10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_kinematics')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_kinematics')
25 _IMP_kinematics = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_kinematics', [dirname(__file__)])
35 import _IMP_kinematics
36 return _IMP_kinematics
39 _mod = imp.load_module(
'_IMP_kinematics', fp, pathname, description)
43 _IMP_kinematics = swig_import_helper()
44 del swig_import_helper
46 import _IMP_kinematics
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_KINEMATICS_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_KINEMATICS_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_kinematics.delete_IMP_KINEMATICS_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_KINEMATICS_SwigPyIterator self) -> PyObject *"""
126 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_value(self)
131 incr(IMP_KINEMATICS_SwigPyIterator self, size_t n=1) -> IMP_KINEMATICS_SwigPyIterator
132 incr(IMP_KINEMATICS_SwigPyIterator self) -> IMP_KINEMATICS_SwigPyIterator
134 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_incr(self, n)
139 decr(IMP_KINEMATICS_SwigPyIterator self, size_t n=1) -> IMP_KINEMATICS_SwigPyIterator
140 decr(IMP_KINEMATICS_SwigPyIterator self) -> IMP_KINEMATICS_SwigPyIterator
142 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_KINEMATICS_SwigPyIterator self, IMP_KINEMATICS_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_distance(self, x)
151 """equal(IMP_KINEMATICS_SwigPyIterator self, IMP_KINEMATICS_SwigPyIterator x) -> bool"""
152 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_equal(self, x)
156 """copy(IMP_KINEMATICS_SwigPyIterator self) -> IMP_KINEMATICS_SwigPyIterator"""
157 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_copy(self)
161 """next(IMP_KINEMATICS_SwigPyIterator self) -> PyObject *"""
162 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_next(self)
166 """__next__(IMP_KINEMATICS_SwigPyIterator self) -> PyObject *"""
167 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___next__(self)
171 """previous(IMP_KINEMATICS_SwigPyIterator self) -> PyObject *"""
172 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_KINEMATICS_SwigPyIterator self, ptrdiff_t n) -> IMP_KINEMATICS_SwigPyIterator"""
177 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_KINEMATICS_SwigPyIterator self, IMP_KINEMATICS_SwigPyIterator x) -> bool"""
182 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_KINEMATICS_SwigPyIterator self, IMP_KINEMATICS_SwigPyIterator x) -> bool"""
187 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_KINEMATICS_SwigPyIterator self, ptrdiff_t n) -> IMP_KINEMATICS_SwigPyIterator"""
192 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_KINEMATICS_SwigPyIterator self, ptrdiff_t n) -> IMP_KINEMATICS_SwigPyIterator"""
197 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_KINEMATICS_SwigPyIterator self, ptrdiff_t n) -> IMP_KINEMATICS_SwigPyIterator"""
202 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_KINEMATICS_SwigPyIterator self, ptrdiff_t n) -> IMP_KINEMATICS_SwigPyIterator
208 __sub__(IMP_KINEMATICS_SwigPyIterator self, IMP_KINEMATICS_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator___sub__(self, *args)
214 IMP_KINEMATICS_SwigPyIterator_swigregister = _IMP_kinematics.IMP_KINEMATICS_SwigPyIterator_swigregister
215 IMP_KINEMATICS_SwigPyIterator_swigregister(IMP_KINEMATICS_SwigPyIterator)
223 IMP_DEBUG = _IMP_kinematics.IMP_DEBUG
224 IMP_RELEASE = _IMP_kinematics.IMP_RELEASE
225 IMP_SILENT = _IMP_kinematics.IMP_SILENT
226 IMP_PROGRESS = _IMP_kinematics.IMP_PROGRESS
227 IMP_TERSE = _IMP_kinematics.IMP_TERSE
228 IMP_VERBOSE = _IMP_kinematics.IMP_VERBOSE
229 IMP_MEMORY = _IMP_kinematics.IMP_MEMORY
230 IMP_NONE = _IMP_kinematics.IMP_NONE
231 IMP_USAGE = _IMP_kinematics.IMP_USAGE
232 IMP_INTERNAL = _IMP_kinematics.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_kinematics.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_kinematics.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_kinematics.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_kinematics.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_kinematics.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_kinematics.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_kinematics.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_kinematics.IMPKERNEL_SHOW_WARNINGS
244 class _DirectorObjects(object):
245 """@internal Simple class to keep references to director objects
246 to prevent premature deletion."""
249 def register(self, obj):
250 """Take a reference to a director object; will only work for
251 refcounted C++ classes"""
252 if hasattr(obj,
'get_ref_count'):
253 self._objects.append(obj)
255 """Only drop our reference and allow cleanup by Python if no other
256 Python references exist (we hold 3 references: one in self._objects,
257 one in x, and one in the argument list for getrefcount) *and* no
258 other C++ references exist (the Python object always holds one)"""
259 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
260 or x.get_ref_count() > 1]
264 def get_object_count(self):
265 """Get number of director objects (useful for testing only)"""
266 return len(self._objects)
267 _director_objects = _DirectorObjects()
269 class _ostream(object):
270 """Proxy of C++ std::ostream class."""
272 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
274 def __init__(self, *args, **kwargs):
275 raise AttributeError(
"No constructor defined")
276 __repr__ = _swig_repr
278 def write(self, osa_buf):
279 """write(_ostream self, char const * osa_buf)"""
280 return _IMP_kinematics._ostream_write(self, osa_buf)
282 _ostream_swigregister = _IMP_kinematics._ostream_swigregister
283 _ostream_swigregister(_ostream)
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_kinematics.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_kinematics.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_kinematics.IMP_HAS_NOEXCEPT
289 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_CGAL_HAS_BOOST_FILESYSTEM
290 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
291 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_CGAL_HAS_BOOST_RANDOM
292 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_CGAL_HAS_BOOST_SYSTEM
293 IMPCGAL_SHOW_WARNINGS = _IMP_kinematics.IMPCGAL_SHOW_WARNINGS
295 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_kinematics.IMP_ALGEBRA_HAS_IMP_CGAL
296 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
297 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
298 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_ALGEBRA_HAS_BOOST_RANDOM
299 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_ALGEBRA_HAS_BOOST_SYSTEM
300 IMP_ALGEBRA_HAS_CGAL = _IMP_kinematics.IMP_ALGEBRA_HAS_CGAL
301 IMP_ALGEBRA_HAS_ANN = _IMP_kinematics.IMP_ALGEBRA_HAS_ANN
302 IMPALGEBRA_SHOW_WARNINGS = _IMP_kinematics.IMPALGEBRA_SHOW_WARNINGS
