDF5 = _IMP_pepdock.IMP_CORE_HAS_HDF5
337 IMPCORE_SHOW_WARNINGS = _IMP_pepdock.IMPCORE_SHOW_WARNINGS
338 import IMP.core
339 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_ALGEBRA
340 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_CGAL
341 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_DISPLAY
342 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_KERNEL
343 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
344 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
345 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
346 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_RANDOM
347 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_CONTAINER_HAS_BOOST_SYSTEM
348 IMP_CONTAINER_HAS_CGAL = _IMP_pepdock.IMP_CONTAINER_HAS_CGAL
349 IMP_CONTAINER_HAS_HDF5 = _IMP_pepdock.IMP_CONTAINER_HAS_HDF5
350 IMPCONTAINER_SHOW_WARNINGS = _IMP_pepdock.IMPCONTAINER_SHOW_WARNINGS
351 import IMP.container
352 IMP_ATOM_HAS_IMP_CGAL = _IMP_pepdock.IMP_ATOM_HAS_IMP_CGAL
353 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pepdock.IMP_ATOM_HAS_IMP_KERNEL
354 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
355 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
356 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_RANDOM
357 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pepdock.IMP_ATOM_HAS_BOOST_REGEX
358 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_ATOM_HAS_BOOST_SYSTEM
359 IMP_ATOM_HAS_CGAL = _IMP_pepdock.IMP_ATOM_HAS_CGAL
360 IMP_ATOM_HAS_HDF5 = _IMP_pepdock.IMP_ATOM_HAS_HDF5
361 IMPATOM_SHOW_WARNINGS = _IMP_pepdock.IMPATOM_SHOW_WARNINGS
362 IMP_ATOM_TYPE_INDEX = _IMP_pepdock.IMP_ATOM_TYPE_INDEX
363 IMP_RESIDUE_TYPE_INDEX = _IMP_pepdock.IMP_RESIDUE_TYPE_INDEX
364 IMP_HIERARCHY_TYPE_INDEX = _IMP_pepdock.IMP_HIERARCHY_TYPE_INDEX
365 import IMP.atom
366 IMP_RMF_HAS_IMP_CGAL = _IMP_pepdock.IMP_RMF_HAS_IMP_CGAL
367 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
368 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_FILESYSTEM
369 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
370 IMP_RMF_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_RMF_HAS_BOOST_RANDOM
371 IMP_RMF_HAS_BOOST_REGEX = _IMP_pepdock.IMP_RMF_HAS_BOOST_REGEX
372 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_RMF_HAS_BOOST_SYSTEM
373 IMP_RMF_HAS_CGAL = _IMP_pepdock.IMP_RMF_HAS_CGAL
374 IMP_RMF_HAS_HDF5 = _IMP_pepdock.IMP_RMF_HAS_HDF5
375 IMPRMF_SHOW_WARNINGS = _IMP_pepdock.IMPRMF_SHOW_WARNINGS
376 import IMP.rmf
377 import RMF
378 IMP_DOMINO_HAS_IMP_ATOM = _IMP_pepdock.IMP_DOMINO_HAS_IMP_ATOM
379 IMP_DOMINO_HAS_IMP_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_CGAL
380 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_pepdock.IMP_DOMINO_HAS_IMP_KERNEL
381 IMP_DOMINO_HAS_IMP_RMF = _IMP_pepdock.IMP_DOMINO_HAS_IMP_RMF
382 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
383 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_FILESYSTEM
384 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
385 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_RANDOM
386 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_REGEX
387 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_DOMINO_HAS_BOOST_SYSTEM
388 IMP_DOMINO_HAS_CGAL = _IMP_pepdock.IMP_DOMINO_HAS_CGAL
389 IMP_DOMINO_HAS_HDF5 = _IMP_pepdock.IMP_DOMINO_HAS_HDF5
390 IMP_DOMINO_HAS_RMF = _IMP_pepdock.IMP_DOMINO_HAS_RMF
391 IMPDOMINO_SHOW_WARNINGS = _IMP_pepdock.IMPDOMINO_SHOW_WARNINGS
392 import RMF_HDF5
393 import IMP.domino
394 IMP_PEPDOCK_HAS_IMP_ALGEBRA = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ALGEBRA
395 IMP_PEPDOCK_HAS_IMP_ATOM = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_ATOM
396 IMP_PEPDOCK_HAS_IMP_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_CGAL
397 IMP_PEPDOCK_HAS_IMP_DISPLAY = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_DISPLAY
398 IMP_PEPDOCK_HAS_IMP_KERNEL = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_KERNEL
399 IMP_PEPDOCK_HAS_IMP_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_RMF
400 IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_SCORE_FUNCTOR
401 IMP_PEPDOCK_HAS_IMP_STATISTICS = _IMP_pepdock.IMP_PEPDOCK_HAS_IMP_STATISTICS
402 IMP_PEPDOCK_HAS_BOOST_FILESYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_FILESYSTEM
403 IMP_PEPDOCK_HAS_BOOST_GRAPH = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_GRAPH
404 IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_PROGRAMOPTIONS
405 IMP_PEPDOCK_HAS_BOOST_RANDOM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_RANDOM
406 IMP_PEPDOCK_HAS_BOOST_REGEX = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_REGEX
407 IMP_PEPDOCK_HAS_BOOST_SYSTEM = _IMP_pepdock.IMP_PEPDOCK_HAS_BOOST_SYSTEM
408 IMP_PEPDOCK_HAS_CGAL = _IMP_pepdock.IMP_PEPDOCK_HAS_CGAL
409 IMP_PEPDOCK_HAS_HDF5 = _IMP_pepdock.IMP_PEPDOCK_HAS_HDF5
410 IMP_PEPDOCK_HAS_RMF = _IMP_pepdock.IMP_PEPDOCK_HAS_RMF
411 IMPPEPDOCK_SHOW_WARNINGS = _IMP_pepdock.IMPPEPDOCK_SHOW_WARNINGS
412 
413 def get_module_version():
414  """get_module_version() -> std::string const"""
415  return _IMP_pepdock.get_module_version()
416 
417 def get_example_path(fname):
418  """get_example_path(std::string fname) -> std::string"""
419  return _IMP_pepdock.get_example_path(fname)
420 
421 def get_data_path(fname):
422  """get_data_path(std::string fname) -> std::string"""
423  return _IMP_pepdock.get_data_path(fname)
424 
425 from . import _version_check
426 _version_check.check_version(get_module_version())
427 __version__ = get_module_version()
428 
429 
430 
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def __init__
Constructor.
Code to compute statistical measures.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for the RMF file format for storing hierarchical molecular data and markup.
Divide-and-conquer inferential optimization in discrete space.