304 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_kinematics.IMP_DISPLAY_HAS_IMP_CGAL
305 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
306 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
307 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_DISPLAY_HAS_BOOST_RANDOM
308 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_DISPLAY_HAS_BOOST_SYSTEM
309 IMP_DISPLAY_HAS_CGAL = _IMP_kinematics.IMP_DISPLAY_HAS_CGAL
310 IMPDISPLAY_SHOW_WARNINGS = _IMP_kinematics.IMPDISPLAY_SHOW_WARNINGS
312 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
313 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
314 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
315 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
316 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
317 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_CGAL
318 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_kinematics.IMP_SCORE_FUNCTOR_HAS_HDF5
319 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_kinematics.IMPSCOREFUNCTOR_SHOW_WARNINGS
321 IMP_CORE_HAS_IMP_CGAL = _IMP_kinematics.IMP_CORE_HAS_IMP_CGAL
322 IMP_CORE_HAS_IMP_KERNEL = _IMP_kinematics.IMP_CORE_HAS_IMP_KERNEL
323 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_CORE_HAS_BOOST_FILESYSTEM
324 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
325 IMP_CORE_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_CORE_HAS_BOOST_RANDOM
326 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_CORE_HAS_BOOST_SYSTEM
327 IMP_CORE_HAS_CGAL = _IMP_kinematics.IMP_CORE_HAS_CGAL
328 IMP_CORE_HAS_HDF5 = _IMP_kinematics.IMP_CORE_HAS_HDF5
329 IMPCORE_SHOW_WARNINGS = _IMP_kinematics.IMPCORE_SHOW_WARNINGS
331 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_kinematics.IMP_CONTAINER_HAS_IMP_ALGEBRA
332 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_kinematics.IMP_CONTAINER_HAS_IMP_CGAL
333 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_kinematics.IMP_CONTAINER_HAS_IMP_DISPLAY
334 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_kinematics.IMP_CONTAINER_HAS_IMP_KERNEL
335 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_kinematics.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
336 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
337 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
338 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_CONTAINER_HAS_BOOST_RANDOM
339 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_CONTAINER_HAS_BOOST_SYSTEM
340 IMP_CONTAINER_HAS_CGAL = _IMP_kinematics.IMP_CONTAINER_HAS_CGAL
341 IMP_CONTAINER_HAS_HDF5 = _IMP_kinematics.IMP_CONTAINER_HAS_HDF5
342 IMPCONTAINER_SHOW_WARNINGS = _IMP_kinematics.IMPCONTAINER_SHOW_WARNINGS
344 IMP_ATOM_HAS_IMP_CGAL = _IMP_kinematics.IMP_ATOM_HAS_IMP_CGAL
345 IMP_ATOM_HAS_IMP_KERNEL = _IMP_kinematics.IMP_ATOM_HAS_IMP_KERNEL
346 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_kinematics.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
347 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
348 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_ATOM_HAS_BOOST_RANDOM
349 IMP_ATOM_HAS_BOOST_REGEX = _IMP_kinematics.IMP_ATOM_HAS_BOOST_REGEX
350 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_ATOM_HAS_BOOST_SYSTEM
351 IMP_ATOM_HAS_CGAL = _IMP_kinematics.IMP_ATOM_HAS_CGAL
352 IMP_ATOM_HAS_HDF5 = _IMP_kinematics.IMP_ATOM_HAS_HDF5
353 IMPATOM_SHOW_WARNINGS = _IMP_kinematics.IMPATOM_SHOW_WARNINGS
354 IMP_ATOM_TYPE_INDEX = _IMP_kinematics.IMP_ATOM_TYPE_INDEX
355 IMP_RESIDUE_TYPE_INDEX = _IMP_kinematics.IMP_RESIDUE_TYPE_INDEX
356 IMP_HIERARCHY_TYPE_INDEX = _IMP_kinematics.IMP_HIERARCHY_TYPE_INDEX
358 IMP_SAXS_HAS_IMP_CGAL = _IMP_kinematics.IMP_SAXS_HAS_IMP_CGAL
359 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_kinematics.IMP_SAXS_HAS_IMP_CONTAINER
360 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_kinematics.IMP_SAXS_HAS_IMP_DISPLAY
361 IMP_SAXS_HAS_IMP_KERNEL = _IMP_kinematics.IMP_SAXS_HAS_IMP_KERNEL
362 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_kinematics.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
363 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_SAXS_HAS_BOOST_FILESYSTEM
364 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
365 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_SAXS_HAS_BOOST_RANDOM
366 IMP_SAXS_HAS_BOOST_REGEX = _IMP_kinematics.IMP_SAXS_HAS_BOOST_REGEX
367 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_SAXS_HAS_BOOST_SYSTEM
368 IMP_SAXS_HAS_CGAL = _IMP_kinematics.IMP_SAXS_HAS_CGAL
369 IMP_SAXS_HAS_HDF5 = _IMP_kinematics.IMP_SAXS_HAS_HDF5
370 IMPSAXS_SHOW_WARNINGS = _IMP_kinematics.IMPSAXS_SHOW_WARNINGS
372 IMP_KINEMATICS_HAS_IMP_CGAL = _IMP_kinematics.IMP_KINEMATICS_HAS_IMP_CGAL
373 IMP_KINEMATICS_HAS_IMP_DISPLAY = _IMP_kinematics.IMP_KINEMATICS_HAS_IMP_DISPLAY
374 IMP_KINEMATICS_HAS_IMP_SCORE_FUNCTOR = _IMP_kinematics.IMP_KINEMATICS_HAS_IMP_SCORE_FUNCTOR
375 IMP_KINEMATICS_HAS_BOOST_FILESYSTEM = _IMP_kinematics.IMP_KINEMATICS_HAS_BOOST_FILESYSTEM
376 IMP_KINEMATICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_kinematics.IMP_KINEMATICS_HAS_BOOST_PROGRAMOPTIONS
377 IMP_KINEMATICS_HAS_BOOST_RANDOM = _IMP_kinematics.IMP_KINEMATICS_HAS_BOOST_RANDOM
378 IMP_KINEMATICS_HAS_BOOST_REGEX = _IMP_kinematics.IMP_KINEMATICS_HAS_BOOST_REGEX
379 IMP_KINEMATICS_HAS_BOOST_SYSTEM = _IMP_kinematics.IMP_KINEMATICS_HAS_BOOST_SYSTEM
380 IMP_KINEMATICS_HAS_CGAL = _IMP_kinematics.IMP_KINEMATICS_HAS_CGAL
381 IMP_KINEMATICS_HAS_HDF5 = _IMP_kinematics.IMP_KINEMATICS_HAS_HDF5
382 IMPKINEMATICS_SHOW_WARNINGS = _IMP_kinematics.IMPKINEMATICS_SHOW_WARNINGS
384 _object_types.append(
"Joint")
387 def _object_cast_to_Joint(o):
388 """_object_cast_to_Joint(Object o) -> Joint"""
389 return _IMP_kinematics._object_cast_to_Joint(o)
391 _object_types.append(
"TransformationJoint")
394 def _object_cast_to_TransformationJoint(o):
395 """_object_cast_to_TransformationJoint(Object o) -> TransformationJoint"""
396 return _IMP_kinematics._object_cast_to_TransformationJoint(o)
398 _object_types.append(
"RevoluteJoint")
401 def _object_cast_to_RevoluteJoint(o):
402 """_object_cast_to_RevoluteJoint(Object o) -> RevoluteJoint"""
403 return _IMP_kinematics._object_cast_to_RevoluteJoint(o)
405 _object_types.append(
"DihedralAngleRevoluteJoint")
408 def _object_cast_to_DihedralAngleRevoluteJoint(o):
409 """_object_cast_to_DihedralAngleRevoluteJoint(Object o) -> DihedralAngleRevoluteJoint"""
410 return _IMP_kinematics._object_cast_to_DihedralAngleRevoluteJoint(o)
412 _object_types.append(
"BondAngleRevoluteJoint")
415 def _object_cast_to_BondAngleRevoluteJoint(o):
416 """_object_cast_to_BondAngleRevoluteJoint(Object o) -> BondAngleRevoluteJoint"""
417 return _IMP_kinematics._object_cast_to_BondAngleRevoluteJoint(o)
419 _object_types.append(
"PrismaticJoint")
422 def _object_cast_to_PrismaticJoint(o):
423 """_object_cast_to_PrismaticJoint(Object o) -> PrismaticJoint"""
424 return _IMP_kinematics._object_cast_to_PrismaticJoint(o)
426 _object_types.append(
"KinematicForest")
429 def _object_cast_to_KinematicForest(o):
430 """_object_cast_to_KinematicForest(Object o) -> KinematicForest"""
431 return _IMP_kinematics._object_cast_to_KinematicForest(o)
433 _object_types.append(
"KinematicForestScoreState")
436 def _object_cast_to_KinematicForestScoreState(o):
437 """_object_cast_to_KinematicForestScoreState(Object o) -> KinematicForestScoreState"""
438 return _IMP_kinematics._object_cast_to_KinematicForestScoreState(o)
440 _object_types.append(
"CompositeJoint")
443 def _object_cast_to_CompositeJoint(o):
444 """_object_cast_to_CompositeJoint(Object o) -> CompositeJoint"""
445 return _IMP_kinematics._object_cast_to_CompositeJoint(o)
447 _object_types.append(
"RevoluteJointMover")
450 def _object_cast_to_RevoluteJointMover(o):
451 """_object_cast_to_RevoluteJointMover(Object o) -> RevoluteJointMover"""
452 return _IMP_kinematics._object_cast_to_RevoluteJointMover(o)
454 _object_types.append(
"DOF")
457 def _object_cast_to_DOF(o):
458 """_object_cast_to_DOF(Object o) -> DOF"""
459 return _IMP_kinematics._object_cast_to_DOF(o)
462 _plural_types.append(
"DOFValuesList")
463 _value_types.append(
"DOFValues")
466 _object_types.append(
"DirectionalDOF")
469 def _object_cast_to_DirectionalDOF(o):
470 """_object_cast_to_DirectionalDOF(Object o) -> DirectionalDOF"""
471 return _IMP_kinematics._object_cast_to_DirectionalDOF(o)
473 _object_types.append(
"DOFsSampler")
476 def _object_cast_to_DOFsSampler(o):
477 """_object_cast_to_DOFsSampler(Object o) -> DOFsSampler"""
478 return _IMP_kinematics._object_cast_to_DOFsSampler(o)
480 _object_types.append(
"UniformBackboneSampler")
483 def _object_cast_to_UniformBackboneSampler(o):
484 """_object_cast_to_UniformBackboneSampler(Object o) -> UniformBackboneSampler"""
485 return _IMP_kinematics._object_cast_to_UniformBackboneSampler(o)
487 _object_types.append(
"ProteinKinematics")
490 def _object_cast_to_ProteinKinematics(o):
491 """_object_cast_to_ProteinKinematics(Object o) -> ProteinKinematics"""
492 return _IMP_kinematics._object_cast_to_ProteinKinematics(o)
494 _object_types.append(
"LocalPlanner")
497 def _object_cast_to_LocalPlanner(o):
498 """_object_cast_to_LocalPlanner(Object o) -> LocalPlanner"""
499 return _IMP_kinematics._object_cast_to_LocalPlanner(o)
501 _object_types.append(
"PathLocalPlanner")
504 def _object_cast_to_PathLocalPlanner(o):
505 """_object_cast_to_PathLocalPlanner(Object o) -> PathLocalPlanner"""
506 return _IMP_kinematics._object_cast_to_PathLocalPlanner(o)
508 _object_types.append(
"RRT")
511 def _object_cast_to_RRT(o):
512 """_object_cast_to_RRT(Object o) -> RRT"""
513 return _IMP_kinematics._object_cast_to_RRT(o)
515 """Proxy of C++ IMP::kinematics::Joint class."""
517 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
520 """get_version_info(Joint self) -> VersionInfo"""
521 return _IMP_kinematics.Joint_get_version_info(self)
524 def __init__(self, parent, child):
525 """__init__(IMP::kinematics::Joint self, RigidBody parent, RigidBody child) -> Joint"""
526 this = _IMP_kinematics.new_Joint(parent, child)
528 self.this.append(this)
529 except __builtin__.Exception:
532 def get_owner_kf(self):
533 """get_owner_kf(Joint self) -> KinematicForest"""
534 return _IMP_kinematics.Joint_get_owner_kf(self)
537 def get_transformation_child_to_parent(self):
538 """get_transformation_child_to_parent(Joint self) -> Transformation3D"""
539 return _IMP_kinematics.Joint_get_transformation_child_to_parent(self)
542 def get_parent_node(self):
543 """get_parent_node(Joint self) -> RigidBody"""
544 return _IMP_kinematics.Joint_get_parent_node(self)
547 def get_child_node(self):
548 """get_child_node(Joint self) -> RigidBody"""
549 return _IMP_kinematics.Joint_get_child_node(self)
553 """__str__(Joint self) -> std::string"""
554 return _IMP_kinematics.Joint___str__(self)
558 """__repr__(Joint self) -> std::string"""
559 return _IMP_kinematics.Joint___repr__(self)
564 return _object_cast_to_Joint(o)
566 Joint_swigregister = _IMP_kinematics.Joint_swigregister
567 Joint_swigregister(Joint)
569 class TransformationJoint(Joint):
570 """Proxy of C++ IMP::kinematics::TransformationJoint class."""
572 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
574 def __init__(self, parent, child):
575 """__init__(IMP::kinematics::TransformationJoint self, RigidBody parent, RigidBody child) -> TransformationJoint"""
576 this = _IMP_kinematics.new_TransformationJoint(parent, child)
578 self.this.append(this)
579 except __builtin__.Exception:
582 def set_transformation_child_to_parent(self, transformation):
583 """set_transformation_child_to_parent(TransformationJoint self, Transformation3D transformation)"""
584 return _IMP_kinematics.TransformationJoint_set_transformation_child_to_parent(self, transformation)
588 """__str__(TransformationJoint self) -> std::string"""
589 return _IMP_kinematics.TransformationJoint___str__(self)
593 """__repr__(TransformationJoint self) -> std::string"""
594 return _IMP_kinematics.TransformationJoint___repr__(self)
599 return _object_cast_to_TransformationJoint(o)
601 __swig_destroy__ = _IMP_kinematics.delete_TransformationJoint
602 __del__ =
lambda self:
None
603 TransformationJoint_swigregister = _IMP_kinematics.TransformationJoint_swigregister
604 TransformationJoint_swigregister(TransformationJoint)
606 class PrismaticJoint(Joint):
607 """Proxy of C++ IMP::kinematics::PrismaticJoint class."""
609 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
611 def __init__(self, *args):
613 __init__(IMP::kinematics::PrismaticJoint self, RigidBody parent, RigidBody child, XYZ a, XYZ b) -> PrismaticJoint
614 __init__(IMP::kinematics::PrismaticJoint self, RigidBody parent, RigidBody child) -> PrismaticJoint
616 this = _IMP_kinematics.new_PrismaticJoint(*args)
618 self.this.append(this)
619 except __builtin__.Exception:
622 def get_length(self):
623 """get_length(PrismaticJoint self) -> double"""
624 return _IMP_kinematics.PrismaticJoint_get_length(self)
627 def set_length(self, l):
628 """set_length(PrismaticJoint self, double l)"""
629 return _IMP_kinematics.PrismaticJoint_set_length(self, l)
633 """__str__(PrismaticJoint self) -> std::string"""
634 return _IMP_kinematics.PrismaticJoint___str__(self)
638 """__repr__(PrismaticJoint self) -> std::string"""
639 return _IMP_kinematics.PrismaticJoint___repr__(self)
644 return _object_cast_to_PrismaticJoint(o)
646 __swig_destroy__ = _IMP_kinematics.delete_PrismaticJoint
647 __del__ =
lambda self:
None
648 PrismaticJoint_swigregister = _IMP_kinematics.PrismaticJoint_swigregister
649 PrismaticJoint_swigregister(PrismaticJoint)
651 class CompositeJoint(Joint):
652 """Proxy of C++ IMP::kinematics::CompositeJoint class."""
654 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
656 def __init__(self, *args):
658 __init__(IMP::kinematics::CompositeJoint self, RigidBody parent, RigidBody child, IMP::kinematics::Joints joints) -> CompositeJoint
659 __init__(IMP::kinematics::CompositeJoint self, RigidBody parent, RigidBody child) -> CompositeJoint
661 this = _IMP_kinematics.new_CompositeJoint(*args)
663 self.this.append(this)
664 except __builtin__.Exception:
667 def add_downstream_joint(self, j):
668 """add_downstream_joint(CompositeJoint self, Joint j)"""
669 return _IMP_kinematics.CompositeJoint_add_downstream_joint(self, j)
672 def add_upstream_joint(self, j):
673 """add_upstream_joint(CompositeJoint self, Joint j)"""
674 return _IMP_kinematics.CompositeJoint_add_upstream_joint(self, j)
677 def set_joints(self, joints):
678 """set_joints(CompositeJoint self, IMP::kinematics::Joints joints)"""
679 return _IMP_kinematics.CompositeJoint_set_joints(self, joints)
682 def get_inner_joints(self):
683 """get_inner_joints(CompositeJoint self) -> IMP::kinematics::Joints const &"""
684 return _IMP_kinematics.CompositeJoint_get_inner_joints(self)
688 """__str__(CompositeJoint self) -> std::string"""
689 return _IMP_kinematics.CompositeJoint___str__(self)
693 """__repr__(CompositeJoint self) -> std::string"""
694 return _IMP_kinematics.CompositeJoint___repr__(self)
699 return _object_cast_to_CompositeJoint(o)
701 __swig_destroy__ = _IMP_kinematics.delete_CompositeJoint
702 __del__ =
lambda self:
None
703 CompositeJoint_swigregister = _IMP_kinematics.CompositeJoint_swigregister
704 CompositeJoint_swigregister(CompositeJoint)
706 class RevoluteJoint(Joint):
707 """Proxy of C++ IMP::kinematics::RevoluteJoint class."""
709 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
711 def __init__(self, parent, child):
712 """__init__(IMP::kinematics::RevoluteJoint self, RigidBody parent, RigidBody child) -> RevoluteJoint"""
713 if self.__class__ == RevoluteJoint:
717 this = _IMP_kinematics.new_RevoluteJoint(_self, parent, child)
719 self.this.append(this)
720 except __builtin__.Exception:
723 if self.__class__ != RevoluteJoint:
724 _director_objects.register(self)
728 __swig_destroy__ = _IMP_kinematics.delete_RevoluteJoint
729 __del__ =
lambda self:
None
731 def set_angle(self, angle):
732 """set_angle(RevoluteJoint self, double angle)"""
733 return _IMP_kinematics.RevoluteJoint_set_angle(self, angle)
737 """get_angle(RevoluteJoint self) -> double"""
738 return _IMP_kinematics.RevoluteJoint_get_angle(self)
741 def get_rot_axis_origin(self):
742 """get_rot_axis_origin(RevoluteJoint self) -> Vector3D"""
743 return _IMP_kinematics.RevoluteJoint_get_rot_axis_origin(self)
746 def get_rot_axis_unit_vector(self):
747 """get_rot_axis_unit_vector(RevoluteJoint self) -> Vector3D"""
748 return _IMP_kinematics.RevoluteJoint_get_rot_axis_unit_vector(self)
751 def update_child_node_reference_frame(self):
752 """update_child_node_reference_frame(RevoluteJoint self)"""
753 return _IMP_kinematics.RevoluteJoint_update_child_node_reference_frame(self)
756 def update_axis_of_rotation_from_cartesian_witnesses(self):
757 """update_axis_of_rotation_from_cartesian_witnesses(RevoluteJoint self)"""
758 return _IMP_kinematics.RevoluteJoint_update_axis_of_rotation_from_cartesian_witnesses(self)
761 def get_current_angle_from_cartesian_witnesses(self):
762 """get_current_angle_from_cartesian_witnesses(RevoluteJoint self) -> double"""
763 return _IMP_kinematics.RevoluteJoint_get_current_angle_from_cartesian_witnesses(self)
766 def update_joint_from_cartesian_witnesses(self):
767 """update_joint_from_cartesian_witnesses(RevoluteJoint self)"""
768 return _IMP_kinematics.RevoluteJoint_update_joint_from_cartesian_witnesses(self)
771 def get_rotation_about_joint_in_parent_coordinates(self):
772 """get_rotation_about_joint_in_parent_coordinates(RevoluteJoint self) -> Transformation3D"""
773 return _IMP_kinematics.RevoluteJoint_get_rotation_about_joint_in_parent_coordinates(self)
775 angle_ = _swig_property(_IMP_kinematics.RevoluteJoint_angle__get, _IMP_kinematics.RevoluteJoint_angle__set)
776 last_updated_angle_ = _swig_property(_IMP_kinematics.RevoluteJoint_last_updated_angle__get, _IMP_kinematics.RevoluteJoint_last_updated_angle__set)
777 rot_axis_unit_vector_ = _swig_property(_IMP_kinematics.RevoluteJoint_rot_axis_unit_vector__get, _IMP_kinematics.RevoluteJoint_rot_axis_unit_vector__set)
778 rot_axis_origin_ = _swig_property(_IMP_kinematics.RevoluteJoint_rot_axis_origin__get, _IMP_kinematics.RevoluteJoint_rot_axis_origin__set)
781 """__str__(RevoluteJoint self) -> std::string"""
782 return _IMP_kinematics.RevoluteJoint___str__(self)
786 """__repr__(RevoluteJoint self) -> std::string"""
787 return _IMP_kinematics.RevoluteJoint___repr__(self)
792 return _object_cast_to_RevoluteJoint(o)
795 def get_type_name(self):
796 return self.__class__.__name__
797 def do_show(self, out):
800 if"IMP::kinematics" ==
"IMP":
801 return VersionInfo(self.__module__,
802 __import__(self.__module__).get_module_version())
805 __import__(self.__module__).get_module_version())
808 return _object_cast_to_RevoluteJoint(o)
810 def __disown__(self):
812 _IMP_kinematics.disown_RevoluteJoint(self)
813 return weakref_proxy(self)
816 """do_destroy(RevoluteJoint self)"""
817 return _IMP_kinematics.RevoluteJoint_do_destroy(self)
819 RevoluteJoint_swigregister = _IMP_kinematics.RevoluteJoint_swigregister
820 RevoluteJoint_swigregister(RevoluteJoint)
822 class DihedralAngleRevoluteJoint(RevoluteJoint):
823 """Proxy of C++ IMP::kinematics::DihedralAngleRevoluteJoint class."""
825 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
827 def __init__(self, parent, child, a, b, c, d):
828 """__init__(IMP::kinematics::DihedralAngleRevoluteJoint self, RigidBody parent, RigidBody child, XYZ a, XYZ b, XYZ c, XYZ d) -> DihedralAngleRevoluteJoint"""
829 this = _IMP_kinematics.new_DihedralAngleRevoluteJoint(parent, child, a, b, c, d)
831 self.this.append(this)
832 except __builtin__.Exception:
836 """get_a(DihedralAngleRevoluteJoint self) -> XYZ"""
837 return _IMP_kinematics.DihedralAngleRevoluteJoint_get_a(self)
841 """get_b(DihedralAngleRevoluteJoint self) -> XYZ"""
842 return _IMP_kinematics.DihedralAngleRevoluteJoint_get_b(self)
846 """get_c(DihedralAngleRevoluteJoint self) -> XYZ"""
847 return _IMP_kinematics.DihedralAngleRevoluteJoint_get_c(self)
851 """get_d(DihedralAngleRevoluteJoint self) -> XYZ"""
852 return _IMP_kinematics.DihedralAngleRevoluteJoint_get_d(self)
856 """__str__(DihedralAngleRevoluteJoint self) -> std::string"""
857 return _IMP_kinematics.DihedralAngleRevoluteJoint___str__(self)
861 """__repr__(DihedralAngleRevoluteJoint self) -> std::string"""
862 return _IMP_kinematics.DihedralAngleRevoluteJoint___repr__(self)
867 return _object_cast_to_DihedralAngleRevoluteJoint(o)
869 __swig_destroy__ = _IMP_kinematics.delete_DihedralAngleRevoluteJoint
870 __del__ =
lambda self:
None
871 DihedralAngleRevoluteJoint_swigregister = _IMP_kinematics.DihedralAngleRevoluteJoint_swigregister
872 DihedralAngleRevoluteJoint_swigregister(DihedralAngleRevoluteJoint)
874 class BondAngleRevoluteJoint(RevoluteJoint):
875 """Proxy of C++ IMP::kinematics::BondAngleRevoluteJoint class."""
877 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
879 def __init__(self, parent, child, a, b, c):
880 """__init__(IMP::kinematics::BondAngleRevoluteJoint self, RigidBody parent, RigidBody child, XYZ a, XYZ b, XYZ c) -> BondAngleRevoluteJoint"""
881 this = _IMP_kinematics.new_BondAngleRevoluteJoint(parent, child, a, b, c)
883 self.this.append(this)
884 except __builtin__.Exception:
888 """__str__(BondAngleRevoluteJoint self) -> std::string"""
889 return _IMP_kinematics.BondAngleRevoluteJoint___str__(self)
893 """__repr__(BondAngleRevoluteJoint self) -> std::string"""
894 return _IMP_kinematics.BondAngleRevoluteJoint___repr__(self)
899 return _object_cast_to_BondAngleRevoluteJoint(o)
901 __swig_destroy__ = _IMP_kinematics.delete_BondAngleRevoluteJoint
902 __del__ =
lambda self:
None
903 BondAngleRevoluteJoint_swigregister = _IMP_kinematics.BondAngleRevoluteJoint_swigregister
904 BondAngleRevoluteJoint_swigregister(BondAngleRevoluteJoint)
907 """Proxy of C++ IMP::kinematics::RevoluteJointMover class."""
909 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
911 def __init__(self, m, joints, stddev=0.01):
913 __init__(IMP::kinematics::RevoluteJointMover self, Model m, IMP::kinematics::RevoluteJoints const & joints, double const stddev=0.01) -> RevoluteJointMover
914 __init__(IMP::kinematics::RevoluteJointMover self, Model m, IMP::kinematics::RevoluteJoints const & joints) -> RevoluteJointMover
916 this = _IMP_kinematics.new_RevoluteJointMover(m, joints, stddev)
918 self.this.append(this)
919 except __builtin__.Exception:
922 def set_sigma(self, sigma):
923 """set_sigma(RevoluteJointMover self, IMP::Float sigma)"""
924 return _IMP_kinematics.RevoluteJointMover_set_sigma(self, sigma)
928 """get_sigma(RevoluteJointMover self) -> IMP::Float"""
929 return _IMP_kinematics.RevoluteJointMover_get_sigma(self)
933 """get_version_info(RevoluteJointMover self) -> VersionInfo"""
934 return _IMP_kinematics.RevoluteJointMover_get_version_info(self)
938 """__str__(RevoluteJointMover self) -> std::string"""
939 return _IMP_kinematics.RevoluteJointMover___str__(self)
943 """__repr__(RevoluteJointMover self) -> std::string"""
944 return _IMP_kinematics.RevoluteJointMover___repr__(self)
949 return _object_cast_to_RevoluteJointMover(o)
951 RevoluteJointMover_swigregister = _IMP_kinematics.RevoluteJointMover_swigregister
952 RevoluteJointMover_swigregister(RevoluteJointMover)
955 """Proxy of C++ IMP::kinematics::KinematicForest class."""
957 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
960 """get_version_info(KinematicForest self) -> VersionInfo"""
961 return _IMP_kinematics.KinematicForest_get_version_info(self)
964 def __init__(self, *args):
966 __init__(IMP::kinematics::KinematicForest self, Model m) -> KinematicForest
967 __init__(IMP::kinematics::KinematicForest self, Model m, Hierarchy hierarchy) -> KinematicForest
969 this = _IMP_kinematics.new_KinematicForest(*args)
971 self.this.append(this)
972 except __builtin__.Exception:
975 def add_edge(self, *args):
977 add_edge(KinematicForest self, RigidBody parent, RigidBody child) -> Joint
978 add_edge(KinematicForest self, Joint joint)
980 return _IMP_kinematics.KinematicForest_add_edge(self, *args)
983 def add_rigid_bodies_in_chain(self, rbs):
984 """add_rigid_bodies_in_chain(KinematicForest self, IMP::core::RigidBodies rbs)"""
985 return _IMP_kinematics.KinematicForest_add_rigid_bodies_in_chain(self, rbs)
988 def reset_root(self, new_root):
989 """reset_root(KinematicForest self, Particle new_root)"""
990 return _IMP_kinematics.KinematicForest_reset_root(self, new_root)
993 def update_all_internal_coordinates(self):
994 """update_all_internal_coordinates(KinematicForest self)"""
995 return _IMP_kinematics.KinematicForest_update_all_internal_coordinates(self)
998 def update_all_external_coordinates(self):
999 """update_all_external_coordinates(KinematicForest self)"""
1000 return _IMP_kinematics.KinematicForest_update_all_external_coordinates(self)
1003 def get_ordered_joints(self):
1004 """get_ordered_joints(KinematicForest self) -> IMP::kinematics::Joints"""
1005 return _IMP_kinematics.KinematicForest_get_ordered_joints(self)
1008 def mark_internal_coordinates_changed(self):
1009 """mark_internal_coordinates_changed(KinematicForest self)"""
1010 return _IMP_kinematics.KinematicForest_mark_internal_coordinates_changed(self)
1013 def mark_external_coordinates_changed(self):
1014 """mark_external_coordinates_changed(KinematicForest self)"""
1015 return _IMP_kinematics.KinematicForest_mark_external_coordinates_changed(self)
1018 def set_coordinates_safe(self, rb, c):
1019 """set_coordinates_safe(KinematicForest self, RigidBody rb, Vector3D c)"""
1020 return _IMP_kinematics.KinematicForest_set_coordinates_safe(self, rb, c)
1023 def get_coordinates_safe(self, rb):
1024 """get_coordinates_safe(KinematicForest self, RigidBody rb) -> Vector3D"""
1025 return _IMP_kinematics.KinematicForest_get_coordinates_safe(self, rb)
1028 def get_is_member(self, rb):
1029 """get_is_member(KinematicForest self, RigidBody rb) -> bool"""
1030 return _IMP_kinematics.KinematicForest_get_is_member(self, rb)
1033 def get_reference_frame_safe(self, rb):
1034 """get_reference_frame_safe(KinematicForest self, RigidBody rb) -> ReferenceFrame3D"""
1035 return _IMP_kinematics.KinematicForest_get_reference_frame_safe(self, rb)
1038 def set_reference_frame_safe(self, rb, r):
1039 """set_reference_frame_safe(KinematicForest self, RigidBody rb, ReferenceFrame3D r)"""
1040 return _IMP_kinematics.KinematicForest_set_reference_frame_safe(self, rb, r)
1044 """__str__(KinematicForest self) -> std::string"""
1045 return _IMP_kinematics.KinematicForest___str__(self)
1049 """__repr__(KinematicForest self) -> std::string"""
1050 return _IMP_kinematics.KinematicForest___repr__(self)
1055 return _object_cast_to_KinematicForest(o)
1057 KinematicForest_swigregister = _IMP_kinematics.KinematicForest_swigregister
1058 KinematicForest_swigregister(KinematicForest)
1061 """Proxy of C++ IMP::kinematics::KinematicForestScoreState class."""
1063 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1066 """get_version_info(KinematicForestScoreState self) -> VersionInfo"""
1067 return _IMP_kinematics.KinematicForestScoreState_get_version_info(self)
1070 def __init__(self, kf, rbs, atoms):
1071 """__init__(IMP::kinematics::KinematicForestScoreState self, KinematicForest kf, IMP::core::RigidBodies rbs, IMP::ParticlesTemp atoms) -> KinematicForestScoreState"""
1072 this = _IMP_kinematics.new_KinematicForestScoreState(kf, rbs, atoms)
1074 self.this.append(this)
1075 except __builtin__.Exception:
1078 def do_before_evaluate(self):
1079 """do_before_evaluate(KinematicForestScoreState self)"""
1080 return _IMP_kinematics.KinematicForestScoreState_do_before_evaluate(self)
1083 def do_after_evaluate(self, da):
1084 """do_after_evaluate(KinematicForestScoreState self, DerivativeAccumulator da)"""
1085 return _IMP_kinematics.KinematicForestScoreState_do_after_evaluate(self, da)
1089 """do_get_inputs(KinematicForestScoreState self) -> IMP::ModelObjectsTemp"""
1090 return _IMP_kinematics.KinematicForestScoreState_do_get_inputs(self)
1094 """do_get_outputs(KinematicForestScoreState self) -> IMP::ModelObjectsTemp"""
1095 return _IMP_kinematics.KinematicForestScoreState_do_get_outputs(self)
1099 """__str__(KinematicForestScoreState self) -> std::string"""
1100 return _IMP_kinematics.KinematicForestScoreState___str__(self)
1104 """__repr__(KinematicForestScoreState self) -> std::string"""
1105 return _IMP_kinematics.KinematicForestScoreState___repr__(self)
1110 return _object_cast_to_KinematicForestScoreState(o)
1112 KinematicForestScoreState_swigregister = _IMP_kinematics.KinematicForestScoreState_swigregister
1113 KinematicForestScoreState_swigregister(KinematicForestScoreState)
1116 """Proxy of C++ IMP::kinematics::DOF class."""
1118 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1121 """get_version_info(DOF self) -> VersionInfo"""
1122 return _IMP_kinematics.DOF_get_version_info(self)
1125 def __init__(self, *args):
1127 __init__(IMP::kinematics::DOF self, double v) -> DOF
1128 __init__(IMP::kinematics::DOF self, double v, double min, double max, double step_size) -> DOF
1130 this = _IMP_kinematics.new_DOF(*args)
1132 self.this.append(this)
1133 except __builtin__.Exception:
1136 def get_value(self):
1137 """get_value(DOF self) -> double"""
1138 return _IMP_kinematics.DOF_get_value(self)
1141 def set_value(self, v):
1142 """set_value(DOF self, double v)"""
1143 return _IMP_kinematics.DOF_set_value(self, v)
1146 def get_range(self):
1147 """get_range(DOF self) -> std::pair< double,double >"""
1148 return _IMP_kinematics.DOF_get_range(self)
1151 def set_range(self, range):
1152 """set_range(DOF self, std::pair< double,double > range)"""
1153 return _IMP_kinematics.DOF_set_range(self, range)
1156 def get_step_size(self):
1157 """get_step_size(DOF self) -> double"""
1158 return _IMP_kinematics.DOF_get_step_size(self)
1161 def set_step_size(self, step_size):
1162 """set_step_size(DOF self, double step_size)"""
1163 return _IMP_kinematics.DOF_set_step_size(self, step_size)
1166 def get_number_of_steps(self, *args):
1168 get_number_of_steps(DOF self, double value) -> int
1169 get_number_of_steps(DOF self, double value1, double value2) -> int
1171 return _IMP_kinematics.DOF_get_number_of_steps(self, *args)
1175 """__str__(DOF self) -> std::string"""
1176 return _IMP_kinematics.DOF___str__(self)
1180 """__repr__(DOF self) -> std::string"""
1181 return _IMP_kinematics.DOF___repr__(self)
1186 return _object_cast_to_DOF(o)
1188 DOF_swigregister = _IMP_kinematics.DOF_swigregister
1189 DOF_swigregister(DOF)
1191 class DOFValues(IMP.saxs.DistBase):
1192 """Proxy of C++ IMP::kinematics::DOFValues class."""
1194 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1196 def __init__(self, *args):
1198 __init__(IMP::kinematics::DOFValues self, IMP::kinematics::DOFs const & dofs) -> DOFValues
1199 __init__(IMP::kinematics::DOFValues self) -> DOFValues
1201 this = _IMP_kinematics.new_DOFValues(*args)
1203 self.this.append(this)
1204 except __builtin__.Exception:
1207 def get_distance2(self, *args):
1209 get_distance2(DOFValues self, DOFValues other_dof_values) -> double
1210 get_distance2(DOFValues self, DOFValues other_dof_values, std::vector< bool,std::allocator< bool > > const & active_dofs) -> double
1212 return _IMP_kinematics.DOFValues_get_distance2(self, *args)
1217 get_distance(DOFValues self, DOFValues other_dof_values) -> double
1218 get_distance(DOFValues self, DOFValues other_dof_values, std::vector< bool,std::allocator< bool > > const & active_dofs) -> double
1220 return _IMP_kinematics.DOFValues_get_distance(self, *args)
1223 def show(self, *args):
1225 show(DOFValues self, _ostream out)
1226 show(DOFValues self)
1228 return _IMP_kinematics.DOFValues_show(self, *args)
1232 """__str__(DOFValues self) -> std::string"""
1233 return _IMP_kinematics.DOFValues___str__(self)
1237 """__repr__(DOFValues self) -> std::string"""
1238 return _IMP_kinematics.DOFValues___repr__(self)
1240 __swig_destroy__ = _IMP_kinematics.delete_DOFValues
1241 __del__ =
lambda self:
None
1242 DOFValues_swigregister = _IMP_kinematics.DOFValues_swigregister
1243 DOFValues_swigregister(DOFValues)
1246 """Proxy of C++ IMP::kinematics::DirectionalDOF class."""
1248 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1250 def __init__(self, dofs):
1251 """__init__(IMP::kinematics::DirectionalDOF self, IMP::kinematics::DOFs const & dofs) -> DirectionalDOF"""
1252 this = _IMP_kinematics.new_DirectionalDOF(dofs)
1254 self.this.append(this)
1255 except __builtin__.Exception:
1258 def set_end_points(self, q1, q2):
1259 """set_end_points(DirectionalDOF self, DOFValues q1, DOFValues q2)"""
1260 return _IMP_kinematics.DirectionalDOF_set_end_points(self, q1, q2)
1263 def get_dofs_values(self):
1264 """get_dofs_values(DirectionalDOF self) -> DOFValues"""
1265 return _IMP_kinematics.DirectionalDOF_get_dofs_values(self)
1268 def get_value(self):
1269 """get_value(DirectionalDOF self) -> double"""
1270 return _IMP_kinematics.DirectionalDOF_get_value(self)
1274 """get_version_info(DirectionalDOF self) -> VersionInfo"""
1275 return _IMP_kinematics.DirectionalDOF_get_version_info(self)
1279 """__str__(DirectionalDOF self) -> std::string"""
1280 return _IMP_kinematics.DirectionalDOF___str__(self)
1284 """__repr__(DirectionalDOF self) -> std::string"""
1285 return _IMP_kinematics.DirectionalDOF___repr__(self)
1290 return _object_cast_to_DirectionalDOF(o)
1292 DirectionalDOF_swigregister = _IMP_kinematics.DirectionalDOF_swigregister
1293 DirectionalDOF_swigregister(DirectionalDOF)
1296 """Proxy of C++ IMP::kinematics::DOFsSampler class."""
1298 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1300 def get_type_name(self):
1301 """get_type_name(DOFsSampler self) -> std::string"""
1302 return _IMP_kinematics.DOFsSampler_get_type_name(self)
1306 """get_version_info(DOFsSampler self) -> VersionInfo"""
1307 return _IMP_kinematics.DOFsSampler_get_version_info(self)
1310 def __init__(self, dofs):
1311 """__init__(IMP::kinematics::DOFsSampler self, IMP::kinematics::DOFs dofs) -> DOFsSampler"""
1312 if self.__class__ == DOFsSampler:
1316 this = _IMP_kinematics.new_DOFsSampler(_self, dofs)
1318 self.this.append(this)
1319 except __builtin__.Exception:
1322 if self.__class__ != DOFsSampler:
1323 _director_objects.register(self)
1328 def get_sample(self):
1329 """get_sample(DOFsSampler self) -> DOFValues"""
1330 return _IMP_kinematics.DOFsSampler_get_sample(self)
1333 def apply(self, values):
1334 """apply(DOFsSampler self, DOFValues values)"""
1335 return _IMP_kinematics.DOFsSampler_apply(self, values)
1338 def apply_last_sample(self):
1339 """apply_last_sample(DOFsSampler self)"""
1340 return _IMP_kinematics.DOFsSampler_apply_last_sample(self)
1343 def sample_and_apply(self):
1344 """sample_and_apply(DOFsSampler self)"""
1345 return _IMP_kinematics.DOFsSampler_sample_and_apply(self)
1349 """get_dofs(DOFsSampler self) -> IMP::kinematics::DOFs const &"""
1350 return _IMP_kinematics.DOFsSampler_get_dofs(self)
1353 def get_dof(self, i):
1354 """get_dof(DOFsSampler self, unsigned int i) -> DOF"""
1355 return _IMP_kinematics.DOFsSampler_get_dof(self, i)
1358 def get_number_of_dofs(self):
1359 """get_number_of_dofs(DOFsSampler self) -> unsigned int"""
1360 return _IMP_kinematics.DOFsSampler_get_number_of_dofs(self)
1363 def do_get_sample(self):
1364 """do_get_sample(DOFsSampler self) -> DOFValues"""
1365 return _IMP_kinematics.DOFsSampler_do_get_sample(self)
1369 """__str__(DOFsSampler self) -> std::string"""
1370 return _IMP_kinematics.DOFsSampler___str__(self)
1374 """__repr__(DOFsSampler self) -> std::string"""
1375 return _IMP_kinematics.DOFsSampler___repr__(self)
1380 return _object_cast_to_DOFsSampler(o)
1383 def get_type_name(self):
1384 return self.__class__.__name__
1385 def do_show(self, out):
1388 if"IMP::kinematics" ==
"IMP":
1389 return VersionInfo(self.__module__,
1390 __import__(self.__module__).get_module_version())
1393 __import__(self.__module__).get_module_version())
1396 return _object_cast_to_DOFsSampler(o)
1398 def __disown__(self):
1400 _IMP_kinematics.disown_DOFsSampler(self)
1401 return weakref_proxy(self)
1404 """do_destroy(DOFsSampler self)"""
1405 return _IMP_kinematics.DOFsSampler_do_destroy(self)
1407 DOFsSampler_swigregister = _IMP_kinematics.DOFsSampler_swigregister
1408 DOFsSampler_swigregister(DOFsSampler)
1410 class UniformBackboneSampler(DOFsSampler):
1411 """Proxy of C++ IMP::kinematics::UniformBackboneSampler class."""
1413 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1415 def __init__(self, joints, dofs):
1416 """__init__(IMP::kinematics::UniformBackboneSampler self, IMP::kinematics::DihedralAngleRevoluteJoints joints, IMP::kinematics::DOFs dofs) -> UniformBackboneSampler"""
1417 this = _IMP_kinematics.new_UniformBackboneSampler(joints, dofs)
1419 self.this.append(this)
1420 except __builtin__.Exception:
1424 """__str__(UniformBackboneSampler self) -> std::string"""
1425 return _IMP_kinematics.UniformBackboneSampler___str__(self)
1429 """__repr__(UniformBackboneSampler self) -> std::string"""
1430 return _IMP_kinematics.UniformBackboneSampler___repr__(self)
1435 return _object_cast_to_UniformBackboneSampler(o)
1437 __swig_destroy__ = _IMP_kinematics.delete_UniformBackboneSampler
1438 __del__ =
lambda self:
None
1439 UniformBackboneSampler_swigregister = _IMP_kinematics.UniformBackboneSampler_swigregister
1440 UniformBackboneSampler_swigregister(UniformBackboneSampler)
1443 """Proxy of C++ IMP::kinematics::ProteinKinematics class."""
1445 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1447 def __init__(self, *args):
1449 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, bool flexible_backbone=True, bool flexible_side_chains=False) -> ProteinKinematics
1450 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, bool flexible_backbone=True) -> ProteinKinematics
1451 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd) -> ProteinKinematics
1452 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, IMP::atom::Residues const & flexible_residues, std::vector< IMP::atom::Atoms,std::allocator< IMP::atom::Atoms > > const & dihedral_angles, IMP::atom::Atoms open_loop_bond_atoms, bool flexible_backbone=True, bool flexible_side_chains=False) -> ProteinKinematics
1453 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, IMP::atom::Residues const & flexible_residues, std::vector< IMP::atom::Atoms,std::allocator< IMP::atom::Atoms > > const & dihedral_angles, IMP::atom::Atoms open_loop_bond_atoms, bool flexible_backbone=True) -> ProteinKinematics
1454 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, IMP::atom::Residues const & flexible_residues, std::vector< IMP::atom::Atoms,std::allocator< IMP::atom::Atoms > > const & dihedral_angles, IMP::atom::Atoms open_loop_bond_atoms) -> ProteinKinematics
1455 __init__(IMP::kinematics::ProteinKinematics self, Hierarchy mhd, IMP::atom::Residues const & flexible_residues, std::vector< IMP::atom::Atoms,std::allocator< IMP::atom::Atoms > > const & dihedral_angles) -> ProteinKinematics
1457 this = _IMP_kinematics.new_ProteinKinematics(*args)
1459 self.this.append(this)
1460 except __builtin__.Exception:
1463 def get_phi(self, r):
1464 """get_phi(ProteinKinematics self, Residue r) -> double"""
1465 return _IMP_kinematics.ProteinKinematics_get_phi(self, r)
1468 def get_psi(self, r):
1469 """get_psi(ProteinKinematics self, Residue r) -> double"""
1470 return _IMP_kinematics.ProteinKinematics_get_psi(self, r)
1473 def get_joints(self):
1474 """get_joints(ProteinKinematics self) -> IMP::kinematics::DihedralAngleRevoluteJoints"""
1475 return _IMP_kinematics.ProteinKinematics_get_joints(self)
1478 def get_loop_joints(self):
1479 """get_loop_joints(ProteinKinematics self) -> IMP::kinematics::DihedralAngleRevoluteJoints"""
1480 return _IMP_kinematics.ProteinKinematics_get_loop_joints(self)
1483 def get_ordered_joints(self):
1484 """get_ordered_joints(ProteinKinematics self) -> IMP::kinematics::DihedralAngleRevoluteJoints"""
1485 return _IMP_kinematics.ProteinKinematics_get_ordered_joints(self)
1488 def get_kinematic_forest(self):
1489 """get_kinematic_forest(ProteinKinematics self) -> KinematicForest"""
1490 return _IMP_kinematics.ProteinKinematics_get_kinematic_forest(self)
1493 def get_rigid_bodies(self):
1494 """get_rigid_bodies(ProteinKinematics self) -> IMP::core::RigidBodies"""
1495 return _IMP_kinematics.ProteinKinematics_get_rigid_bodies(self)
1498 def set_phi(self, r, angle):
1499 """set_phi(ProteinKinematics self, Residue r, double angle)"""
1500 return _IMP_kinematics.ProteinKinematics_set_phi(self, r, angle)
1503 def set_psi(self, r, angle):
1504 """set_psi(ProteinKinematics self, Residue r, double angle)"""
1505 return _IMP_kinematics.ProteinKinematics_set_psi(self, r, angle)
1509 """get_version_info(ProteinKinematics self) -> VersionInfo"""
1510 return _IMP_kinematics.ProteinKinematics_get_version_info(self)
1514 """__str__(ProteinKinematics self) -> std::string"""
1515 return _IMP_kinematics.ProteinKinematics___str__(self)
1519 """__repr__(ProteinKinematics self) -> std::string"""
1520 return _IMP_kinematics.ProteinKinematics___repr__(self)
1525 return _object_cast_to_ProteinKinematics(o)
1527 ProteinKinematics_swigregister = _IMP_kinematics.ProteinKinematics_swigregister
1528 ProteinKinematics_swigregister(ProteinKinematics)
1531 """Proxy of C++ IMP::kinematics::LocalPlanner class."""
1533 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1535 def __init__(self, *args, **kwargs):
1536 raise AttributeError(
"No constructor defined - class is abstract")
1539 """get_version_info(LocalPlanner self) -> VersionInfo"""
1540 return _IMP_kinematics.LocalPlanner_get_version_info(self)
1543 def plan(self, q_near, q_rand, sf):
1544 """plan(LocalPlanner self, DOFValues q_near, DOFValues q_rand, ScoringFunction sf) -> std::vector< IMP::kinematics::DOFValues,std::allocator< IMP::kinematics::DOFValues > >"""
1545 return _IMP_kinematics.LocalPlanner_plan(self, q_near, q_rand, sf)
1548 def is_valid(self, values, sf):
1549 """is_valid(LocalPlanner self, DOFValues values, ScoringFunction sf) -> bool"""
1550 return _IMP_kinematics.LocalPlanner_is_valid(self, values, sf)
1554 """__str__(LocalPlanner self) -> std::string"""
1555 return _IMP_kinematics.LocalPlanner___str__(self)
1559 """__repr__(LocalPlanner self) -> std::string"""
1560 return _IMP_kinematics.LocalPlanner___repr__(self)
1565 return _object_cast_to_LocalPlanner(o)
1567 LocalPlanner_swigregister = _IMP_kinematics.LocalPlanner_swigregister
1568 LocalPlanner_swigregister(LocalPlanner)
1570 class PathLocalPlanner(LocalPlanner):
1571 """Proxy of C++ IMP::kinematics::PathLocalPlanner class."""
1573 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1575 def __init__(self, model, dofs_sampler, directional_dof, save_step_interval=1):
1577 __init__(IMP::kinematics::PathLocalPlanner self, Model model, DOFsSampler dofs_sampler, DirectionalDOF directional_dof, int save_step_interval=1) -> PathLocalPlanner
1578 __init__(IMP::kinematics::PathLocalPlanner self, Model model, DOFsSampler dofs_sampler, DirectionalDOF directional_dof) -> PathLocalPlanner
1580 this = _IMP_kinematics.new_PathLocalPlanner(model, dofs_sampler, directional_dof, save_step_interval)
1582 self.this.append(this)
1583 except __builtin__.Exception:
1587 """__str__(PathLocalPlanner self) -> std::string"""
1588 return _IMP_kinematics.PathLocalPlanner___str__(self)
1592 """__repr__(PathLocalPlanner self) -> std::string"""
1593 return _IMP_kinematics.PathLocalPlanner___repr__(self)
1598 return _object_cast_to_PathLocalPlanner(o)
1600 __swig_destroy__ = _IMP_kinematics.delete_PathLocalPlanner
1601 __del__ =
lambda self:
None
1602 PathLocalPlanner_swigregister = _IMP_kinematics.PathLocalPlanner_swigregister
1603 PathLocalPlanner_swigregister(PathLocalPlanner)
1606 """Proxy of C++ IMP::kinematics::RRT class."""
1608 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1611 """get_version_info(RRT self) -> VersionInfo"""
1612 return _IMP_kinematics.RRT_get_version_info(self)
1615 def __init__(self, m, sampler, planner, cspace_dofs, iteration_number=1000, tree_size=100, number_of_sampled_dofs=0):
1617 __init__(IMP::kinematics::RRT self, Model m, DOFsSampler sampler, LocalPlanner planner, IMP::kinematics::DOFs const & cspace_dofs, unsigned int iteration_number=1000, unsigned int tree_size=100, unsigned int number_of_sampled_dofs=0) -> RRT
1618 __init__(IMP::kinematics::RRT self, Model m, DOFsSampler sampler, LocalPlanner planner, IMP::kinematics::DOFs const & cspace_dofs, unsigned int iteration_number=1000, unsigned int tree_size=100) -> RRT
1619 __init__(IMP::kinematics::RRT self, Model m, DOFsSampler sampler, LocalPlanner planner, IMP::kinematics::DOFs const & cspace_dofs, unsigned int iteration_number=1000) -> RRT
1620 __init__(IMP::kinematics::RRT self, Model m, DOFsSampler sampler, LocalPlanner planner, IMP::kinematics::DOFs const & cspace_dofs) -> RRT
1622 this = _IMP_kinematics.new_RRT(m, sampler, planner, cspace_dofs, iteration_number, tree_size, number_of_sampled_dofs)
1624 self.this.append(this)
1625 except __builtin__.Exception:
1628 def do_sample(self):
1629 """do_sample(RRT self) -> ConfigurationSet"""
1630 return _IMP_kinematics.RRT_do_sample(self)
1633 def run(self, number_of_iterations=0):
1635 run(RRT self, unsigned int number_of_iterations=0) -> bool
1636 run(RRT self) -> bool
1638 return _IMP_kinematics.RRT_run(self, number_of_iterations)
1641 def get_DOFValues(self):
1642 """get_DOFValues(RRT self) -> std::vector< IMP::kinematics::DOFValues,std::allocator< IMP::kinematics::DOFValues > >"""
1643 return _IMP_kinematics.RRT_get_DOFValues(self)
1646 def set_number_of_iterations(self, num):
1647 """set_number_of_iterations(RRT self, unsigned int num)"""
1648 return _IMP_kinematics.RRT_set_number_of_iterations(self, num)
1651 def set_tree_size(self, num):
1652 """set_tree_size(RRT self, unsigned int num)"""
1653 return _IMP_kinematics.RRT_set_tree_size(self, num)
1656 def set_actual_tree_size(self, num):
1657 """set_actual_tree_size(RRT self, unsigned int num)"""
1658 return _IMP_kinematics.RRT_set_actual_tree_size(self, num)
1661 def set_number_of_collisions(self, num):
1662 """set_number_of_collisions(RRT self, unsigned int num)"""
1663 return _IMP_kinematics.RRT_set_number_of_collisions(self, num)
1667 """__str__(RRT self) -> std::string"""
1668 return _IMP_kinematics.RRT___str__(self)
1672 """__repr__(RRT self) -> std::string"""
1673 return _IMP_kinematics.RRT___repr__(self)
1678 return _object_cast_to_RRT(o)
1680 RRT_swigregister = _IMP_kinematics.RRT_swigregister
1681 RRT_swigregister(RRT)
1684 def get_module_version():
1685 """get_module_version() -> std::string const"""
1686 return _IMP_kinematics.get_module_version()
1689 """get_example_path(std::string fname) -> std::string"""
1690 return _IMP_kinematics.get_example_path(fname)
1693 """get_data_path(std::string fname) -> std::string"""
1694 return _IMP_kinematics.get_data_path(fname)
1696 from .
import _version_check
1697 _version_check.check_version(get_module_version())
1698 __version__ = get_module_version()
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Base class for all samplers.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
Composable functors to implement scores via compile-time composition.
double get_angle(const Line3D &a, const Line3D &b)
Get angle in radians between two lines around their closest points.
virtual void do_destroy()
Common base class for heavy weight IMP objects.
ScoreStates maintain invariants in the Model.
A base class for classes which perturb particles.
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Version and module information for Objects.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
double get_distance(const Line3D &s, const Vector3D &p)
Get closest distance between a line and a point.
Support for small angle X-ray scattering (SAXS) data.